1SNBA

Structure of scorpion neurotoxin bmk m8
Total Genus 14
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
64
structure length
64
Chain Sequence
GRDAYIADSENCTYFCGSNPYCNDVCTENGAKSGYCQWAGRYGNACYCIDLPASERIKEGGRCG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Neurotoxin
molecule keywords NEUROTOXIN BMK M8
publication title Crystal structure of an acidic neurotoxin from scorpion Buthus martensii Karsch at 1.85 A resolution.
pubmed doi rcsb
total genus 14
structure length 64
sequence length 64
ec nomenclature
pdb deposition date 1997-03-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00537 Toxin_3 Scorpion toxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1snbA00
1ZYVA 1DJTA 2E3FA 4CQKA 2LT8A 1PE4A 2YC1C 1P00A 1SN4A 1BCGA 1B7DA 1ZYWA 1AYJA 1WT7A 1LQIA 2YEOA 1MR4A 2N69A 2BRZA 4HE7A 1VNBA 2N66A 1GPTA 1FH3A 1JZAA 2LJMA 1OMYA 2KSKA 1WWNA 2N2QA 1T7BA 1T7AA 2LR3A 1JZBA 1SNBA 1C56A 4UJ0A 1OZZA 1T7EA 1T0ZA 1ZUTA 1LQHA 2E0HA 1NRAA 1ICAA 2B68A 4AAZA 1SEGA 5KK4A 2LY6A 4AEIA 1MYNA 1VNAA 1N4NA 1B3CA 4KYPA 1JXCA 1I2UA 2SN3A 2KJAA 2KYQA 2ASCA 1JKZA 1PX9A 2M8BB 1I2VA 1P0AA 1I6FA 1NH5A 2N2RA 1PTXA 4V1DC 1ZVEA 3PSMA 2LKBA 2KPYA 4HHFA 1AHOA 1ZU3A 1T1TA 1BK8A 2B3CA 5CY0A 1NPIA 2ATBA 1C55A 2NY9X 2LY5A 1GPSA 1CN2A 1TI5A 1KV0A 2YBRC 1DQ7A 2KGQA 2LI7A 1ZVGA 4AB0A 1L4VA 1SN1A 2GL1A 1CHZA 1NRBA 2MZ0A 2KBHA 2KBJA 2KBKA 1LQQA 3E7UX 1BMRA 1ZFUA 2A7TA 1NE5A 1WMTA 2E3GA 2LJ7A 1I6GA 1BRZA 2NY8X 3E7RL 2I61A
chains in the Genus database with same CATH superfamily
4H5TA 1ZYVA 1DJTA 1QQNA 3KOYA 2QWMA 5AQLA 2E3FA 3CW4A 3C7NB 2LT8A 1PE4A 2YC1C 5AQFA 4FL9A 5AQGA 4CQKA 3L6QA 1P00A 1SN4A 2K35A 1BCGA 5FPNA 1YUWA 1B7DA 2E8AA 2YIOA 3C7NA 1ZYWA 3AY9A 3FE1A 1AYJA 1WT7A 1LQIA 2QWPA 2YEOA 1MR4A 2N69A 2QWLA 1QQOA 2BRZA 4HE7A 1VNBA 2N66A 5FPEA 3D2FB 1GPTA 1FH3A 1NGHA 1JZAA 1OMYA 2LJMA 2KSKA 3D2EB 1WWNA 2N2QA 3QFPA 3I33A 2BUPA 3D2FA 5AQHA 1T7BA 5AQMA 1ATSA 2QW9A 1T7AA 2LN8A 2LR3A 3FZLA 1JZBA 3D2EA 1BA0A 1HX1A 3KOXA 1SNBA 3LDOA 1C56A 3GDQA 5AQZA 4UJ0A 1HJOA 1OZZA 1T7EA 5AQPA 1T0ZA 1NGJA 1POIA 1ZUTA 3KOWA 3GKUA 4H5VA 1LQHA 2E0HA 2QWRA 1NRAA 2QWQA 4KBOA 1ICAA 1NGIA 2KHOA 2B68A 1K8BA 3KOZA 5AQTA 4AAZA 3M3ZA 3FZHA 1KAXA 3LDQA 5AQVA 1NGEA 1SEGA 3KP1A 1UGLA 4UADE 5KK4A 1ATRA 5AQSA 1NGFA 2LY6A 1KAYA 2V7ZA 3ATUA 2QWOA 4AEIA 1XRSB 1MYNA 1QQMA 1VNAA 1NGGA 5BN8A 1N4NA 3KP0A 4UAFE 1B3CA 4KYPA 3LDPA 1BA1A 2GMOA 1JXCA 5EVZA 1I2UA 2QWNA 1HPMA 3JXUA 2SN3A 5AQOA 5F2RA 2KJAA 2KYQA 3CQXA 2ASCA 1JKZA 1PX9A 2M8BB 1KAZA 1P0AA 5BPLA 5EXWA 1I2VA 1I6FA 1NH5A 2E2FA 2N2RA 3BK3C 1PTXA 5AQUA 4V1DC 3KC6A 2G2KA 4H5NA 1ZVEA 3PSMA 4GNIA 5AQJA 5FPDA 2MBKA 5AQIA 2LKBA 2KPYA 3HSCA 3GL1A 4H5RA 4HHFA 1AHOA 2YILA 1ZU3A 1T1TA 1BK8A 2B3CA 5CY0A 1NPIA 2ATBA 4IO8A 1BUPA 4H5WA 2VY6A 1C55A 2NY9X 5AQXA 2LY5A 3LDLA 1GPSA 1CN2A 1TI5A 2MN5A 4FSVA 3SF4D 1KV0A 2JDQD 3IUCA 2YBRC 5FPMA 1DQ7A 3QMLA 3FZFA 1NGCA 4HWIA 5AQYA 2KGQA 2LI7A 1ZVGA 3KVGA 4AB0A 5AQKA 1L4VA 5BPNA 1SN1A 1DKGD 3L56A 5AQNA 1NGAA 2GL1A 3KHWA 1CHZA 5AR0A 1NRBA 3FZKA 2MZ0A 2KBHA 2KBJA 4UAEF 3A8YA 5F0XA 5EX5A 2KBKA 3QFUA 1LQQA 3E7UX 1BMRA 1ZFUA 2A7TA 5AQWA 1NE5A 1WMTA 2E3GA 2E88A 2LJ7A 2QXLA 5AQRA 1I6GA 3LDNA 3QI7A 3FZMA 5EY4A 1BRZA 5BPMA 1NGDA 2NY8X 3ATVA 1NGBA 3L4IA 5F1XA 5AQQA 5BN9A 1S3XA 2D56A 3E7RL 3R2VA 2I61A 2YIPA
chains in the Genus database with same CATH topology
1ZYVA 1DJTA 2E3FA 4CQKA 2LT8A 1PE4A 2YC1C 1P00A 1SN4A 1BCGA 1B7DA 1ZYWA 1AYJA 1WT7A 1LQIA 2YEOA 1MR4A 2N69A 2BRZA 4HE7A 1VNBA 2N66A 1GPTA 1FH3A 1JZAA 2LJMA 1OMYA 2KSKA 1WWNA 2N2QA 1T7BA 1T7AA 2LR3A 1JZBA 1SNBA 1C56A 4UJ0A 1OZZA 1T7EA 1T0ZA 1ZUTA 1LQHA 2E0HA 1NRAA 1ICAA 2B68A 4AAZA 1SEGA 5KK4A 2LY6A 4AEIA 1MYNA 1VNAA 1N4NA 1B3CA 4KYPA 1JXCA 1I2UA 2SN3A 2KJAA 2KYQA 2ASCA 1JKZA 1PX9A 2M8BB 1I2VA 1P0AA 1I6FA 1NH5A 2N2RA 1PTXA 4V1DC 1ZVEA 3PSMA 2LKBA 2KPYA 4HHFA 1AHOA 1ZU3A 1T1TA 1BK8A 2B3CA 5CY0A 1NPIA 2ATBA 1C55A 2NY9X 2LY5A 1GPSA 1CN2A 1TI5A 1KV0A 2YBRC 1DQ7A 2KGQA 2LI7A 1ZVGA 4AB0A 1L4VA 1SN1A 2GL1A 1CHZA 1NRBA 2MZ0A 2KBHA 2KBJA 2KBKA 1LQQA 3E7UX 1BMRA 1ZFUA 2A7TA 1NE5A 1WMTA 2E3GA 2LJ7A 1I6GA 1BRZA 2NY8X 3E7RL 2I61A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZYV A;  1DJT A;  2E3F A;  4CQK A;  2LT8 A;  1PE4 A;  2YC1 C;  1P00 A;  1SN4 A;  1BCG A;  1B7D A;  1ZYW A;  1AYJ A;  1WT7 A;  1LQI A;  2YEO A;  1MR4 A;  2N69 A;  2BRZ A;  4HE7 A;  1VNB A;  2N66 A;  1GPT A;  1FH3 A;  1JZA A;  2LJM A;  1OMY A;  2KSK A;  1WWN A;  2N2Q A;  1T7B A;  1T7A A;  2LR3 A;  1JZB A;  1SNB A;  1C56 A;  4UJ0 A;  1OZZ A;  1T7E A;  1T0Z A;  1ZUT A;  1LQH A;  2E0H A;  1NRA A;  1ICA A;  2B68 A;  4AAZ A;  1SEG A;  5KK4 A;  2LY6 A;  4AEI A;  1MYN A;  1VNA A;  1N4N A;  1B3C A;  4KYP A;  1JXC A;  1I2U A;  2SN3 A;  2KJA A;  2KYQ A;  2ASC A;  1JKZ A;  1PX9 A;  2M8B B;  1I2V A;  1P0A A;  1I6F A;  1NH5 A;  2N2R A;  1PTX A;  4V1D C;  1ZVE A;  3PSM A;  2LKB A;  2KPY A;  4HHF A;  1AHO A;  1ZU3 A;  1T1T A;  1BK8 A;  2B3C A;  5CY0 A;  1NPI A;  2ATB A;  1C55 A;  2NY9 X;  2LY5 A;  1GPS A;  1CN2 A;  1TI5 A;  1KV0 A;  2YBR C;  1DQ7 A;  2KGQ A;  2LI7 A;  1ZVG A;  4AB0 A;  1L4V A;  1SN1 A;  2GL1 A;  1CHZ A;  1NRB A;  2MZ0 A;  2KBH A;  2KBJ A;  2KBK A;  1LQQ A;  3E7U X;  1BMR A;  1ZFU A;  2A7T A;  1NE5 A;  1WMT A;  2E3G A;  2LJ7 A;  1I6G A;  1BRZ A;  2NY8 X;  3E7R L;  2I61 A; 
#chains in the Genus database with same CATH topology
 4H5T A;  1ZYV A;  1DJT A;  1QQN A;  3KOY A;  2QWM A;  5AQL A;  2E3F A;  3CW4 A;  3C7N B;  2LT8 A;  1PE4 A;  2YC1 C;  5AQF A;  4FL9 A;  5AQG A;  4CQK A;  3L6Q A;  1P00 A;  1SN4 A;  2K35 A;  1BCG A;  5FPN A;  1YUW A;  1B7D A;  2E8A A;  2YIO A;  3C7N A;  1ZYW A;  3AY9 A;  3FE1 A;  1AYJ A;  1WT7 A;  1LQI A;  2QWP A;  2YEO A;  1MR4 A;  2N69 A;  2QWL A;  1QQO A;  2BRZ A;  4HE7 A;  1VNB A;  2N66 A;  5FPE A;  3D2F B;  1GPT A;  1FH3 A;  1NGH A;  1JZA A;  1OMY A;  2LJM A;  2KSK A;  3D2E B;  1WWN A;  2N2Q A;  3QFP A;  3I33 A;  2BUP A;  3D2F A;  5AQH A;  1T7B A;  5AQM A;  1ATS A;  2QW9 A;  1T7A A;  2LN8 A;  2LR3 A;  3FZL A;  1JZB A;  3D2E A;  1BA0 A;  1HX1 A;  3KOX A;  1SNB A;  3LDO A;  1C56 A;  3GDQ A;  5AQZ A;  4UJ0 A;  1HJO A;  1OZZ A;  1T7E A;  5AQP A;  1T0Z A;  1NGJ A;  1POI A;  1ZUT A;  3KOW A;  3GKU A;  4H5V A;  1LQH A;  2E0H A;  2QWR A;  1NRA A;  2QWQ A;  4KBO A;  1ICA A;  1NGI A;  2KHO A;  2B68 A;  1K8B A;  3KOZ A;  5AQT A;  4AAZ A;  3M3Z A;  3FZH A;  1KAX A;  3LDQ A;  5AQV A;  1NGE A;  1SEG A;  3KP1 A;  1UGL A;  4UAD E;  5KK4 A;  1ATR A;  5AQS A;  1NGF A;  2LY6 A;  1KAY A;  2V7Z A;  3ATU A;  2QWO A;  4AEI A;  1XRS B;  1MYN A;  1QQM A;  1VNA A;  1NGG A;  5BN8 A;  1N4N A;  3KP0 A;  4UAF E;  1B3C A;  4KYP A;  3LDP A;  1BA1 A;  2GMO A;  1JXC A;  5EVZ A;  1I2U A;  2QWN A;  1HPM A;  3JXU A;  2SN3 A;  5AQO A;  5F2R A;  2KJA A;  2KYQ A;  3CQX A;  2ASC A;  1JKZ A;  1PX9 A;  2M8B B;  1KAZ A;  1P0A A;  5BPL A;  5EXW A;  1I2V A;  1I6F A;  1NH5 A;  2E2F A;  2N2R A;  3BK3 C;  1PTX A;  5AQU A;  4V1D C;  3KC6 A;  2G2K A;  4H5N A;  1ZVE A;  3PSM A;  4GNI A;  5AQJ A;  5FPD A;  2MBK A;  5AQI A;  2LKB A;  2KPY A;  3HSC A;  3GL1 A;  4H5R A;  4HHF A;  1AHO A;  2YIL A;  1ZU3 A;  1T1T A;  1BK8 A;  2B3C A;  5CY0 A;  1NPI A;  2ATB A;  4IO8 A;  1BUP A;  4H5W A;  2VY6 A;  1C55 A;  2NY9 X;  5AQX A;  2LY5 A;  3LDL A;  1GPS A;  1CN2 A;  1TI5 A;  2MN5 A;  4FSV A;  3SF4 D;  1KV0 A;  2JDQ D;  3IUC A;  2YBR C;  5FPM A;  1DQ7 A;  3QML A;  3FZF A;  1NGC A;  4HWI A;  5AQY A;  2KGQ A;  2LI7 A;  1ZVG A;  3KVG A;  4AB0 A;  5AQK A;  1L4V A;  5BPN A;  1SN1 A;  1DKG D;  3L56 A;  5AQN A;  1NGA A;  2GL1 A;  3KHW A;  1CHZ A;  5AR0 A;  1NRB A;  3FZK A;  2MZ0 A;  2KBH A;  2KBJ A;  4UAE F;  3A8Y A;  5F0X A;  5EX5 A;  2KBK A;  3QFU A;  1LQQ A;  3E7U X;  1BMR A;  1ZFU A;  2A7T A;  5AQW A;  1NE5 A;  1WMT A;  2E3G A;  2E88 A;  2LJ7 A;  2QXL A;  5AQR A;  1I6G A;  3LDN A;  3QI7 A;  3FZM A;  5EY4 A;  1BRZ A;  5BPM A;  1NGD A;  2NY8 X;  3ATV A;  1NGB A;  3L4I A;  5F1X A;  5AQQ A;  5BN9 A;  1S3X A;  2D56 A;  3E7R L;  3R2V A;  2I61 A;  2YIP A; 
#chains in the Genus database with same CATH homology
 1ZYV A;  1DJT A;  2E3F A;  4CQK A;  2LT8 A;  1PE4 A;  2YC1 C;  1P00 A;  1SN4 A;  1BCG A;  1B7D A;  1ZYW A;  1AYJ A;  1WT7 A;  1LQI A;  2YEO A;  1MR4 A;  2N69 A;  2BRZ A;  4HE7 A;  1VNB A;  2N66 A;  1GPT A;  1FH3 A;  1JZA A;  2LJM A;  1OMY A;  2KSK A;  1WWN A;  2N2Q A;  1T7B A;  1T7A A;  2LR3 A;  1JZB A;  1SNB A;  1C56 A;  4UJ0 A;  1OZZ A;  1T7E A;  1T0Z A;  1ZUT A;  1LQH A;  2E0H A;  1NRA A;  1ICA A;  2B68 A;  4AAZ A;  1SEG A;  5KK4 A;  2LY6 A;  4AEI A;  1MYN A;  1VNA A;  1N4N A;  1B3C A;  4KYP A;  1JXC A;  1I2U A;  2SN3 A;  2KJA A;  2KYQ A;  2ASC A;  1JKZ A;  1PX9 A;  2M8B B;  1I2V A;  1P0A A;  1I6F A;  1NH5 A;  2N2R A;  1PTX A;  4V1D C;  1ZVE A;  3PSM A;  2LKB A;  2KPY A;  4HHF A;  1AHO A;  1ZU3 A;  1T1T A;  1BK8 A;  2B3C A;  5CY0 A;  1NPI A;  2ATB A;  1C55 A;  2NY9 X;  2LY5 A;  1GPS A;  1CN2 A;  1TI5 A;  1KV0 A;  2YBR C;  1DQ7 A;  2KGQ A;  2LI7 A;  1ZVG A;  4AB0 A;  1L4V A;  1SN1 A;  2GL1 A;  1CHZ A;  1NRB A;  2MZ0 A;  2KBH A;  2KBJ A;  2KBK A;  1LQQ A;  3E7U X;  1BMR A;  1ZFU A;  2A7T A;  1NE5 A;  1WMT A;  2E3G A;  2LJ7 A;  1I6G A;  1BRZ A;  2NY8 X;  3E7R L;  2I61 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...