1ZYWA

Crystal structure of mutant k8dp9sr58kp60g of scorpion alpha-like neurotoxin bmk m1 from buthus martensii karsch
Total Genus 18
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
66
structure length
66
Chain Sequence
b'NSVRDAYIADSHNCVYECARNEYCNDLCTKNGAKSGYCQWVGKYGNGCWCIELPDNVPIKVGGKCH'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structural basis for the voltage-gated Na+ channel selectivity of the scorpion alpha-like toxin BmK M1
pubmed doi rcsb
molecule keywords Alpha-like neurotoxin BmK-I
source organism Mesobuthus martensii
molecule tags Toxin
total genus 18
structure length 66
sequence length 66
ec nomenclature
pdb deposition date 2005-06-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00537 Toxin_3 Scorpion toxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1zywA00
1JKZA 3E7RL 2NY9X 1ZVEA 1SN1A 2MZ0A 1WWNA 2YC1C 1PTXA 2YEOA 1I2UA 4AAZA 1JZBA 1AHOA 1N4NA 4HE7A 5KK4A 2E3FA 1I6FA 1NRBA 1ZYWA 1ICAA 1VNAA 1I2VA 1T1TA 4HHFA 1SEGA 1T7EA 2GL1A 1MYNA 1L4VA 1PE4A 5CY0A 2I61A 1GPTA 1KV0A 1P0AA 1C55A 2KBKA 1B7DA 1VNBA 2KGQA 1OZZA 1NE5A 1BMRA 1NH5A 1GPSA 1ZUTA 2LT8A 1OMYA 2LKBA 1T0ZA 2NY8X 4KYPA 2KBJA 1FH3A 1MR4A 1CHZA 1T7AA 2LI7A 1BCGA 2ASCA 4UJ0A 2SN3A 2E0HA 2KPYA 2KYQA 1P00A 2LY6A 4V1DC 1BRZA 1CN2A 2E3GA 1LQHA 1LQIA 1PX9A 1ZFUA 1T7BA 2N69A 2ATBA 1LQQA 2KSKA 2YBRC 4AEIA 1SN4A 1C56A 4CQKA 1NPIA 2N2QA 3E7UX 1JZAA 1JXCA 2N66A 1BK8A 1NRAA 1DQ7A 4AB0A 2B3CA 1WMTA 1SNBA 1B3CA 2KJAA 2LR3A 2BRZA 3PSMA 2M8BB 1I6GA 1WT7A 1ZVGA 2N2RA 1ZYVA 2LY5A 2A7TA 2B68A 1AYJA 2LJMA 1TI5A 2KBHA 1DJTA 2LJ7A 1ZU3A
chains in the Genus database with same CATH superfamily
1QQMA 3E7RL 1JKZA 2NY9X 3CW4A 3SF4D 1ZVEA 2GMOA 3GKUA 5AQTA 4UADE 5AQWA 3FZHA 3M3ZA 1SN1A 1NGIA 2MZ0A 2YILA 1S3XA 1WWNA 3KOYA 3QI7A 1ATSA 2YC1C 4GNIA 5AQHA 1PTXA 5F0XA 1ATRA 2YEOA 2QWQA 1I2UA 3KOWA 4AAZA 4UAFE 1NGHA 1JZBA 3C7NB 5AQNA 5AQZA 1QQOA 1AHOA 1N4NA 1NGBA 4HE7A 5KK4A 3QFUA 2E3FA 1I6FA 1NRBA 1ZYWA 4H5VA 1ICAA 1VNAA 2G2KA 5AQFA 5BN8A 2VY6A 1I2VA 1T1TA 2QXLA 5AQOA 2V7ZA 3L56A 3LDNA 4FSVA 4HHFA 5FPNA 1SEGA 1T7EA 4FL9A 3C7NA 3GL1A 2GL1A 5AQIA 5AQSA 1MYNA 1QQNA 3LDQA 3ATVA 1L4VA 5AQLA 1PE4A 5FPEA 1BA1A 2YIPA 5CY0A 2I61A 3KC6A 5AQJA 5AQMA 2JDQD 1KAXA 3D2FB 1GPTA 1BA0A 1KV0A 3D2EB 1P0AA 1NGAA 1C55A 2KBKA 1B7DA 1VNBA 5AQPA 2KGQA 1OZZA 1NE5A 3LDPA 1YUWA 5AQGA 1BMRA 1NH5A 2QWOA 1ZUTA 2LT8A 1GPSA 3HSCA 3KP1A 5AR0A 1OMYA 4KBOA 2LKBA 3L4IA 1T0ZA 2NY8X 3D2FA 2QWMA 4KYPA 3D2EA 3FE1A 1BUPA 2KBJA 1FH3A 3QFPA 1NGCA 4H5WA 1MR4A 3BK3C 3KP0A 1CHZA 1T7AA 2LI7A 2E8AA 1UGLA 1BCGA 2ASCA 1XRSB 2SN3A 4H5TA 4UJ0A 2E0HA 2KPYA 2KYQA 1HPMA 1P00A 1DKGD 2LY6A 4V1DC 2KHOA 5AQYA 3FZMA 1BRZA 1CN2A 2E3GA 2QWPA 3KVGA 1LQHA 4H5NA 3L6QA 1K8BA 1LQIA 2MBKA 5AQKA 1PX9A 1ZFUA 2D56A 3ATUA 1T7BA 2N69A 2BUPA 2ATBA 3LDLA 3KOXA 1LQQA 2KSKA 2YBRC 1NGFA 5EXWA 5BN9A 4AEIA 1SN4A 5BPLA 1NGDA 1C56A 5EVZA 3AY9A 2QWNA 3KOZA 5BPNA 2QWLA 4CQKA 3FZKA 1NPIA 1KAZA 2N2QA 1HX1A 1JZAA 3E7UX 3GDQA 1JXCA 5EX5A 2N66A 1BK8A 5AQUA 2K35A 4HWIA 1NRAA 1DQ7A 3IUCA 4AB0A 1POIA 3CQXA 1KAYA 2B3CA 1NGJA 1WMTA 5FPMA 3FZFA 5AQRA 4UAEF 3LDOA 1SNBA 5AQQA 1B3CA 2KJAA 3KHWA 2LR3A 1NGGA 2BRZA 5F2RA 3PSMA 3R2VA 2M8BB 1I6GA 1WT7A 2YIOA 4IO8A 5AQXA 1ZVGA 2MN5A 5FPDA 5AQVA 3A8YA 2QWRA 2N2RA 3JXUA 1ZYVA 2LY5A 4H5RA 3FZLA 2E2FA 1HJOA 2A7TA 2B68A 5F1XA 1AYJA 2LJMA 5BPMA 2E88A 1TI5A 1NGEA 3I33A 3QMLA 2KBHA 2LN8A 1DJTA 5EY4A 2LJ7A 2QW9A 1ZU3A
chains in the Genus database with same CATH topology
1JKZA 3E7RL 2NY9X 1ZVEA 1SN1A 2MZ0A 1WWNA 2YC1C 1PTXA 2YEOA 1I2UA 4AAZA 1JZBA 1AHOA 1N4NA 4HE7A 5KK4A 2E3FA 1I6FA 1NRBA 1ZYWA 1ICAA 1VNAA 1I2VA 1T1TA 4HHFA 1SEGA 1T7EA 2GL1A 1MYNA 1L4VA 1PE4A 5CY0A 2I61A 1GPTA 1KV0A 1P0AA 1C55A 2KBKA 1B7DA 1VNBA 2KGQA 1OZZA 1NE5A 1BMRA 1NH5A 1GPSA 1ZUTA 2LT8A 1OMYA 2LKBA 1T0ZA 2NY8X 4KYPA 2KBJA 1FH3A 1MR4A 1CHZA 1T7AA 2LI7A 1BCGA 2ASCA 4UJ0A 2SN3A 2E0HA 2KPYA 2KYQA 1P00A 2LY6A 4V1DC 1BRZA 1CN2A 2E3GA 1LQHA 1LQIA 1PX9A 1ZFUA 1T7BA 2N69A 2ATBA 1LQQA 2KSKA 2YBRC 4AEIA 1SN4A 1C56A 4CQKA 1NPIA 2N2QA 3E7UX 1JZAA 1JXCA 2N66A 1BK8A 1NRAA 1DQ7A 4AB0A 2B3CA 1WMTA 1SNBA 1B3CA 2KJAA 2LR3A 2BRZA 3PSMA 2M8BB 1I6GA 1WT7A 1ZVGA 2N2RA 1ZYVA 2LY5A 2A7TA 2B68A 1AYJA 2LJMA 1TI5A 2KBHA 1DJTA 2LJ7A 1ZU3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JKZ A;  3E7R L;  2NY9 X;  1ZVE A;  1SN1 A;  2MZ0 A;  1WWN A;  2YC1 C;  1PTX A;  2YEO A;  1I2U A;  4AAZ A;  1JZB A;  1AHO A;  1N4N A;  4HE7 A;  5KK4 A;  2E3F A;  1I6F A;  1NRB A;  1ZYW A;  1ICA A;  1VNA A;  1I2V A;  1T1T A;  4HHF A;  1SEG A;  1T7E A;  2GL1 A;  1MYN A;  1L4V A;  1PE4 A;  5CY0 A;  2I61 A;  1GPT A;  1KV0 A;  1P0A A;  1C55 A;  2KBK A;  1B7D A;  1VNB A;  2KGQ A;  1OZZ A;  1NE5 A;  1BMR A;  1NH5 A;  1GPS A;  1ZUT A;  2LT8 A;  1OMY A;  2LKB A;  1T0Z A;  2NY8 X;  4KYP A;  2KBJ A;  1FH3 A;  1MR4 A;  1CHZ A;  1T7A A;  2LI7 A;  1BCG A;  2ASC A;  4UJ0 A;  2SN3 A;  2E0H A;  2KPY A;  2KYQ A;  1P00 A;  2LY6 A;  4V1D C;  1BRZ A;  1CN2 A;  2E3G A;  1LQH A;  1LQI A;  1PX9 A;  1ZFU A;  1T7B A;  2N69 A;  2ATB A;  1LQQ A;  2KSK A;  2YBR C;  4AEI A;  1SN4 A;  1C56 A;  4CQK A;  1NPI A;  2N2Q A;  3E7U X;  1JZA A;  1JXC A;  2N66 A;  1BK8 A;  1NRA A;  1DQ7 A;  4AB0 A;  2B3C A;  1WMT A;  1SNB A;  1B3C A;  2KJA A;  2LR3 A;  2BRZ A;  3PSM A;  2M8B B;  1I6G A;  1WT7 A;  1ZVG A;  2N2R A;  1ZYV A;  2LY5 A;  2A7T A;  2B68 A;  1AYJ A;  2LJM A;  1TI5 A;  2KBH A;  1DJT A;  2LJ7 A;  1ZU3 A; 
#chains in the Genus database with same CATH topology
 1QQM A;  3E7R L;  1JKZ A;  2NY9 X;  3CW4 A;  3SF4 D;  1ZVE A;  2GMO A;  3GKU A;  5AQT A;  4UAD E;  5AQW A;  3FZH A;  3M3Z A;  1SN1 A;  1NGI A;  2MZ0 A;  2YIL A;  1S3X A;  1WWN A;  3KOY A;  3QI7 A;  1ATS A;  2YC1 C;  4GNI A;  5AQH A;  1PTX A;  5F0X A;  1ATR A;  2YEO A;  2QWQ A;  1I2U A;  3KOW A;  4AAZ A;  4UAF E;  1NGH A;  1JZB A;  3C7N B;  5AQN A;  5AQZ A;  1QQO A;  1AHO A;  1N4N A;  1NGB A;  4HE7 A;  5KK4 A;  3QFU A;  2E3F A;  1I6F A;  1NRB A;  1ZYW A;  4H5V A;  1ICA A;  1VNA A;  2G2K A;  5AQF A;  5BN8 A;  2VY6 A;  1I2V A;  1T1T A;  2QXL A;  5AQO A;  2V7Z A;  3L56 A;  3LDN A;  4FSV A;  4HHF A;  5FPN A;  1SEG A;  1T7E A;  4FL9 A;  3C7N A;  3GL1 A;  2GL1 A;  5AQI A;  5AQS A;  1MYN A;  1QQN A;  3LDQ A;  3ATV A;  1L4V A;  5AQL A;  1PE4 A;  5FPE A;  1BA1 A;  2YIP A;  5CY0 A;  2I61 A;  3KC6 A;  5AQJ A;  5AQM A;  2JDQ D;  1KAX A;  3D2F B;  1GPT A;  1BA0 A;  1KV0 A;  3D2E B;  1P0A A;  1NGA A;  1C55 A;  2KBK A;  1B7D A;  1VNB A;  5AQP A;  2KGQ A;  1OZZ A;  1NE5 A;  3LDP A;  1YUW A;  5AQG A;  1BMR A;  1NH5 A;  2QWO A;  1ZUT A;  2LT8 A;  1GPS A;  3HSC A;  3KP1 A;  5AR0 A;  1OMY A;  4KBO A;  2LKB A;  3L4I A;  1T0Z A;  2NY8 X;  3D2F A;  2QWM A;  4KYP A;  3D2E A;  3FE1 A;  1BUP A;  2KBJ A;  1FH3 A;  3QFP A;  1NGC A;  4H5W A;  1MR4 A;  3BK3 C;  3KP0 A;  1CHZ A;  1T7A A;  2LI7 A;  2E8A A;  1UGL A;  1BCG A;  2ASC A;  1XRS B;  2SN3 A;  4H5T A;  4UJ0 A;  2E0H A;  2KPY A;  2KYQ A;  1HPM A;  1P00 A;  1DKG D;  2LY6 A;  4V1D C;  2KHO A;  5AQY A;  3FZM A;  1BRZ A;  1CN2 A;  2E3G A;  2QWP A;  3KVG A;  1LQH A;  4H5N A;  3L6Q A;  1K8B A;  1LQI A;  2MBK A;  5AQK A;  1PX9 A;  1ZFU A;  2D56 A;  3ATU A;  1T7B A;  2N69 A;  2BUP A;  2ATB A;  3LDL A;  3KOX A;  1LQQ A;  2KSK A;  2YBR C;  1NGF A;  5EXW A;  5BN9 A;  4AEI A;  1SN4 A;  5BPL A;  1NGD A;  1C56 A;  5EVZ A;  3AY9 A;  2QWN A;  3KOZ A;  5BPN A;  2QWL A;  4CQK A;  3FZK A;  1NPI A;  1KAZ A;  2N2Q A;  1HX1 A;  1JZA A;  3E7U X;  3GDQ A;  1JXC A;  5EX5 A;  2N66 A;  1BK8 A;  5AQU A;  2K35 A;  4HWI A;  1NRA A;  1DQ7 A;  3IUC A;  4AB0 A;  1POI A;  3CQX A;  1KAY A;  2B3C A;  1NGJ A;  1WMT A;  5FPM A;  3FZF A;  5AQR A;  4UAE F;  3LDO A;  1SNB A;  5AQQ A;  1B3C A;  2KJA A;  3KHW A;  2LR3 A;  1NGG A;  2BRZ A;  5F2R A;  3PSM A;  3R2V A;  2M8B B;  1I6G A;  1WT7 A;  2YIO A;  4IO8 A;  5AQX A;  1ZVG A;  2MN5 A;  5FPD A;  5AQV A;  3A8Y A;  2QWR A;  2N2R A;  3JXU A;  1ZYV A;  2LY5 A;  4H5R A;  3FZL A;  2E2F A;  1HJO A;  2A7T A;  2B68 A;  5F1X A;  1AYJ A;  2LJM A;  5BPM A;  2E88 A;  1TI5 A;  1NGE A;  3I33 A;  3QML A;  2KBH A;  2LN8 A;  1DJT A;  5EY4 A;  2LJ7 A;  2QW9 A;  1ZU3 A; 
#chains in the Genus database with same CATH homology
 1JKZ A;  3E7R L;  2NY9 X;  1ZVE A;  1SN1 A;  2MZ0 A;  1WWN A;  2YC1 C;  1PTX A;  2YEO A;  1I2U A;  4AAZ A;  1JZB A;  1AHO A;  1N4N A;  4HE7 A;  5KK4 A;  2E3F A;  1I6F A;  1NRB A;  1ZYW A;  1ICA A;  1VNA A;  1I2V A;  1T1T A;  4HHF A;  1SEG A;  1T7E A;  2GL1 A;  1MYN A;  1L4V A;  1PE4 A;  5CY0 A;  2I61 A;  1GPT A;  1KV0 A;  1P0A A;  1C55 A;  2KBK A;  1B7D A;  1VNB A;  2KGQ A;  1OZZ A;  1NE5 A;  1BMR A;  1NH5 A;  1GPS A;  1ZUT A;  2LT8 A;  1OMY A;  2LKB A;  1T0Z A;  2NY8 X;  4KYP A;  2KBJ A;  1FH3 A;  1MR4 A;  1CHZ A;  1T7A A;  2LI7 A;  1BCG A;  2ASC A;  4UJ0 A;  2SN3 A;  2E0H A;  2KPY A;  2KYQ A;  1P00 A;  2LY6 A;  4V1D C;  1BRZ A;  1CN2 A;  2E3G A;  1LQH A;  1LQI A;  1PX9 A;  1ZFU A;  1T7B A;  2N69 A;  2ATB A;  1LQQ A;  2KSK A;  2YBR C;  4AEI A;  1SN4 A;  1C56 A;  4CQK A;  1NPI A;  2N2Q A;  3E7U X;  1JZA A;  1JXC A;  2N66 A;  1BK8 A;  1NRA A;  1DQ7 A;  4AB0 A;  2B3C A;  1WMT A;  1SNB A;  1B3C A;  2KJA A;  2LR3 A;  2BRZ A;  3PSM A;  2M8B B;  1I6G A;  1WT7 A;  1ZVG A;  2N2R A;  1ZYV A;  2LY5 A;  2A7T A;  2B68 A;  1AYJ A;  2LJM A;  1TI5 A;  2KBH A;  1DJT A;  2LJ7 A;  1ZU3 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...