2B68A

Solution structure of the recombinant crassostrea gigas defensin
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
43
structure length
43
Chain Sequence
b'GFGCPGNQLKCNNHCKSISCRAGYCDAATLWLRCTCTDCNGKK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Characterization of a Defensin from the Oyster Crassostrea gigas: recombinant production, folding, solution structure, antimicrobial activities and gene expression
pubmed doi rcsb
molecule keywords defensin
source organism Crassostrea gigas
molecule tags Antimicrobial protein
total genus 6
structure length 43
sequence length 43
ec nomenclature
pdb deposition date 2005-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01097 Defensin_2 Arthropod defensin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 2b68A01
2KYQA 3E7UX 2LR3A 4KYPA 5CY0A 4AAZA 1T7BA 1T0ZA 1B7DA 2KBKA 1VNAA 2I61A 2MZ0A 1SNBA 1C56A 1JZAA 1I6GA 2ASCA 1JXCA 1T7AA 4HHFA 2N69A 1P0AA 2LY5A 3PSMA 1CHZA 2ATBA 3E7RL 1C55A 1JZBA 1PTXA 1NPIA 1GPTA 2GL1A 2YEOA 2KBHA 1VNBA 1ZFUA 1T1TA 1OMYA 1ZU3A 2N66A 1B3CA 1ZYVA 1DQ7A 1NRAA 1TI5A 2YBRC 2KSKA 2LT8A 1MR4A 2A7TA 1ZVGA 2KPYA 1AYJA 2KGQA 4AEIA 2E3FA 1AHOA 1SN1A 1SEGA 1BRZA 1L4VA 1WMTA 2KJAA 1SN4A 1FH3A 1DJTA 4CQKA 1PX9A 2B68A 1BMRA 1WWNA 2LI7A 2YC1C 1GPSA 2E3GA 2B3CA 1BK8A 1WT7A 1LQHA 1OZZA 2LJ7A 2NY9X 2SN3A 2LKBA 1BCGA 1NH5A 1I2UA 1P00A 2LJMA 5KK4A 4V1DC 1KV0A 2N2QA 1ZVEA 1CN2A 4HE7A 2BRZA 4UJ0A 2M8BB 1LQIA 2KBJA 1I6FA 1ZUTA 1PE4A 2E0HA 2NY8X 1NRBA 1JKZA 1LQQA 1ZYWA 2N2RA 1I2VA 4AB0A 2LY6A 1MYNA 1NE5A 1ICAA 1N4NA 1T7EA
chains in the Genus database with same CATH superfamily
2GMOA 1NGDA 3D2EB 4H5WA 3R2VA 3KC6A 3LDPA 2KYQA 4UADE 3E7UX 3KOYA 1NGEA 2LR3A 3HSCA 4KYPA 5CY0A 4AAZA 1T7BA 2G2KA 2YILA 1T0ZA 3KOZA 5F2RA 3SF4D 1B7DA 3KP0A 5FPEA 5AQVA 1KAXA 3GL1A 2KBKA 3BK3C 2QWLA 1VNAA 2I61A 2MZ0A 2YIOA 1SNBA 1C56A 5AQPA 2JDQD 5BN8A 3ATUA 1JZAA 1I6GA 2ASCA 2V7ZA 3KHWA 1JXCA 5AQWA 1T7AA 4HHFA 2N69A 1P0AA 2QWQA 4UAEF 2LY5A 3PSMA 1NGBA 1CHZA 5AQQA 5EY4A 2ATBA 1QQOA 3E7RL 1C55A 1JZBA 3LDLA 1PTXA 1NPIA 3I33A 2GL1A 2YEOA 1GPTA 5AQNA 1HJOA 1ATRA 2KBHA 1VNBA 1ZFUA 1T1TA 1OMYA 1ZU3A 1NGCA 3D2EA 3QFUA 2N66A 1B3CA 1ZYVA 1DQ7A 1NRAA 1HPMA 1ATSA 1TI5A 2YBRC 3LDNA 2KSKA 5FPDA 1YUWA 2LT8A 2QWOA 4H5VA 3FZLA 1MR4A 2A7TA 5BPLA 1ZVGA 2KPYA 2QW9A 1AYJA 2KGQA 4AEIA 2E3FA 1AHOA 1SN1A 3FZKA 1SEGA 4FSVA 3IUCA 1BRZA 1L4VA 1KAYA 1WMTA 1NGHA 2KJAA 3AY9A 3ATVA 3CW4A 5BPMA 1NGIA 3C7NB 1SN4A 3FZMA 5AQZA 1NGAA 3FZHA 4H5RA 1FH3A 3QI7A 1DJTA 3LDQA 4H5TA 3L4IA 4H5NA 5EXWA 2MBKA 2YIPA 5AQFA 5AQSA 1PX9A 1XRSB 2B68A 4GNIA 4CQKA 1BMRA 5FPMA 4FL9A 1WWNA 2LI7A 3LDOA 2QWMA 2YC1C 4IO8A 5AQIA 5AQTA 3FZFA 1GPSA 3KOXA 2QXLA 1BA1A 5F0XA 3D2FB 2E3GA 2B3CA 5AQKA 1BK8A 3JXUA 1WT7A 3GDQA 3KOWA 2D56A 3GKUA 5BN9A 1QQNA 5AQUA 2VY6A 1LQHA 1OZZA 1QQMA 2QWPA 2LJ7A 2E2FA 2NY9X 2QWRA 2SN3A 2QWNA 1S3XA 2E88A 2LKBA 5EVZA 3CQXA 1BCGA 1NH5A 1I2UA 3M3ZA 1NGGA 1P00A 2LJMA 2LN8A 5AQMA 5AQGA 5KK4A 5AR0A 5F1XA 4V1DC 1KV0A 1N4NA 3L56A 2N2QA 1ZVEA 3C7NA 5FPNA 2KHOA 1CN2A 4HE7A 1KAZA 2BRZA 2MN5A 3KVGA 1NGFA 3FE1A 2M8BB 3QFPA 4KBOA 1LQIA 4UJ0A 2KBJA 1I6FA 5AQHA 1ZUTA 1PE4A 1UGLA 2E0HA 2NY8X 3A8YA 1NRBA 1DKGD 1BA0A 2BUPA 1JKZA 5AQOA 1LQQA 1K8BA 3QMLA 5AQRA 3KP1A 1ZYWA 3L6QA 5AQJA 5BPNA 5AQLA 3D2FA 5AQXA 2N2RA 1I2VA 5EX5A 2E8AA 4AB0A 2LY6A 5AQYA 1BUPA 1MYNA 4HWIA 1NGJA 1NE5A 4UAFE 2K35A 1ICAA 1HX1A 1POIA 1T7EA
chains in the Genus database with same CATH topology
2KYQA 3E7UX 2LR3A 4KYPA 5CY0A 4AAZA 1T7BA 1T0ZA 1B7DA 2KBKA 1VNAA 2I61A 2MZ0A 1SNBA 1C56A 1JZAA 1I6GA 2ASCA 1JXCA 1T7AA 4HHFA 2N69A 1P0AA 2LY5A 3PSMA 1CHZA 2ATBA 3E7RL 1C55A 1JZBA 1PTXA 1NPIA 1GPTA 2GL1A 2YEOA 2KBHA 1VNBA 1ZFUA 1T1TA 1OMYA 1ZU3A 2N66A 1B3CA 1ZYVA 1DQ7A 1NRAA 1TI5A 2YBRC 2KSKA 2LT8A 1MR4A 2A7TA 1ZVGA 2KPYA 1AYJA 2KGQA 4AEIA 2E3FA 1AHOA 1SN1A 1SEGA 1BRZA 1L4VA 1WMTA 2KJAA 1SN4A 1FH3A 1DJTA 4CQKA 1PX9A 2B68A 1BMRA 1WWNA 2LI7A 2YC1C 1GPSA 2E3GA 2B3CA 1BK8A 1WT7A 1LQHA 1OZZA 2LJ7A 2NY9X 2SN3A 2LKBA 1BCGA 1NH5A 1I2UA 1P00A 2LJMA 5KK4A 4V1DC 1KV0A 2N2QA 1ZVEA 1CN2A 4HE7A 2BRZA 4UJ0A 2M8BB 1LQIA 2KBJA 1I6FA 1ZUTA 1PE4A 2E0HA 2NY8X 1NRBA 1JKZA 1LQQA 1ZYWA 2N2RA 1I2VA 4AB0A 2LY6A 1MYNA 1NE5A 1ICAA 1N4NA 1T7EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KYQ A;  3E7U X;  2LR3 A;  4KYP A;  5CY0 A;  4AAZ A;  1T7B A;  1T0Z A;  1B7D A;  2KBK A;  1VNA A;  2I61 A;  2MZ0 A;  1SNB A;  1C56 A;  1JZA A;  1I6G A;  2ASC A;  1JXC A;  1T7A A;  4HHF A;  2N69 A;  1P0A A;  2LY5 A;  3PSM A;  1CHZ A;  2ATB A;  3E7R L;  1C55 A;  1JZB A;  1PTX A;  1NPI A;  1GPT A;  2GL1 A;  2YEO A;  2KBH A;  1VNB A;  1ZFU A;  1T1T A;  1OMY A;  1ZU3 A;  2N66 A;  1B3C A;  1ZYV A;  1DQ7 A;  1NRA A;  1TI5 A;  2YBR C;  2KSK A;  2LT8 A;  1MR4 A;  2A7T A;  1ZVG A;  2KPY A;  1AYJ A;  2KGQ A;  4AEI A;  2E3F A;  1AHO A;  1SN1 A;  1SEG A;  1BRZ A;  1L4V A;  1WMT A;  2KJA A;  1SN4 A;  1FH3 A;  1DJT A;  4CQK A;  1PX9 A;  2B68 A;  1BMR A;  1WWN A;  2LI7 A;  2YC1 C;  1GPS A;  2E3G A;  2B3C A;  1BK8 A;  1WT7 A;  1LQH A;  1OZZ A;  2LJ7 A;  2NY9 X;  2SN3 A;  2LKB A;  1BCG A;  1NH5 A;  1I2U A;  1P00 A;  2LJM A;  5KK4 A;  4V1D C;  1KV0 A;  2N2Q A;  1ZVE A;  1CN2 A;  4HE7 A;  2BRZ A;  4UJ0 A;  2M8B B;  1LQI A;  2KBJ A;  1I6F A;  1ZUT A;  1PE4 A;  2E0H A;  2NY8 X;  1NRB A;  1JKZ A;  1LQQ A;  1ZYW A;  2N2R A;  1I2V A;  4AB0 A;  2LY6 A;  1MYN A;  1NE5 A;  1ICA A;  1N4N A;  1T7E A; 
#chains in the Genus database with same CATH topology
 2GMO A;  1NGD A;  3D2E B;  4H5W A;  3R2V A;  3KC6 A;  3LDP A;  2KYQ A;  4UAD E;  3E7U X;  3KOY A;  1NGE A;  2LR3 A;  3HSC A;  4KYP A;  5CY0 A;  4AAZ A;  1T7B A;  2G2K A;  2YIL A;  1T0Z A;  3KOZ A;  5F2R A;  3SF4 D;  1B7D A;  3KP0 A;  5FPE A;  5AQV A;  1KAX A;  3GL1 A;  2KBK A;  3BK3 C;  2QWL A;  1VNA A;  2I61 A;  2MZ0 A;  2YIO A;  1SNB A;  1C56 A;  5AQP A;  2JDQ D;  5BN8 A;  3ATU A;  1JZA A;  1I6G A;  2ASC A;  2V7Z A;  3KHW A;  1JXC A;  5AQW A;  1T7A A;  4HHF A;  2N69 A;  1P0A A;  2QWQ A;  4UAE F;  2LY5 A;  3PSM A;  1NGB A;  1CHZ A;  5AQQ A;  5EY4 A;  2ATB A;  1QQO A;  3E7R L;  1C55 A;  1JZB A;  3LDL A;  1PTX A;  1NPI A;  3I33 A;  2GL1 A;  2YEO A;  1GPT A;  5AQN A;  1HJO A;  1ATR A;  2KBH A;  1VNB A;  1ZFU A;  1T1T A;  1OMY A;  1ZU3 A;  1NGC A;  3D2E A;  3QFU A;  2N66 A;  1B3C A;  1ZYV A;  1DQ7 A;  1NRA A;  1HPM A;  1ATS A;  1TI5 A;  2YBR C;  3LDN A;  2KSK A;  5FPD A;  1YUW A;  2LT8 A;  2QWO A;  4H5V A;  3FZL A;  1MR4 A;  2A7T A;  5BPL A;  1ZVG A;  2KPY A;  2QW9 A;  1AYJ A;  2KGQ A;  4AEI A;  2E3F A;  1AHO A;  1SN1 A;  3FZK A;  1SEG A;  4FSV A;  3IUC A;  1BRZ A;  1L4V A;  1KAY A;  1WMT A;  1NGH A;  2KJA A;  3AY9 A;  3ATV A;  3CW4 A;  5BPM A;  1NGI A;  3C7N B;  1SN4 A;  3FZM A;  5AQZ A;  1NGA A;  3FZH A;  4H5R A;  1FH3 A;  3QI7 A;  1DJT A;  3LDQ A;  4H5T A;  3L4I A;  4H5N A;  5EXW A;  2MBK A;  2YIP A;  5AQF A;  5AQS A;  1PX9 A;  1XRS B;  2B68 A;  4GNI A;  4CQK A;  1BMR A;  5FPM A;  4FL9 A;  1WWN A;  2LI7 A;  3LDO A;  2QWM A;  2YC1 C;  4IO8 A;  5AQI A;  5AQT A;  3FZF A;  1GPS A;  3KOX A;  2QXL A;  1BA1 A;  5F0X A;  3D2F B;  2E3G A;  2B3C A;  5AQK A;  1BK8 A;  3JXU A;  1WT7 A;  3GDQ A;  3KOW A;  2D56 A;  3GKU A;  5BN9 A;  1QQN A;  5AQU A;  2VY6 A;  1LQH A;  1OZZ A;  1QQM A;  2QWP A;  2LJ7 A;  2E2F A;  2NY9 X;  2QWR A;  2SN3 A;  2QWN A;  1S3X A;  2E88 A;  2LKB A;  5EVZ A;  3CQX A;  1BCG A;  1NH5 A;  1I2U A;  3M3Z A;  1NGG A;  1P00 A;  2LJM A;  2LN8 A;  5AQM A;  5AQG A;  5KK4 A;  5AR0 A;  5F1X A;  4V1D C;  1KV0 A;  1N4N A;  3L56 A;  2N2Q A;  1ZVE A;  3C7N A;  5FPN A;  2KHO A;  1CN2 A;  4HE7 A;  1KAZ A;  2BRZ A;  2MN5 A;  3KVG A;  1NGF A;  3FE1 A;  2M8B B;  3QFP A;  4KBO A;  1LQI A;  4UJ0 A;  2KBJ A;  1I6F A;  5AQH A;  1ZUT A;  1PE4 A;  1UGL A;  2E0H A;  2NY8 X;  3A8Y A;  1NRB A;  1DKG D;  1BA0 A;  2BUP A;  1JKZ A;  5AQO A;  1LQQ A;  1K8B A;  3QML A;  5AQR A;  3KP1 A;  1ZYW A;  3L6Q A;  5AQJ A;  5BPN A;  5AQL A;  3D2F A;  5AQX A;  2N2R A;  1I2V A;  5EX5 A;  2E8A A;  4AB0 A;  2LY6 A;  5AQY A;  1BUP A;  1MYN A;  4HWI A;  1NGJ A;  1NE5 A;  4UAF E;  2K35 A;  1ICA A;  1HX1 A;  1POI A;  1T7E A; 
#chains in the Genus database with same CATH homology
 2KYQ A;  3E7U X;  2LR3 A;  4KYP A;  5CY0 A;  4AAZ A;  1T7B A;  1T0Z A;  1B7D A;  2KBK A;  1VNA A;  2I61 A;  2MZ0 A;  1SNB A;  1C56 A;  1JZA A;  1I6G A;  2ASC A;  1JXC A;  1T7A A;  4HHF A;  2N69 A;  1P0A A;  2LY5 A;  3PSM A;  1CHZ A;  2ATB A;  3E7R L;  1C55 A;  1JZB A;  1PTX A;  1NPI A;  1GPT A;  2GL1 A;  2YEO A;  2KBH A;  1VNB A;  1ZFU A;  1T1T A;  1OMY A;  1ZU3 A;  2N66 A;  1B3C A;  1ZYV A;  1DQ7 A;  1NRA A;  1TI5 A;  2YBR C;  2KSK A;  2LT8 A;  1MR4 A;  2A7T A;  1ZVG A;  2KPY A;  1AYJ A;  2KGQ A;  4AEI A;  2E3F A;  1AHO A;  1SN1 A;  1SEG A;  1BRZ A;  1L4V A;  1WMT A;  2KJA A;  1SN4 A;  1FH3 A;  1DJT A;  4CQK A;  1PX9 A;  2B68 A;  1BMR A;  1WWN A;  2LI7 A;  2YC1 C;  1GPS A;  2E3G A;  2B3C A;  1BK8 A;  1WT7 A;  1LQH A;  1OZZ A;  2LJ7 A;  2NY9 X;  2SN3 A;  2LKB A;  1BCG A;  1NH5 A;  1I2U A;  1P00 A;  2LJM A;  5KK4 A;  4V1D C;  1KV0 A;  2N2Q A;  1ZVE A;  1CN2 A;  4HE7 A;  2BRZ A;  4UJ0 A;  2M8B B;  1LQI A;  2KBJ A;  1I6F A;  1ZUT A;  1PE4 A;  2E0H A;  2NY8 X;  1NRB A;  1JKZ A;  1LQQ A;  1ZYW A;  2N2R A;  1I2V A;  4AB0 A;  2LY6 A;  1MYN A;  1NE5 A;  1ICA A;  1N4N A;  1T7E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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