1JKZA

Nmr solution structure of pisum sativum defensin 1 (psd1)
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
46
structure length
46
Chain Sequence
KTCEHLADTYRGVCFTNASCDDHCKNKAHLISGTCHNWKCFCTQNC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antifungal protein
molecule keywords DEFENSE-RELATED PEPTIDE 1
publication title Solution structure of Pisum sativum defensin 1 by high resolution NMR: plant defensins, identical backbone with different mechanisms of action.
pubmed doi rcsb
total genus 7
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2001-07-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00304 Gamma-thionin Gamma-thionin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1jkzA00
1CHZA 1T1TA 1AHOA 1BCGA 2KJAA 1LQHA 1C56A 1B3CA 1JKZA 2ASCA 1T7EA 1NPIA 1ZYVA 1PX9A 1FH3A 2E0HA 2LY5A 1ZUTA 2M8BB 4V1DC 1ZYWA 2B3CA 1GPTA 2NY9X 1JXCA 2BRZA 1T0ZA 2LY6A 2LI7A 1P0AA 2LJMA 1ZVGA 5CY0A 1I2VA 1I2UA 2N66A 1OZZA 1N4NA 1CN2A 2B68A 1VNAA 1BK8A 1DJTA 1SN4A 1WWNA 1SEGA 1T7BA 1GPSA 1P00A 3PSMA 1KV0A 1ICAA 4UJ0A 1NRAA 2KYQA 2LKBA 1TI5A 2KSKA 1BMRA 2KBJA 1L4VA 1NH5A 2E3FA 1JZAA 4KYPA 2SN3A 1NRBA 2E3GA 1PTXA 2YC1C 1LQQA 2NY8X 1B7DA 1T7AA 1DQ7A 2LR3A 2N69A 2GL1A 1AYJA 2N2QA 1WT7A 2N2RA 1SNBA 2KBHA 1I6GA 2ATBA 1ZU3A 2KPYA 5KK4A 2A7TA 1MR4A 1C55A 1SN1A 2LJ7A 2YBRC 2MZ0A 1ZFUA 4HHFA 2I61A 3E7RL 1I6FA 1PE4A 4AEIA 1JZBA 2KGQA 2LT8A 1BRZA 1NE5A 4AAZA 3E7UX 2YEOA 1VNBA 2KBKA 4AB0A 1WMTA 4CQKA 1ZVEA 1MYNA 1LQIA 4HE7A 1OMYA
chains in the Genus database with same CATH superfamily
1CHZA 1T1TA 1AHOA 1BCGA 4H5TA 2KJAA 1HJOA 2YILA 1LQHA 4KBOA 1C56A 4H5NA 4H5WA 5EY4A 4HWIA 5AQVA 3GL1A 5AQHA 1B3CA 1JKZA 5BN8A 5AQPA 3L56A 2ASCA 1NGIA 3D2EA 1T7EA 1NPIA 1ZYVA 1PX9A 2E88A 1NGGA 2QWLA 2E0HA 5EXWA 1FH3A 2LY5A 1ZUTA 2M8BB 2KHOA 4V1DC 1ZYWA 1NGJA 2B3CA 1GPTA 1YUWA 4UADE 3FZLA 1NGHA 5AQOA 5AQTA 1QQOA 1JXCA 2NY9X 1S3XA 2BRZA 1BA1A 1T0ZA 4FL9A 2LY6A 2LI7A 2VY6A 1P0AA 3C7NB 5AQRA 1ZVGA 2E8AA 2LJMA 3LDLA 4UAEF 5AQQA 5CY0A 3KOXA 3L4IA 1I2VA 1I2UA 1ATRA 3CW4A 3JXUA 5AQUA 3KOWA 1HX1A 2N66A 3LDPA 4FSVA 1OZZA 1N4NA 3KP0A 5AQGA 2QWMA 2G2KA 2QXLA 5FPNA 5EX5A 1CN2A 2B68A 5AQYA 1VNAA 3KOZA 5BPLA 3CQXA 5BPNA 5AQNA 5FPEA 1BK8A 1NGBA 3QI7A 2MN5A 1NGDA 1DJTA 2D56A 2LN8A 3QFUA 1SN4A 1WWNA 3C7NA 5AQIA 2QW9A 3D2FB 1QQNA 1SEGA 3R2VA 1DKGD 1T7BA 1GPSA 1P00A 3SF4D 3PSMA 3IUCA 3GDQA 1KV0A 3FZHA 1ICAA 3FE1A 4UJ0A 1NRAA 2KYQA 2LKBA 5AQLA 1TI5A 1K8BA 2KSKA 1BMRA 2KBJA 1POIA 5F1XA 1L4VA 1NH5A 2E3FA 4H5VA 1JZAA 2JDQD 3FZFA 4KYPA 2SN3A 1NRBA 3KP1A 4UAFE 5AQFA 3ATUA 3D2FA 2E3GA 2BUPA 1BUPA 1PTXA 2YC1C 4IO8A 1LQQA 2NY8X 1B7DA 1T7AA 1DQ7A 2LR3A 5BPMA 5FPDA 3ATVA 2N69A 2GL1A 2QWOA 1AYJA 2N2QA 2QWNA 1WT7A 5FPMA 3KC6A 5F2RA 2GMOA 2N2RA 3LDNA 3KVGA 3QFPA 2QWPA 5AQMA 2QWQA 3QMLA 1SNBA 2KBHA 1KAZA 5AQZA 3FZMA 3HSCA 1I6GA 3L6QA 2ATBA 5EVZA 2QWRA 1ZU3A 2KPYA 3FZKA 5KK4A 1NGFA 2YIPA 2A7TA 1MR4A 1C55A 3LDOA 4H5RA 1QQMA 1SN1A 5AQWA 2LJ7A 3KHWA 3A8YA 2YIOA 3BK3C 2YBRC 1NGAA 1ZFUA 2MZ0A 4HHFA 2I61A 3KOYA 2E2FA 3E7RL 1I6FA 1PE4A 5AQSA 1JZBA 1KAXA 2KGQA 4AEIA 2LT8A 1BRZA 1NE5A 2K35A 3I33A 5AQJA 3AY9A 4AAZA 5AQKA 3E7UX 3LDQA 2YEOA 1VNBA 2KBKA 4AB0A 1KAYA 1ATSA 1BA0A 1WMTA 4CQKA 5AQXA 1ZVEA 1XRSB 2V7ZA 1MYNA 1LQIA 3M3ZA 3D2EB 4HE7A 4GNIA 2MBKA 5AR0A 1OMYA 5BN9A 1HPMA 3GKUA 5F0XA 1UGLA 1NGEA 1NGCA
chains in the Genus database with same CATH topology
1CHZA 1T1TA 1AHOA 1BCGA 2KJAA 1LQHA 1C56A 1B3CA 1JKZA 2ASCA 1T7EA 1NPIA 1ZYVA 1PX9A 1FH3A 2E0HA 2LY5A 1ZUTA 2M8BB 4V1DC 1ZYWA 2B3CA 1GPTA 2NY9X 1JXCA 2BRZA 1T0ZA 2LY6A 2LI7A 1P0AA 2LJMA 1ZVGA 5CY0A 1I2VA 1I2UA 2N66A 1OZZA 1N4NA 1CN2A 2B68A 1VNAA 1BK8A 1DJTA 1SN4A 1WWNA 1SEGA 1T7BA 1GPSA 1P00A 3PSMA 1KV0A 1ICAA 4UJ0A 1NRAA 2KYQA 2LKBA 1TI5A 2KSKA 1BMRA 2KBJA 1L4VA 1NH5A 2E3FA 1JZAA 4KYPA 2SN3A 1NRBA 2E3GA 1PTXA 2YC1C 1LQQA 2NY8X 1B7DA 1T7AA 1DQ7A 2LR3A 2N69A 2GL1A 1AYJA 2N2QA 1WT7A 2N2RA 1SNBA 2KBHA 1I6GA 2ATBA 1ZU3A 2KPYA 5KK4A 2A7TA 1MR4A 1C55A 1SN1A 2LJ7A 2YBRC 2MZ0A 1ZFUA 4HHFA 2I61A 3E7RL 1I6FA 1PE4A 4AEIA 1JZBA 2KGQA 2LT8A 1BRZA 1NE5A 4AAZA 3E7UX 2YEOA 1VNBA 2KBKA 4AB0A 1WMTA 4CQKA 1ZVEA 1MYNA 1LQIA 4HE7A 1OMYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CHZ A;  1T1T A;  1AHO A;  1BCG A;  2KJA A;  1LQH A;  1C56 A;  1B3C A;  1JKZ A;  2ASC A;  1T7E A;  1NPI A;  1ZYV A;  1PX9 A;  1FH3 A;  2E0H A;  2LY5 A;  1ZUT A;  2M8B B;  4V1D C;  1ZYW A;  2B3C A;  1GPT A;  2NY9 X;  1JXC A;  2BRZ A;  1T0Z A;  2LY6 A;  2LI7 A;  1P0A A;  2LJM A;  1ZVG A;  5CY0 A;  1I2V A;  1I2U A;  2N66 A;  1OZZ A;  1N4N A;  1CN2 A;  2B68 A;  1VNA A;  1BK8 A;  1DJT A;  1SN4 A;  1WWN A;  1SEG A;  1T7B A;  1GPS A;  1P00 A;  3PSM A;  1KV0 A;  1ICA A;  4UJ0 A;  1NRA A;  2KYQ A;  2LKB A;  1TI5 A;  2KSK A;  1BMR A;  2KBJ A;  1L4V A;  1NH5 A;  2E3F A;  1JZA A;  4KYP A;  2SN3 A;  1NRB A;  2E3G A;  1PTX A;  2YC1 C;  1LQQ A;  2NY8 X;  1B7D A;  1T7A A;  1DQ7 A;  2LR3 A;  2N69 A;  2GL1 A;  1AYJ A;  2N2Q A;  1WT7 A;  2N2R A;  1SNB A;  2KBH A;  1I6G A;  2ATB A;  1ZU3 A;  2KPY A;  5KK4 A;  2A7T A;  1MR4 A;  1C55 A;  1SN1 A;  2LJ7 A;  2YBR C;  2MZ0 A;  1ZFU A;  4HHF A;  2I61 A;  3E7R L;  1I6F A;  1PE4 A;  4AEI A;  1JZB A;  2KGQ A;  2LT8 A;  1BRZ A;  1NE5 A;  4AAZ A;  3E7U X;  2YEO A;  1VNB A;  2KBK A;  4AB0 A;  1WMT A;  4CQK A;  1ZVE A;  1MYN A;  1LQI A;  4HE7 A;  1OMY A; 
#chains in the Genus database with same CATH topology
 1CHZ A;  1T1T A;  1AHO A;  1BCG A;  4H5T A;  2KJA A;  1HJO A;  2YIL A;  1LQH A;  4KBO A;  1C56 A;  4H5N A;  4H5W A;  5EY4 A;  4HWI A;  5AQV A;  3GL1 A;  5AQH A;  1B3C A;  1JKZ A;  5BN8 A;  5AQP A;  3L56 A;  2ASC A;  1NGI A;  3D2E A;  1T7E A;  1NPI A;  1ZYV A;  1PX9 A;  2E88 A;  1NGG A;  2QWL A;  2E0H A;  5EXW A;  1FH3 A;  2LY5 A;  1ZUT A;  2M8B B;  2KHO A;  4V1D C;  1ZYW A;  1NGJ A;  2B3C A;  1GPT A;  1YUW A;  4UAD E;  3FZL A;  1NGH A;  5AQO A;  5AQT A;  1QQO A;  1JXC A;  2NY9 X;  1S3X A;  2BRZ A;  1BA1 A;  1T0Z A;  4FL9 A;  2LY6 A;  2LI7 A;  2VY6 A;  1P0A A;  3C7N B;  5AQR A;  1ZVG A;  2E8A A;  2LJM A;  3LDL A;  4UAE F;  5AQQ A;  5CY0 A;  3KOX A;  3L4I A;  1I2V A;  1I2U A;  1ATR A;  3CW4 A;  3JXU A;  5AQU A;  3KOW A;  1HX1 A;  2N66 A;  3LDP A;  4FSV A;  1OZZ A;  1N4N A;  3KP0 A;  5AQG A;  2QWM A;  2G2K A;  2QXL A;  5FPN A;  5EX5 A;  1CN2 A;  2B68 A;  5AQY A;  1VNA A;  3KOZ A;  5BPL A;  3CQX A;  5BPN A;  5AQN A;  5FPE A;  1BK8 A;  1NGB A;  3QI7 A;  2MN5 A;  1NGD A;  1DJT A;  2D56 A;  2LN8 A;  3QFU A;  1SN4 A;  1WWN A;  3C7N A;  5AQI A;  2QW9 A;  3D2F B;  1QQN A;  1SEG A;  3R2V A;  1DKG D;  1T7B A;  1GPS A;  1P00 A;  3SF4 D;  3PSM A;  3IUC A;  3GDQ A;  1KV0 A;  3FZH A;  1ICA A;  3FE1 A;  4UJ0 A;  1NRA A;  2KYQ A;  2LKB A;  5AQL A;  1TI5 A;  1K8B A;  2KSK A;  1BMR A;  2KBJ A;  1POI A;  5F1X A;  1L4V A;  1NH5 A;  2E3F A;  4H5V A;  1JZA A;  2JDQ D;  3FZF A;  4KYP A;  2SN3 A;  1NRB A;  3KP1 A;  4UAF E;  5AQF A;  3ATU A;  3D2F A;  2E3G A;  2BUP A;  1BUP A;  1PTX A;  2YC1 C;  4IO8 A;  1LQQ A;  2NY8 X;  1B7D A;  1T7A A;  1DQ7 A;  2LR3 A;  5BPM A;  5FPD A;  3ATV A;  2N69 A;  2GL1 A;  2QWO A;  1AYJ A;  2N2Q A;  2QWN A;  1WT7 A;  5FPM A;  3KC6 A;  5F2R A;  2GMO A;  2N2R A;  3LDN A;  3KVG A;  3QFP A;  2QWP A;  5AQM A;  2QWQ A;  3QML A;  1SNB A;  2KBH A;  1KAZ A;  5AQZ A;  3FZM A;  3HSC A;  1I6G A;  3L6Q A;  2ATB A;  5EVZ A;  2QWR A;  1ZU3 A;  2KPY A;  3FZK A;  5KK4 A;  1NGF A;  2YIP A;  2A7T A;  1MR4 A;  1C55 A;  3LDO A;  4H5R A;  1QQM A;  1SN1 A;  5AQW A;  2LJ7 A;  3KHW A;  3A8Y A;  2YIO A;  3BK3 C;  2YBR C;  1NGA A;  1ZFU A;  2MZ0 A;  4HHF A;  2I61 A;  3KOY A;  2E2F A;  3E7R L;  1I6F A;  1PE4 A;  5AQS A;  1JZB A;  1KAX A;  2KGQ A;  4AEI A;  2LT8 A;  1BRZ A;  1NE5 A;  2K35 A;  3I33 A;  5AQJ A;  3AY9 A;  4AAZ A;  5AQK A;  3E7U X;  3LDQ A;  2YEO A;  1VNB A;  2KBK A;  4AB0 A;  1KAY A;  1ATS A;  1BA0 A;  1WMT A;  4CQK A;  5AQX A;  1ZVE A;  1XRS B;  2V7Z A;  1MYN A;  1LQI A;  3M3Z A;  3D2E B;  4HE7 A;  4GNI A;  2MBK A;  5AR0 A;  1OMY A;  5BN9 A;  1HPM A;  3GKU A;  5F0X A;  1UGL A;  1NGE A;  1NGC A; 
#chains in the Genus database with same CATH homology
 1CHZ A;  1T1T A;  1AHO A;  1BCG A;  2KJA A;  1LQH A;  1C56 A;  1B3C A;  1JKZ A;  2ASC A;  1T7E A;  1NPI A;  1ZYV A;  1PX9 A;  1FH3 A;  2E0H A;  2LY5 A;  1ZUT A;  2M8B B;  4V1D C;  1ZYW A;  2B3C A;  1GPT A;  2NY9 X;  1JXC A;  2BRZ A;  1T0Z A;  2LY6 A;  2LI7 A;  1P0A A;  2LJM A;  1ZVG A;  5CY0 A;  1I2V A;  1I2U A;  2N66 A;  1OZZ A;  1N4N A;  1CN2 A;  2B68 A;  1VNA A;  1BK8 A;  1DJT A;  1SN4 A;  1WWN A;  1SEG A;  1T7B A;  1GPS A;  1P00 A;  3PSM A;  1KV0 A;  1ICA A;  4UJ0 A;  1NRA A;  2KYQ A;  2LKB A;  1TI5 A;  2KSK A;  1BMR A;  2KBJ A;  1L4V A;  1NH5 A;  2E3F A;  1JZA A;  4KYP A;  2SN3 A;  1NRB A;  2E3G A;  1PTX A;  2YC1 C;  1LQQ A;  2NY8 X;  1B7D A;  1T7A A;  1DQ7 A;  2LR3 A;  2N69 A;  2GL1 A;  1AYJ A;  2N2Q A;  1WT7 A;  2N2R A;  1SNB A;  2KBH A;  1I6G A;  2ATB A;  1ZU3 A;  2KPY A;  5KK4 A;  2A7T A;  1MR4 A;  1C55 A;  1SN1 A;  2LJ7 A;  2YBR C;  2MZ0 A;  1ZFU A;  4HHF A;  2I61 A;  3E7R L;  1I6F A;  1PE4 A;  4AEI A;  1JZB A;  2KGQ A;  2LT8 A;  1BRZ A;  1NE5 A;  4AAZ A;  3E7U X;  2YEO A;  1VNB A;  2KBK A;  4AB0 A;  1WMT A;  4CQK A;  1ZVE A;  1MYN A;  1LQI A;  4HE7 A;  1OMY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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