1ZYWA

Crystal structure of mutant k8dp9sr58kp60g of scorpion alpha-like neurotoxin bmk m1 from buthus martensii karsch
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
66
structure length
66
Chain Sequence
NSVRDAYIADSHNCVYECARNEYCNDLCTKNGAKSGYCQWVGKYGNGCWCIELPDNVPIKVGGKCH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
source organism Mesobuthus martensii
publication title Structural basis for the voltage-gated Na+ channel selectivity of the scorpion alpha-like toxin BmK M1
pubmed doi rcsb
molecule keywords Alpha-like neurotoxin BmK-I
total genus 18
structure length 66
sequence length 66
ec nomenclature
pdb deposition date 2005-06-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00537 Toxin_3 Scorpion toxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1zywA00
1CHZA 3E7UX 1I2UA 1T7BA 1BRZA 1CN2A 1NRAA 1GPSA 4V1DC 1NRBA 2GL1A 2E3GA 2LT8A 1JZBA 1BK8A 1I6FA 1I2VA 2LR3A 1T7AA 2YEOA 1ZUTA 1DQ7A 1DJTA 1LQQA 1JKZA 2KBJA 1KV0A 2LI7A 1OZZA 2E3FA 1N4NA 1C55A 2LKBA 1C56A 2BRZA 1ZVGA 2A7TA 1I6GA 1PTXA 2LY5A 4CQKA 2KPYA 3PSMA 1ICAA 1ZFUA 1AHOA 1WWNA 2ASCA 1JZAA 4UJ0A 2KGQA 3E7RL 1NE5A 1ZU3A 1NH5A 4HE7A 1P0AA 2LJ7A 2YBRC 2KBHA 2KJAA 1MYNA 1ZYVA 5KK4A 1BMRA 2ATBA 1WMTA 2B3CA 4HHFA 1FH3A 2I61A 2LJMA 4AEIA 1ZYWA 2KSKA 2N2QA 5CY0A 1SNBA 2B68A 1B7DA 1SEGA 2M8BB 1JXCA 1ZVEA 1T7EA 1VNBA 2KYQA 1BCGA 2N69A 2LY6A 1AYJA 1SN1A 1LQIA 1OMYA 2N66A 1VNAA 1PE4A 1GPTA 1PX9A 4AB0A 1WT7A 1L4VA 2YC1C 2SN3A 2KBKA 1P00A 1B3CA 2MZ0A 1SN4A 2NY8X 1MR4A 1T1TA 4AAZA 1NPIA 2N2RA 2NY9X 1T0ZA 2E0HA 1LQHA 4KYPA 1TI5A
chains in the Genus database with same CATH superfamily
2VY6A 1CHZA 5F1XA 3E7UX 3LDLA 3C7NA 1T7BA 3FZHA 2V7ZA 5F2RA 3GKUA 1I2UA 3FZKA 1BRZA 3FE1A 3GDQA 5AQFA 2LN8A 3KOYA 1HX1A 3D2EA 1CN2A 1NRAA 2BUPA 4V1DC 1NRBA 3KVGA 1GPSA 2GL1A 1KAXA 3KOZA 5AQMA 1ATSA 5EX5A 2E3GA 2LT8A 1JZBA 5EVZA 5BPLA 3LDNA 1UGLA 1YUWA 5AQZA 1BK8A 3FZMA 1NGBA 1I6FA 4FL9A 2LR3A 1I2VA 1K8BA 2QWQA 3C7NB 1BA0A 1T7AA 2KHOA 2QWOA 2YEOA 3QI7A 3CW4A 5EY4A 5AQXA 5AQUA 3LDQA 1ZUTA 1DQ7A 1NGGA 1DJTA 5AQHA 1LQQA 5FPEA 2MBKA 3KOXA 1JKZA 1BA1A 2KBJA 2JDQD 1KV0A 3M3ZA 2LI7A 5AQYA 5AQWA 1OZZA 2E3FA 1N4NA 1C55A 2LKBA 5BPNA 5FPDA 2QWLA 1C56A 2BRZA 2E2FA 1ZVGA 2A7TA 5AQJA 5AQOA 5AQGA 1XRSB 2GMOA 2YIPA 1I6GA 1PTXA 4H5WA 5AQNA 2LY5A 4CQKA 2KPYA 3L4IA 3PSMA 1ICAA 1ZFUA 4GNIA 5AQPA 1AHOA 1QQMA 1WWNA 2ASCA 3D2FA 1JZAA 3ATUA 4UJ0A 3HSCA 1NGIA 2KGQA 3E7RL 3AY9A 1NE5A 1ZU3A 1QQNA 3LDOA 4UAFE 1NH5A 5AQLA 4HE7A 5EXWA 5BN9A 1P0AA 2LJ7A 2YBRC 2KBHA 3I33A 1MYNA 1ZYVA 2KJAA 3D2EB 5KK4A 1BMRA 1BUPA 2ATBA 2YIOA 1WMTA 1ATRA 3FZFA 3QFPA 4H5NA 3SF4D 2D56A 1HJOA 1POIA 2B3CA 4HHFA 5AR0A 5AQVA 3LDPA 1FH3A 2I61A 3IUCA 3KOWA 4KBOA 3D2FB 2E88A 2LJMA 4IO8A 2G2KA 1ZYWA 4AEIA 3L56A 2KSKA 2QWPA 2N2QA 5CY0A 1SNBA 3KP1A 4H5TA 3QMLA 2B68A 1B7DA 1KAYA 1NGHA 1QQOA 3L6QA 2E8AA 1SEGA 3JXUA 5BN8A 3R2VA 3A8YA 1S3XA 1NGJA 2M8BB 1JXCA 1ZVEA 3KHWA 1T7EA 3KC6A 3QFUA 1VNBA 2KYQA 1NGDA 1BCGA 2N69A 4H5RA 2LY6A 5AQKA 5AQQA 1AYJA 1SN1A 1LQIA 5AQSA 1NGAA 3KP0A 4FSVA 1OMYA 2N66A 1VNAA 4UAEF 1PE4A 1GPTA 5AQRA 1PX9A 4AB0A 4HWIA 1WT7A 1NGCA 2QWMA 2QWNA 3GL1A 5AQTA 1NGEA 1L4VA 5FPNA 2K35A 2MN5A 4H5VA 2YC1C 2SN3A 2KBKA 1HPMA 3CQXA 2QWRA 5F0XA 1P00A 1B3CA 2MZ0A 1SN4A 2NY8X 3FZLA 1MR4A 1T1TA 5FPMA 4AAZA 1DKGD 5AQIA 1NPIA 5BPMA 4UADE 2N2RA 3ATVA 2NY9X 1NGFA 3BK3C 1KAZA 1T0ZA 2E0HA 2QW9A 2YILA 1LQHA 4KYPA 2QXLA 1TI5A
chains in the Genus database with same CATH topology
1CHZA 3E7UX 1I2UA 1T7BA 1BRZA 1CN2A 1NRAA 1GPSA 4V1DC 1NRBA 2GL1A 2E3GA 2LT8A 1JZBA 1BK8A 1I6FA 1I2VA 2LR3A 1T7AA 2YEOA 1ZUTA 1DQ7A 1DJTA 1LQQA 1JKZA 2KBJA 1KV0A 2LI7A 1OZZA 2E3FA 1N4NA 1C55A 2LKBA 1C56A 2BRZA 1ZVGA 2A7TA 1I6GA 1PTXA 2LY5A 4CQKA 2KPYA 3PSMA 1ICAA 1ZFUA 1AHOA 1WWNA 2ASCA 1JZAA 4UJ0A 2KGQA 3E7RL 1NE5A 1ZU3A 1NH5A 4HE7A 1P0AA 2LJ7A 2YBRC 2KBHA 2KJAA 1MYNA 1ZYVA 5KK4A 1BMRA 2ATBA 1WMTA 2B3CA 4HHFA 1FH3A 2I61A 2LJMA 4AEIA 1ZYWA 2KSKA 2N2QA 5CY0A 1SNBA 2B68A 1B7DA 1SEGA 2M8BB 1JXCA 1ZVEA 1T7EA 1VNBA 2KYQA 1BCGA 2N69A 2LY6A 1AYJA 1SN1A 1LQIA 1OMYA 2N66A 1VNAA 1PE4A 1GPTA 1PX9A 4AB0A 1WT7A 1L4VA 2YC1C 2SN3A 2KBKA 1P00A 1B3CA 2MZ0A 1SN4A 2NY8X 1MR4A 1T1TA 4AAZA 1NPIA 2N2RA 2NY9X 1T0ZA 2E0HA 1LQHA 4KYPA 1TI5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CHZ A;  3E7U X;  1I2U A;  1T7B A;  1BRZ A;  1CN2 A;  1NRA A;  1GPS A;  4V1D C;  1NRB A;  2GL1 A;  2E3G A;  2LT8 A;  1JZB A;  1BK8 A;  1I6F A;  1I2V A;  2LR3 A;  1T7A A;  2YEO A;  1ZUT A;  1DQ7 A;  1DJT A;  1LQQ A;  1JKZ A;  2KBJ A;  1KV0 A;  2LI7 A;  1OZZ A;  2E3F A;  1N4N A;  1C55 A;  2LKB A;  1C56 A;  2BRZ A;  1ZVG A;  2A7T A;  1I6G A;  1PTX A;  2LY5 A;  4CQK A;  2KPY A;  3PSM A;  1ICA A;  1ZFU A;  1AHO A;  1WWN A;  2ASC A;  1JZA A;  4UJ0 A;  2KGQ A;  3E7R L;  1NE5 A;  1ZU3 A;  1NH5 A;  4HE7 A;  1P0A A;  2LJ7 A;  2YBR C;  2KBH A;  2KJA A;  1MYN A;  1ZYV A;  5KK4 A;  1BMR A;  2ATB A;  1WMT A;  2B3C A;  4HHF A;  1FH3 A;  2I61 A;  2LJM A;  4AEI A;  1ZYW A;  2KSK A;  2N2Q A;  5CY0 A;  1SNB A;  2B68 A;  1B7D A;  1SEG A;  2M8B B;  1JXC A;  1ZVE A;  1T7E A;  1VNB A;  2KYQ A;  1BCG A;  2N69 A;  2LY6 A;  1AYJ A;  1SN1 A;  1LQI A;  1OMY A;  2N66 A;  1VNA A;  1PE4 A;  1GPT A;  1PX9 A;  4AB0 A;  1WT7 A;  1L4V A;  2YC1 C;  2SN3 A;  2KBK A;  1P00 A;  1B3C A;  2MZ0 A;  1SN4 A;  2NY8 X;  1MR4 A;  1T1T A;  4AAZ A;  1NPI A;  2N2R A;  2NY9 X;  1T0Z A;  2E0H A;  1LQH A;  4KYP A;  1TI5 A; 
#chains in the Genus database with same CATH topology
 2VY6 A;  1CHZ A;  5F1X A;  3E7U X;  3LDL A;  3C7N A;  1T7B A;  3FZH A;  2V7Z A;  5F2R A;  3GKU A;  1I2U A;  3FZK A;  1BRZ A;  3FE1 A;  3GDQ A;  5AQF A;  2LN8 A;  3KOY A;  1HX1 A;  3D2E A;  1CN2 A;  1NRA A;  2BUP A;  4V1D C;  1NRB A;  3KVG A;  1GPS A;  2GL1 A;  1KAX A;  3KOZ A;  5AQM A;  1ATS A;  5EX5 A;  2E3G A;  2LT8 A;  1JZB A;  5EVZ A;  5BPL A;  3LDN A;  1UGL A;  1YUW A;  5AQZ A;  1BK8 A;  3FZM A;  1NGB A;  1I6F A;  4FL9 A;  2LR3 A;  1I2V A;  1K8B A;  2QWQ A;  3C7N B;  1BA0 A;  1T7A A;  2KHO A;  2QWO A;  2YEO A;  3QI7 A;  3CW4 A;  5EY4 A;  5AQX A;  5AQU A;  3LDQ A;  1ZUT A;  1DQ7 A;  1NGG A;  1DJT A;  5AQH A;  1LQQ A;  5FPE A;  2MBK A;  3KOX A;  1JKZ A;  1BA1 A;  2KBJ A;  2JDQ D;  1KV0 A;  3M3Z A;  2LI7 A;  5AQY A;  5AQW A;  1OZZ A;  2E3F A;  1N4N A;  1C55 A;  2LKB A;  5BPN A;  5FPD A;  2QWL A;  1C56 A;  2BRZ A;  2E2F A;  1ZVG A;  2A7T A;  5AQJ A;  5AQO A;  5AQG A;  1XRS B;  2GMO A;  2YIP A;  1I6G A;  1PTX A;  4H5W A;  5AQN A;  2LY5 A;  4CQK A;  2KPY A;  3L4I A;  3PSM A;  1ICA A;  1ZFU A;  4GNI A;  5AQP A;  1AHO A;  1QQM A;  1WWN A;  2ASC A;  3D2F A;  1JZA A;  3ATU A;  4UJ0 A;  3HSC A;  1NGI A;  2KGQ A;  3E7R L;  3AY9 A;  1NE5 A;  1ZU3 A;  1QQN A;  3LDO A;  4UAF E;  1NH5 A;  5AQL A;  4HE7 A;  5EXW A;  5BN9 A;  1P0A A;  2LJ7 A;  2YBR C;  2KBH A;  3I33 A;  1MYN A;  1ZYV A;  2KJA A;  3D2E B;  5KK4 A;  1BMR A;  1BUP A;  2ATB A;  2YIO A;  1WMT A;  1ATR A;  3FZF A;  3QFP A;  4H5N A;  3SF4 D;  2D56 A;  1HJO A;  1POI A;  2B3C A;  4HHF A;  5AR0 A;  5AQV A;  3LDP A;  1FH3 A;  2I61 A;  3IUC A;  3KOW A;  4KBO A;  3D2F B;  2E88 A;  2LJM A;  4IO8 A;  2G2K A;  1ZYW A;  4AEI A;  3L56 A;  2KSK A;  2QWP A;  2N2Q A;  5CY0 A;  1SNB A;  3KP1 A;  4H5T A;  3QML A;  2B68 A;  1B7D A;  1KAY A;  1NGH A;  1QQO A;  3L6Q A;  2E8A A;  1SEG A;  3JXU A;  5BN8 A;  3R2V A;  3A8Y A;  1S3X A;  1NGJ A;  2M8B B;  1JXC A;  1ZVE A;  3KHW A;  1T7E A;  3KC6 A;  3QFU A;  1VNB A;  2KYQ A;  1NGD A;  1BCG A;  2N69 A;  4H5R A;  2LY6 A;  5AQK A;  5AQQ A;  1AYJ A;  1SN1 A;  1LQI A;  5AQS A;  1NGA A;  3KP0 A;  4FSV A;  1OMY A;  2N66 A;  1VNA A;  4UAE F;  1PE4 A;  1GPT A;  5AQR A;  1PX9 A;  4AB0 A;  4HWI A;  1WT7 A;  1NGC A;  2QWM A;  2QWN A;  3GL1 A;  5AQT A;  1NGE A;  1L4V A;  5FPN A;  2K35 A;  2MN5 A;  4H5V A;  2YC1 C;  2SN3 A;  2KBK A;  1HPM A;  3CQX A;  2QWR A;  5F0X A;  1P00 A;  1B3C A;  2MZ0 A;  1SN4 A;  2NY8 X;  3FZL A;  1MR4 A;  1T1T A;  5FPM A;  4AAZ A;  1DKG D;  5AQI A;  1NPI A;  5BPM A;  4UAD E;  2N2R A;  3ATV A;  2NY9 X;  1NGF A;  3BK3 C;  1KAZ A;  1T0Z A;  2E0H A;  2QW9 A;  2YIL A;  1LQH A;  4KYP A;  2QXL A;  1TI5 A; 
#chains in the Genus database with same CATH homology
 1CHZ A;  3E7U X;  1I2U A;  1T7B A;  1BRZ A;  1CN2 A;  1NRA A;  1GPS A;  4V1D C;  1NRB A;  2GL1 A;  2E3G A;  2LT8 A;  1JZB A;  1BK8 A;  1I6F A;  1I2V A;  2LR3 A;  1T7A A;  2YEO A;  1ZUT A;  1DQ7 A;  1DJT A;  1LQQ A;  1JKZ A;  2KBJ A;  1KV0 A;  2LI7 A;  1OZZ A;  2E3F A;  1N4N A;  1C55 A;  2LKB A;  1C56 A;  2BRZ A;  1ZVG A;  2A7T A;  1I6G A;  1PTX A;  2LY5 A;  4CQK A;  2KPY A;  3PSM A;  1ICA A;  1ZFU A;  1AHO A;  1WWN A;  2ASC A;  1JZA A;  4UJ0 A;  2KGQ A;  3E7R L;  1NE5 A;  1ZU3 A;  1NH5 A;  4HE7 A;  1P0A A;  2LJ7 A;  2YBR C;  2KBH A;  2KJA A;  1MYN A;  1ZYV A;  5KK4 A;  1BMR A;  2ATB A;  1WMT A;  2B3C A;  4HHF A;  1FH3 A;  2I61 A;  2LJM A;  4AEI A;  1ZYW A;  2KSK A;  2N2Q A;  5CY0 A;  1SNB A;  2B68 A;  1B7D A;  1SEG A;  2M8B B;  1JXC A;  1ZVE A;  1T7E A;  1VNB A;  2KYQ A;  1BCG A;  2N69 A;  2LY6 A;  1AYJ A;  1SN1 A;  1LQI A;  1OMY A;  2N66 A;  1VNA A;  1PE4 A;  1GPT A;  1PX9 A;  4AB0 A;  1WT7 A;  1L4V A;  2YC1 C;  2SN3 A;  2KBK A;  1P00 A;  1B3C A;  2MZ0 A;  1SN4 A;  2NY8 X;  1MR4 A;  1T1T A;  4AAZ A;  1NPI A;  2N2R A;  2NY9 X;  1T0Z A;  2E0H A;  1LQH A;  4KYP A;  1TI5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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