2B68A

Solution structure of the recombinant crassostrea gigas defensin
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
43
structure length
43
Chain Sequence
GFGCPGNQLKCNNHCKSISCRAGYCDAATLWLRCTCTDCNGKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antimicrobial protein
source organism Crassostrea gigas
publication title Characterization of a Defensin from the Oyster Crassostrea gigas: recombinant production, folding, solution structure, antimicrobial activities and gene expression
pubmed doi rcsb
molecule keywords defensin
total genus 6
structure length 43
sequence length 43
ec nomenclature
pdb deposition date 2005-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01097 Defensin_2 Arthropod defensin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 2b68A01
4V1DC 2LKBA 1P00A 1ICAA 5CY0A 2LJMA 2B3CA 1MR4A 2LI7A 2M8BB 2E3FA 3E7UX 1NRBA 2A7TA 1ZYWA 1T1TA 1L4VA 1PX9A 1SN1A 1GPSA 1NRAA 5KK4A 2YBRC 1OZZA 4CQKA 2B68A 2N2RA 1NPIA 1KV0A 2KPYA 1JXCA 2GL1A 4HHFA 1JZBA 4AAZA 1BRZA 2KSKA 1WMTA 1DJTA 2SN3A 1SNBA 1VNBA 4AB0A 2KJAA 1BCGA 1SN4A 2YEOA 2LT8A 2BRZA 1PE4A 2MZ0A 1JKZA 1I6FA 4HE7A 1LQQA 1C55A 1AHOA 1ZFUA 2N2QA 2E0HA 2KGQA 1B3CA 2LY5A 1ZVGA 1NE5A 1B7DA 1JZAA 1LQHA 4AEIA 1WWNA 3E7RL 1SEGA 1C56A 1AYJA 4KYPA 1LQIA 1BK8A 2NY8X 1FH3A 1OMYA 1TI5A 1MYNA 1T7BA 1NH5A 1VNAA 2ATBA 2LY6A 1ZUTA 1T0ZA 1I2UA 1T7EA 2N69A 1P0AA 3PSMA 1BMRA 1PTXA 2I61A 2LR3A 1I2VA 2KBJA 1ZVEA 1T7AA 1N4NA 2KBHA 1WT7A 4UJ0A 2N66A 1ZU3A 1DQ7A 2KYQA 1CHZA 2NY9X 2ASCA 1I6GA 2KBKA 1GPTA 1ZYVA 1CN2A 2LJ7A 2YC1C 2E3GA
chains in the Genus database with same CATH superfamily
4V1DC 5AQHA 1KAXA 2LKBA 5AQOA 4IO8A 1P00A 1ICAA 5CY0A 2E2FA 3KP0A 2LJMA 3A8YA 2B3CA 1MR4A 3C7NA 2LI7A 3LDLA 5AQQA 3LDPA 2M8BB 2E3FA 3E7UX 1NRBA 1NGCA 1XRSB 2A7TA 1ZYWA 1QQOA 1T1TA 2QXLA 3L6QA 3LDNA 5AQUA 3FZMA 1L4VA 1PX9A 1NGFA 1SN1A 5F0XA 1GPSA 1NRAA 5KK4A 2YILA 3IUCA 2YBRC 1OZZA 3CW4A 3FZKA 4CQKA 1BA0A 2B68A 2N2RA 5BPNA 1NPIA 1HJOA 3JXUA 5AQRA 5F2RA 5AQLA 5BN9A 5AQSA 1KV0A 2KPYA 5AQPA 1JXCA 1ATRA 2MBKA 2GL1A 1NGBA 4HHFA 1JZBA 4AAZA 1BRZA 2KSKA 1WMTA 1DJTA 5FPDA 2SN3A 3ATUA 1QQMA 1SNBA 2QWOA 1VNBA 1UGLA 4AB0A 2KJAA 1BCGA 1SN4A 2YEOA 2QWNA 2LT8A 4FL9A 1NGHA 3SF4D 2YIPA 2BRZA 2BUPA 1PE4A 5AQIA 5AQKA 2MZ0A 1JKZA 3FZHA 3GKUA 1I6FA 4HE7A 1LQQA 1C55A 1AHOA 1K8BA 3KOWA 1ZFUA 2MN5A 5EY4A 3FZLA 1NGGA 3HSCA 2N2QA 2KHOA 2QWLA 2E0HA 1HPMA 2KGQA 1B3CA 2LY5A 1ZVGA 1NE5A 1B7DA 1JZAA 3R2VA 4H5TA 1LQHA 5FPNA 5AQVA 4AEIA 1WWNA 3E7RL 1SEGA 1C56A 5AQFA 1AYJA 4KYPA 5AQJA 2D56A 1LQIA 3D2EA 2K35A 3FZFA 3QFUA 4H5VA 2GMOA 5F1XA 2QW9A 2NY8X 1BK8A 1FH3A 1OMYA 1TI5A 1MYNA 1T7BA 2QWRA 1NH5A 2YIOA 3KVGA 5AQNA 3QI7A 1ATSA 1VNAA 2ATBA 2LY6A 1ZUTA 1T0ZA 1DKGD 5EVZA 1KAZA 1QQNA 3GL1A 1NGAA 1NGDA 1POIA 2LN8A 3KHWA 1I2UA 1T7EA 3KOZA 4UAFE 4UADE 3ATVA 5EX5A 2N69A 1P0AA 2G2KA 1BA1A 3PSMA 4GNIA 1BMRA 3KP1A 4H5NA 3D2EB 2JDQD 5AQGA 1PTXA 2I61A 5BN8A 3KOXA 5BPLA 5AQZA 1BUPA 1HX1A 4KBOA 3L4IA 4UAEF 5AQXA 5BPMA 2LR3A 4HWIA 1I2VA 5EXWA 2KBJA 1ZVEA 5AQTA 2V7ZA 3D2FB 1T7AA 1N4NA 2QWPA 1NGIA 2KBHA 1WT7A 3L56A 3GDQA 3LDOA 3M3ZA 4UJ0A 5AR0A 2N66A 2QWQA 1NGJA 1ZU3A 1DQ7A 4H5WA 1YUWA 5AQWA 4FSVA 1NGEA 1S3XA 2E88A 2KYQA 1CHZA 2NY9X 3CQXA 5AQYA 4H5RA 2ASCA 3D2FA 5AQMA 2QWMA 3BK3C 1I6GA 2KBKA 1GPTA 1ZYVA 2E8AA 3KOYA 3FE1A 3LDQA 2VY6A 5FPEA 1CN2A 5FPMA 2LJ7A 3C7NB 2YC1C 3I33A 2E3GA 3AY9A 3QFPA 3KC6A 3QMLA 1KAYA
chains in the Genus database with same CATH topology
4V1DC 2LKBA 1P00A 1ICAA 5CY0A 2LJMA 2B3CA 1MR4A 2LI7A 2M8BB 2E3FA 3E7UX 1NRBA 2A7TA 1ZYWA 1T1TA 1L4VA 1PX9A 1SN1A 1GPSA 1NRAA 5KK4A 2YBRC 1OZZA 4CQKA 2B68A 2N2RA 1NPIA 1KV0A 2KPYA 1JXCA 2GL1A 4HHFA 1JZBA 4AAZA 1BRZA 2KSKA 1WMTA 1DJTA 2SN3A 1SNBA 1VNBA 4AB0A 2KJAA 1BCGA 1SN4A 2YEOA 2LT8A 2BRZA 1PE4A 2MZ0A 1JKZA 1I6FA 4HE7A 1LQQA 1C55A 1AHOA 1ZFUA 2N2QA 2E0HA 2KGQA 1B3CA 2LY5A 1ZVGA 1NE5A 1B7DA 1JZAA 1LQHA 4AEIA 1WWNA 3E7RL 1SEGA 1C56A 1AYJA 4KYPA 1LQIA 1BK8A 2NY8X 1FH3A 1OMYA 1TI5A 1MYNA 1T7BA 1NH5A 1VNAA 2ATBA 2LY6A 1ZUTA 1T0ZA 1I2UA 1T7EA 2N69A 1P0AA 3PSMA 1BMRA 1PTXA 2I61A 2LR3A 1I2VA 2KBJA 1ZVEA 1T7AA 1N4NA 2KBHA 1WT7A 4UJ0A 2N66A 1ZU3A 1DQ7A 2KYQA 1CHZA 2NY9X 2ASCA 1I6GA 2KBKA 1GPTA 1ZYVA 1CN2A 2LJ7A 2YC1C 2E3GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4V1D C;  2LKB A;  1P00 A;  1ICA A;  5CY0 A;  2LJM A;  2B3C A;  1MR4 A;  2LI7 A;  2M8B B;  2E3F A;  3E7U X;  1NRB A;  2A7T A;  1ZYW A;  1T1T A;  1L4V A;  1PX9 A;  1SN1 A;  1GPS A;  1NRA A;  5KK4 A;  2YBR C;  1OZZ A;  4CQK A;  2B68 A;  2N2R A;  1NPI A;  1KV0 A;  2KPY A;  1JXC A;  2GL1 A;  4HHF A;  1JZB A;  4AAZ A;  1BRZ A;  2KSK A;  1WMT A;  1DJT A;  2SN3 A;  1SNB A;  1VNB A;  4AB0 A;  2KJA A;  1BCG A;  1SN4 A;  2YEO A;  2LT8 A;  2BRZ A;  1PE4 A;  2MZ0 A;  1JKZ A;  1I6F A;  4HE7 A;  1LQQ A;  1C55 A;  1AHO A;  1ZFU A;  2N2Q A;  2E0H A;  2KGQ A;  1B3C A;  2LY5 A;  1ZVG A;  1NE5 A;  1B7D A;  1JZA A;  1LQH A;  4AEI A;  1WWN A;  3E7R L;  1SEG A;  1C56 A;  1AYJ A;  4KYP A;  1LQI A;  1BK8 A;  2NY8 X;  1FH3 A;  1OMY A;  1TI5 A;  1MYN A;  1T7B A;  1NH5 A;  1VNA A;  2ATB A;  2LY6 A;  1ZUT A;  1T0Z A;  1I2U A;  1T7E A;  2N69 A;  1P0A A;  3PSM A;  1BMR A;  1PTX A;  2I61 A;  2LR3 A;  1I2V A;  2KBJ A;  1ZVE A;  1T7A A;  1N4N A;  2KBH A;  1WT7 A;  4UJ0 A;  2N66 A;  1ZU3 A;  1DQ7 A;  2KYQ A;  1CHZ A;  2NY9 X;  2ASC A;  1I6G A;  2KBK A;  1GPT A;  1ZYV A;  1CN2 A;  2LJ7 A;  2YC1 C;  2E3G A; 
#chains in the Genus database with same CATH topology
 4V1D C;  5AQH A;  1KAX A;  2LKB A;  5AQO A;  4IO8 A;  1P00 A;  1ICA A;  5CY0 A;  2E2F A;  3KP0 A;  2LJM A;  3A8Y A;  2B3C A;  1MR4 A;  3C7N A;  2LI7 A;  3LDL A;  5AQQ A;  3LDP A;  2M8B B;  2E3F A;  3E7U X;  1NRB A;  1NGC A;  1XRS B;  2A7T A;  1ZYW A;  1QQO A;  1T1T A;  2QXL A;  3L6Q A;  3LDN A;  5AQU A;  3FZM A;  1L4V A;  1PX9 A;  1NGF A;  1SN1 A;  5F0X A;  1GPS A;  1NRA A;  5KK4 A;  2YIL A;  3IUC A;  2YBR C;  1OZZ A;  3CW4 A;  3FZK A;  4CQK A;  1BA0 A;  2B68 A;  2N2R A;  5BPN A;  1NPI A;  1HJO A;  3JXU A;  5AQR A;  5F2R A;  5AQL A;  5BN9 A;  5AQS A;  1KV0 A;  2KPY A;  5AQP A;  1JXC A;  1ATR A;  2MBK A;  2GL1 A;  1NGB A;  4HHF A;  1JZB A;  4AAZ A;  1BRZ A;  2KSK A;  1WMT A;  1DJT A;  5FPD A;  2SN3 A;  3ATU A;  1QQM A;  1SNB A;  2QWO A;  1VNB A;  1UGL A;  4AB0 A;  2KJA A;  1BCG A;  1SN4 A;  2YEO A;  2QWN A;  2LT8 A;  4FL9 A;  1NGH A;  3SF4 D;  2YIP A;  2BRZ A;  2BUP A;  1PE4 A;  5AQI A;  5AQK A;  2MZ0 A;  1JKZ A;  3FZH A;  3GKU A;  1I6F A;  4HE7 A;  1LQQ A;  1C55 A;  1AHO A;  1K8B A;  3KOW A;  1ZFU A;  2MN5 A;  5EY4 A;  3FZL A;  1NGG A;  3HSC A;  2N2Q A;  2KHO A;  2QWL A;  2E0H A;  1HPM A;  2KGQ A;  1B3C A;  2LY5 A;  1ZVG A;  1NE5 A;  1B7D A;  1JZA A;  3R2V A;  4H5T A;  1LQH A;  5FPN A;  5AQV A;  4AEI A;  1WWN A;  3E7R L;  1SEG A;  1C56 A;  5AQF A;  1AYJ A;  4KYP A;  5AQJ A;  2D56 A;  1LQI A;  3D2E A;  2K35 A;  3FZF A;  3QFU A;  4H5V A;  2GMO A;  5F1X A;  2QW9 A;  2NY8 X;  1BK8 A;  1FH3 A;  1OMY A;  1TI5 A;  1MYN A;  1T7B A;  2QWR A;  1NH5 A;  2YIO A;  3KVG A;  5AQN A;  3QI7 A;  1ATS A;  1VNA A;  2ATB A;  2LY6 A;  1ZUT A;  1T0Z A;  1DKG D;  5EVZ A;  1KAZ A;  1QQN A;  3GL1 A;  1NGA A;  1NGD A;  1POI A;  2LN8 A;  3KHW A;  1I2U A;  1T7E A;  3KOZ A;  4UAF E;  4UAD E;  3ATV A;  5EX5 A;  2N69 A;  1P0A A;  2G2K A;  1BA1 A;  3PSM A;  4GNI A;  1BMR A;  3KP1 A;  4H5N A;  3D2E B;  2JDQ D;  5AQG A;  1PTX A;  2I61 A;  5BN8 A;  3KOX A;  5BPL A;  5AQZ A;  1BUP A;  1HX1 A;  4KBO A;  3L4I A;  4UAE F;  5AQX A;  5BPM A;  2LR3 A;  4HWI A;  1I2V A;  5EXW A;  2KBJ A;  1ZVE A;  5AQT A;  2V7Z A;  3D2F B;  1T7A A;  1N4N A;  2QWP A;  1NGI A;  2KBH A;  1WT7 A;  3L56 A;  3GDQ A;  3LDO A;  3M3Z A;  4UJ0 A;  5AR0 A;  2N66 A;  2QWQ A;  1NGJ A;  1ZU3 A;  1DQ7 A;  4H5W A;  1YUW A;  5AQW A;  4FSV A;  1NGE A;  1S3X A;  2E88 A;  2KYQ A;  1CHZ A;  2NY9 X;  3CQX A;  5AQY A;  4H5R A;  2ASC A;  3D2F A;  5AQM A;  2QWM A;  3BK3 C;  1I6G A;  2KBK A;  1GPT A;  1ZYV A;  2E8A A;  3KOY A;  3FE1 A;  3LDQ A;  2VY6 A;  5FPE A;  1CN2 A;  5FPM A;  2LJ7 A;  3C7N B;  2YC1 C;  3I33 A;  2E3G A;  3AY9 A;  3QFP A;  3KC6 A;  3QML A;  1KAY A; 
#chains in the Genus database with same CATH homology
 4V1D C;  2LKB A;  1P00 A;  1ICA A;  5CY0 A;  2LJM A;  2B3C A;  1MR4 A;  2LI7 A;  2M8B B;  2E3F A;  3E7U X;  1NRB A;  2A7T A;  1ZYW A;  1T1T A;  1L4V A;  1PX9 A;  1SN1 A;  1GPS A;  1NRA A;  5KK4 A;  2YBR C;  1OZZ A;  4CQK A;  2B68 A;  2N2R A;  1NPI A;  1KV0 A;  2KPY A;  1JXC A;  2GL1 A;  4HHF A;  1JZB A;  4AAZ A;  1BRZ A;  2KSK A;  1WMT A;  1DJT A;  2SN3 A;  1SNB A;  1VNB A;  4AB0 A;  2KJA A;  1BCG A;  1SN4 A;  2YEO A;  2LT8 A;  2BRZ A;  1PE4 A;  2MZ0 A;  1JKZ A;  1I6F A;  4HE7 A;  1LQQ A;  1C55 A;  1AHO A;  1ZFU A;  2N2Q A;  2E0H A;  2KGQ A;  1B3C A;  2LY5 A;  1ZVG A;  1NE5 A;  1B7D A;  1JZA A;  1LQH A;  4AEI A;  1WWN A;  3E7R L;  1SEG A;  1C56 A;  1AYJ A;  4KYP A;  1LQI A;  1BK8 A;  2NY8 X;  1FH3 A;  1OMY A;  1TI5 A;  1MYN A;  1T7B A;  1NH5 A;  1VNA A;  2ATB A;  2LY6 A;  1ZUT A;  1T0Z A;  1I2U A;  1T7E A;  2N69 A;  1P0A A;  3PSM A;  1BMR A;  1PTX A;  2I61 A;  2LR3 A;  1I2V A;  2KBJ A;  1ZVE A;  1T7A A;  1N4N A;  2KBH A;  1WT7 A;  4UJ0 A;  2N66 A;  1ZU3 A;  1DQ7 A;  2KYQ A;  1CHZ A;  2NY9 X;  2ASC A;  1I6G A;  2KBK A;  1GPT A;  1ZYV A;  1CN2 A;  2LJ7 A;  2YC1 C;  2E3G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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