2E3GA

Nmr structure of def-daa, a mutant of anopheles defensin def-aaa
Total Genus 4
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
40
structure length
40
Chain Sequence
ATCDLASKWNWNHTLCAAHCIARRYRGGYCNSKAVCVCRN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Antimicrobial protein
molecule keywords defensin, mutant DEF-DAA
publication title Rational design of peptides active against the gram positive bacteria Staphylococcus aureus
pubmed doi rcsb
source organism Anopheles gambiae
total genus 4
structure length 40
sequence length 40
ec nomenclature
pdb deposition date 2006-11-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01097 Defensin_2 Arthropod defensin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 2e3gA00
2I61A 2A7TA 1I6GA 4UJ0A 1PX9A 1I2VA 1VNBA 1SN4A 1AHOA 2N66A 1ZFUA 1KV0A 1GPTA 5CY0A 2N2RA 4AB0A 4V1DC 1JZAA 1ZVGA 2YBRC 2B3CA 2ATBA 1LQHA 2GL1A 2M8BB 1SNBA 2YC1C 1ICAA 1JZBA 2N69A 1NRBA 1BRZA 3E7UX 2YEOA 2LKBA 2BRZA 1T7EA 3PSMA 1AYJA 2B68A 3E7RL 1BK8A 1LQQA 1WMTA 1T0ZA 2KBHA 2NY8X 1P0AA 2MZ0A 1ZUTA 1PE4A 2LY5A 1T1TA 1MYNA 4HHFA 1ZU3A 1SN1A 1C55A 2LJ7A 1CHZA 5KK4A 4CQKA 1OMYA 1B3CA 1MR4A 1LQIA 1BCGA 2NY9X 1L4VA 1SEGA 1ZYWA 2LR3A 1ZVEA 1FH3A 1WWNA 1T7AA 2E3FA 1NRAA 2N2QA 1NPIA 1VNAA 1DQ7A 1OZZA 2KYQA 1ZYVA 2KPYA 1TI5A 1B7DA 1I6FA 2LY6A 1N4NA 1JKZA 2SN3A 4KYPA 2KBKA 1GPSA 2LJMA 1BMRA 4HE7A 1WT7A 2KGQA 4AEIA 2E3GA 2LI7A 1T7BA 1I2UA 1P00A 1PTXA 2E0HA 1NE5A 2LT8A 1CN2A 1C56A 1JXCA 2KSKA 1DJTA 2KBJA 4AAZA 2KJAA 1NH5A 2ASCA
chains in the Genus database with same CATH superfamily
4H5RA 4H5WA 5AQKA 5F0XA 2I61A 1NGJA 5EX5A 3KP1A 5F1XA 2E88A 2LN8A 5F2RA 2A7TA 5AQPA 5AQSA 4UJ0A 3GKUA 1I6GA 1PX9A 3BK3C 5AQQA 3LDPA 5AQOA 1I2VA 3D2EA 2YIPA 1VNBA 1QQOA 1SN4A 2KHOA 3QFPA 1AHOA 2N66A 3KVGA 5AQHA 1BUPA 3R2VA 1ATSA 1ZFUA 4FSVA 3D2EB 3LDQA 1KV0A 1GPTA 1DKGD 2QWPA 3QMLA 2G2KA 5CY0A 2N2RA 5AQJA 3C7NA 4AB0A 2QW9A 3FZLA 2QWRA 4V1DC 1ATRA 1JZAA 3JXUA 1ZVGA 1HPMA 3KP0A 3L6QA 2YBRC 1KAYA 2ATBA 1LQHA 2B3CA 5FPNA 3GDQA 2GL1A 3KHWA 3CQXA 1HX1A 2M8BB 4FL9A 1S3XA 5AQTA 5FPMA 5BPMA 1SNBA 2YC1C 1NGBA 1ICAA 1JZBA 5BPNA 2N69A 3FE1A 1NRBA 5AQXA 1BRZA 3E7UX 2YEOA 2QWMA 4UAFE 2LKBA 2BRZA 1T7EA 2BUPA 3PSMA 1AYJA 2B68A 2MBKA 3E7RL 3FZMA 4H5TA 1BK8A 1HJOA 1LQQA 1WMTA 1BA1A 3L4IA 1T0ZA 5BN9A 4UAEF 2VY6A 5AQNA 2E8AA 2KBHA 2NY8X 4UADE 5AQRA 5BPLA 1P0AA 2MZ0A 1ZUTA 3LDLA 1YUWA 1PE4A 2LY5A 5FPDA 3KOYA 2YILA 1MYNA 1T1TA 1NGIA 4HHFA 1ZU3A 1SN1A 3SF4D 1C55A 3LDNA 2LJ7A 3GL1A 1NGGA 4H5NA 1CHZA 5KK4A 2MN5A 4CQKA 3ATVA 3M3ZA 1OMYA 3QI7A 2QWOA 5AQUA 2E2FA 3FZKA 3I33A 1MR4A 1LQIA 2QWQA 1BCGA 3LDOA 2NY9X 5FPEA 1B3CA 2QWLA 2JDQD 4IO8A 5EXWA 1L4VA 1SEGA 1ZYWA 5AQFA 2LR3A 1KAXA 1NGDA 1ZVEA 1FH3A 1WWNA 1T7AA 2GMOA 1QQNA 1BA0A 2E3FA 1NRAA 4KBOA 1POIA 1QQMA 2N2QA 3IUCA 4HWIA 1NPIA 2K35A 5AQMA 1VNAA 3KOXA 1NGCA 1DQ7A 1OZZA 2KYQA 1NGFA 1ZYVA 2KPYA 3KOWA 5AQIA 1TI5A 5EVZA 1B7DA 2QWNA 2V7ZA 1I6FA 2LY6A 3QFUA 5AQGA 3D2FA 1N4NA 3CW4A 1JKZA 2SN3A 1NGAA 1XRSB 4KYPA 1K8BA 2KBKA 1GPSA 5AQLA 1NGEA 2LJMA 5AQWA 3D2FB 1NGHA 1WT7A 2KGQA 3KOZA 4GNIA 4HE7A 4AEIA 3KC6A 4H5VA 2E3GA 2LI7A 1T7BA 5AR0A 5AQZA 1I2UA 1P00A 1PTXA 2E0HA 1NE5A 2QXLA 3FZFA 2LT8A 1CN2A 1C56A 5AQYA 1JXCA 3ATUA 2KSKA 1DJTA 2KBJA 3L56A 3AY9A 4AAZA 2D56A 5EY4A 3HSCA 2KJAA 1BMRA 1UGLA 1NH5A 3FZHA 5AQVA 5BN8A 3A8YA 2ASCA 3C7NB 2YIOA 1KAZA
chains in the Genus database with same CATH topology
2I61A 2A7TA 1I6GA 4UJ0A 1PX9A 1I2VA 1VNBA 1SN4A 1AHOA 2N66A 1ZFUA 1KV0A 1GPTA 5CY0A 2N2RA 4AB0A 4V1DC 1JZAA 1ZVGA 2YBRC 2B3CA 2ATBA 1LQHA 2GL1A 2M8BB 1SNBA 2YC1C 1ICAA 1JZBA 2N69A 1NRBA 1BRZA 3E7UX 2YEOA 2LKBA 2BRZA 1T7EA 3PSMA 1AYJA 2B68A 3E7RL 1BK8A 1LQQA 1WMTA 1T0ZA 2KBHA 2NY8X 1P0AA 2MZ0A 1ZUTA 1PE4A 2LY5A 1T1TA 1MYNA 4HHFA 1ZU3A 1SN1A 1C55A 2LJ7A 1CHZA 5KK4A 4CQKA 1OMYA 1B3CA 1MR4A 1LQIA 1BCGA 2NY9X 1L4VA 1SEGA 1ZYWA 2LR3A 1ZVEA 1FH3A 1WWNA 1T7AA 2E3FA 1NRAA 2N2QA 1NPIA 1VNAA 1DQ7A 1OZZA 2KYQA 1ZYVA 2KPYA 1TI5A 1B7DA 1I6FA 2LY6A 1N4NA 1JKZA 2SN3A 4KYPA 2KBKA 1GPSA 2LJMA 1BMRA 4HE7A 1WT7A 2KGQA 4AEIA 2E3GA 2LI7A 1T7BA 1I2UA 1P00A 1PTXA 2E0HA 1NE5A 2LT8A 1CN2A 1C56A 1JXCA 2KSKA 1DJTA 2KBJA 4AAZA 2KJAA 1NH5A 2ASCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2I61 A;  2A7T A;  1I6G A;  4UJ0 A;  1PX9 A;  1I2V A;  1VNB A;  1SN4 A;  1AHO A;  2N66 A;  1ZFU A;  1KV0 A;  1GPT A;  5CY0 A;  2N2R A;  4AB0 A;  4V1D C;  1JZA A;  1ZVG A;  2YBR C;  2B3C A;  2ATB A;  1LQH A;  2GL1 A;  2M8B B;  1SNB A;  2YC1 C;  1ICA A;  1JZB A;  2N69 A;  1NRB A;  1BRZ A;  3E7U X;  2YEO A;  2LKB A;  2BRZ A;  1T7E A;  3PSM A;  1AYJ A;  2B68 A;  3E7R L;  1BK8 A;  1LQQ A;  1WMT A;  1T0Z A;  2KBH A;  2NY8 X;  1P0A A;  2MZ0 A;  1ZUT A;  1PE4 A;  2LY5 A;  1T1T A;  1MYN A;  4HHF A;  1ZU3 A;  1SN1 A;  1C55 A;  2LJ7 A;  1CHZ A;  5KK4 A;  4CQK A;  1OMY A;  1B3C A;  1MR4 A;  1LQI A;  1BCG A;  2NY9 X;  1L4V A;  1SEG A;  1ZYW A;  2LR3 A;  1ZVE A;  1FH3 A;  1WWN A;  1T7A A;  2E3F A;  1NRA A;  2N2Q A;  1NPI A;  1VNA A;  1DQ7 A;  1OZZ A;  2KYQ A;  1ZYV A;  2KPY A;  1TI5 A;  1B7D A;  1I6F A;  2LY6 A;  1N4N A;  1JKZ A;  2SN3 A;  4KYP A;  2KBK A;  1GPS A;  2LJM A;  1BMR A;  4HE7 A;  1WT7 A;  2KGQ A;  4AEI A;  2E3G A;  2LI7 A;  1T7B A;  1I2U A;  1P00 A;  1PTX A;  2E0H A;  1NE5 A;  2LT8 A;  1CN2 A;  1C56 A;  1JXC A;  2KSK A;  1DJT A;  2KBJ A;  4AAZ A;  2KJA A;  1NH5 A;  2ASC A; 
#chains in the Genus database with same CATH topology
 4H5R A;  4H5W A;  5AQK A;  5F0X A;  2I61 A;  1NGJ A;  5EX5 A;  3KP1 A;  5F1X A;  2E88 A;  2LN8 A;  5F2R A;  2A7T A;  5AQP A;  5AQS A;  4UJ0 A;  3GKU A;  1I6G A;  1PX9 A;  3BK3 C;  5AQQ A;  3LDP A;  5AQO A;  1I2V A;  3D2E A;  2YIP A;  1VNB A;  1QQO A;  1SN4 A;  2KHO A;  3QFP A;  1AHO A;  2N66 A;  3KVG A;  5AQH A;  1BUP A;  3R2V A;  1ATS A;  1ZFU A;  4FSV A;  3D2E B;  3LDQ A;  1KV0 A;  1GPT A;  1DKG D;  2QWP A;  3QML A;  2G2K A;  5CY0 A;  2N2R A;  5AQJ A;  3C7N A;  4AB0 A;  2QW9 A;  3FZL A;  2QWR A;  4V1D C;  1ATR A;  1JZA A;  3JXU A;  1ZVG A;  1HPM A;  3KP0 A;  3L6Q A;  2YBR C;  1KAY A;  2ATB A;  1LQH A;  2B3C A;  5FPN A;  3GDQ A;  2GL1 A;  3KHW A;  3CQX A;  1HX1 A;  2M8B B;  4FL9 A;  1S3X A;  5AQT A;  5FPM A;  5BPM A;  1SNB A;  2YC1 C;  1NGB A;  1ICA A;  1JZB A;  5BPN A;  2N69 A;  3FE1 A;  1NRB A;  5AQX A;  1BRZ A;  3E7U X;  2YEO A;  2QWM A;  4UAF E;  2LKB A;  2BRZ A;  1T7E A;  2BUP A;  3PSM A;  1AYJ A;  2B68 A;  2MBK A;  3E7R L;  3FZM A;  4H5T A;  1BK8 A;  1HJO A;  1LQQ A;  1WMT A;  1BA1 A;  3L4I A;  1T0Z A;  5BN9 A;  4UAE F;  2VY6 A;  5AQN A;  2E8A A;  2KBH A;  2NY8 X;  4UAD E;  5AQR A;  5BPL A;  1P0A A;  2MZ0 A;  1ZUT A;  3LDL A;  1YUW A;  1PE4 A;  2LY5 A;  5FPD A;  3KOY A;  2YIL A;  1MYN A;  1T1T A;  1NGI A;  4HHF A;  1ZU3 A;  1SN1 A;  3SF4 D;  1C55 A;  3LDN A;  2LJ7 A;  3GL1 A;  1NGG A;  4H5N A;  1CHZ A;  5KK4 A;  2MN5 A;  4CQK A;  3ATV A;  3M3Z A;  1OMY A;  3QI7 A;  2QWO A;  5AQU A;  2E2F A;  3FZK A;  3I33 A;  1MR4 A;  1LQI A;  2QWQ A;  1BCG A;  3LDO A;  2NY9 X;  5FPE A;  1B3C A;  2QWL A;  2JDQ D;  4IO8 A;  5EXW A;  1L4V A;  1SEG A;  1ZYW A;  5AQF A;  2LR3 A;  1KAX A;  1NGD A;  1ZVE A;  1FH3 A;  1WWN A;  1T7A A;  2GMO A;  1QQN A;  1BA0 A;  2E3F A;  1NRA A;  4KBO A;  1POI A;  1QQM A;  2N2Q A;  3IUC A;  4HWI A;  1NPI A;  2K35 A;  5AQM A;  1VNA A;  3KOX A;  1NGC A;  1DQ7 A;  1OZZ A;  2KYQ A;  1NGF A;  1ZYV A;  2KPY A;  3KOW A;  5AQI A;  1TI5 A;  5EVZ A;  1B7D A;  2QWN A;  2V7Z A;  1I6F A;  2LY6 A;  3QFU A;  5AQG A;  3D2F A;  1N4N A;  3CW4 A;  1JKZ A;  2SN3 A;  1NGA A;  1XRS B;  4KYP A;  1K8B A;  2KBK A;  1GPS A;  5AQL A;  1NGE A;  2LJM A;  5AQW A;  3D2F B;  1NGH A;  1WT7 A;  2KGQ A;  3KOZ A;  4GNI A;  4HE7 A;  4AEI A;  3KC6 A;  4H5V A;  2E3G A;  2LI7 A;  1T7B A;  5AR0 A;  5AQZ A;  1I2U A;  1P00 A;  1PTX A;  2E0H A;  1NE5 A;  2QXL A;  3FZF A;  2LT8 A;  1CN2 A;  1C56 A;  5AQY A;  1JXC A;  3ATU A;  2KSK A;  1DJT A;  2KBJ A;  3L56 A;  3AY9 A;  4AAZ A;  2D56 A;  5EY4 A;  3HSC A;  2KJA A;  1BMR A;  1UGL A;  1NH5 A;  3FZH A;  5AQV A;  5BN8 A;  3A8Y A;  2ASC A;  3C7N B;  2YIO A;  1KAZ A; 
#chains in the Genus database with same CATH homology
 2I61 A;  2A7T A;  1I6G A;  4UJ0 A;  1PX9 A;  1I2V A;  1VNB A;  1SN4 A;  1AHO A;  2N66 A;  1ZFU A;  1KV0 A;  1GPT A;  5CY0 A;  2N2R A;  4AB0 A;  4V1D C;  1JZA A;  1ZVG A;  2YBR C;  2B3C A;  2ATB A;  1LQH A;  2GL1 A;  2M8B B;  1SNB A;  2YC1 C;  1ICA A;  1JZB A;  2N69 A;  1NRB A;  1BRZ A;  3E7U X;  2YEO A;  2LKB A;  2BRZ A;  1T7E A;  3PSM A;  1AYJ A;  2B68 A;  3E7R L;  1BK8 A;  1LQQ A;  1WMT A;  1T0Z A;  2KBH A;  2NY8 X;  1P0A A;  2MZ0 A;  1ZUT A;  1PE4 A;  2LY5 A;  1T1T A;  1MYN A;  4HHF A;  1ZU3 A;  1SN1 A;  1C55 A;  2LJ7 A;  1CHZ A;  5KK4 A;  4CQK A;  1OMY A;  1B3C A;  1MR4 A;  1LQI A;  1BCG A;  2NY9 X;  1L4V A;  1SEG A;  1ZYW A;  2LR3 A;  1ZVE A;  1FH3 A;  1WWN A;  1T7A A;  2E3F A;  1NRA A;  2N2Q A;  1NPI A;  1VNA A;  1DQ7 A;  1OZZ A;  2KYQ A;  1ZYV A;  2KPY A;  1TI5 A;  1B7D A;  1I6F A;  2LY6 A;  1N4N A;  1JKZ A;  2SN3 A;  4KYP A;  2KBK A;  1GPS A;  2LJM A;  1BMR A;  4HE7 A;  1WT7 A;  2KGQ A;  4AEI A;  2E3G A;  2LI7 A;  1T7B A;  1I2U A;  1P00 A;  1PTX A;  2E0H A;  1NE5 A;  2LT8 A;  1CN2 A;  1C56 A;  1JXC A;  2KSK A;  1DJT A;  2KBJ A;  4AAZ A;  2KJA A;  1NH5 A;  2ASC A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...