1UGLA

Solution structure of s8-sp11
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
50
structure length
50
Chain Sequence
NLMKRCTRGFRKLGKCTTLEEEKCKTLYPRGQCTCSDSKMNTHSCDCKSC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Plant protein
molecule keywords S-locus pollen protein
publication title Structure of the Male Determinant Factor for Brassica Self-incompatibility
pubmed doi rcsb
total genus 7
structure length 50
sequence length 50
ec nomenclature
pdb deposition date 2003-06-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.70 Alpha Beta 2-Layer Sandwich Defensin A-like Scorpion toxin-like 1uglA00
1UGLA
chains in the Genus database with same CATH superfamily
1VNBA 1NGAA 3KHWA 1BMRA 3KOWA 3LDQA 5AQVA 2NY8X 1OZZA 1NGJA 1PTXA 3CQXA 5AQYA 5AQJA 3D2FA 5BN9A 3KOXA 1BRZA 2LI7A 2QWRA 1T7AA 4HE7A 1SEGA 5BN8A 3SF4D 3ATVA 1JZAA 2KHOA 2KBJA 5AQZA 5AQOA 1KV0A 2QWNA 3KP1A 2MN5A 5BPLA 2V7ZA 1S3XA 2MBKA 1NGHA 1POIA 5AQIA 1JZBA 3QMLA 1BA1A 5FPEA 1KAYA 1P00A 3L4IA 1T7EA 3A8YA 5AQKA 5FPDA 1LQIA 1C55A 1LQQA 1UGLA 2B3CA 3BK3C 4H5NA 1BK8A 1DJTA 1P0AA 1NGCA 1HJOA 1OMYA 2E0HA 2E2FA 2GMOA 2YIOA 1SNBA 1WT7A 1ATRA 2LJ7A 4AB0A 3M3ZA 4GNIA 5F2RA 1ZYVA 1LQHA 3L56A 1NRAA 1BUPA 2ATBA 2B68A 2KGQA 2M8BB 1NGBA 2N66A 2QWLA 2SN3A 2YIPA 3E7RL 3QFPA 5AQNA 2KPYA 2LY5A 1T7BA 5BPMA 1I2VA 2LKBA 2YBRC 1MR4A 3GL1A 1JXCA 3R2VA 1QQNA 5AQHA 2E3FA 3KOZA 5AQRA 5F1XA 1T1TA 3AY9A 2QXLA 4UJ0A 1PX9A 3C7NB 1ZUTA 1TI5A 3QI7A 4V1DC 1I2UA 3FE1A 1NGGA 2YILA 5AQMA 1DQ7A 2KJAA 1NGFA 2KBKA 5KK4A 5AQTA 5F0XA 5AQQA 1PE4A 2LT8A 3IUCA 3LDPA 1NGEA 1ZFUA 5FPNA 4AAZA 1C56A 2MZ0A 1KAZA 5AR0A 3GDQA 5AQFA 4UAFE 3FZMA 5AQGA 5CY0A 1YUWA 2ASCA 5EVZA 1K8BA 1ZYWA 5EX5A 5FPMA 1XRSB 2LN8A 2G2KA 5AQUA 1T0ZA 3C7NA 3I33A 2BUPA 5AQLA 5EY4A 1B7DA 2K35A 3LDNA 1NE5A 1QQOA 1CHZA 1NRBA 1SN1A 1FH3A 1HX1A 2GL1A 1SN4A 1BCGA 4UADE 4KYPA 2JDQD 3L6QA 3D2EB 3LDOA 4UAEF 5EXWA 1QQMA 4H5TA 1AYJA 2D56A 5AQXA 1ZVEA 2YC1C 1CN2A 1AHOA 2A7TA 4KBOA 5AQPA 3CW4A 1VNAA 2QWQA 2KBHA 2NY9X 1HPMA 3KP0A 1NH5A 2QWPA 3HSCA 4AEIA 3FZLA 1I6FA 2E8AA 2N69A 4H5RA 2E88A 2KSKA 2QWMA 2KYQA 4H5VA 1ATSA 3KC6A 1MYNA 3FZKA 2N2QA 1KAXA 2LY6A 5AQWA 4FL9A 5BPNA 1JKZA 1NGDA 3KOYA 1L4VA 4FSVA 1ZU3A 1ZVGA 3KVGA 2QW9A 3D2FB 3D2EA 4IO8A 2LJMA 4CQKA 1GPSA 4HWIA 3FZFA 1ICAA 3QFUA 2YEOA 2N2RA 5AQSA 3LDLA 1N4NA 2E3GA 2BRZA 3ATUA 2VY6A 3GKUA 1B3CA 1I6GA 2LR3A 1NPIA 3E7UX 3JXUA 1GPTA 1DKGD 1WMTA 2I61A 1WWNA 3FZHA 4HHFA 1NGIA 1BA0A 3PSMA 4H5WA 2QWOA
chains in the Genus database with same CATH topology
1UGLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UGL A; 
#chains in the Genus database with same CATH topology
 1VNB A;  1NGA A;  3KHW A;  1BMR A;  3KOW A;  3LDQ A;  5AQV A;  2NY8 X;  1OZZ A;  1NGJ A;  1PTX A;  3CQX A;  5AQY A;  5AQJ A;  3D2F A;  5BN9 A;  3KOX A;  1BRZ A;  2LI7 A;  2QWR A;  1T7A A;  4HE7 A;  1SEG A;  5BN8 A;  3SF4 D;  3ATV A;  1JZA A;  2KHO A;  2KBJ A;  5AQZ A;  5AQO A;  1KV0 A;  2QWN A;  3KP1 A;  2MN5 A;  5BPL A;  2V7Z A;  1S3X A;  2MBK A;  1NGH A;  1POI A;  5AQI A;  1JZB A;  3QML A;  1BA1 A;  5FPE A;  1KAY A;  1P00 A;  3L4I A;  1T7E A;  3A8Y A;  5AQK A;  5FPD A;  1LQI A;  1C55 A;  1LQQ A;  1UGL A;  2B3C A;  3BK3 C;  4H5N A;  1BK8 A;  1DJT A;  1P0A A;  1NGC A;  1HJO A;  1OMY A;  2E0H A;  2E2F A;  2GMO A;  2YIO A;  1SNB A;  1WT7 A;  1ATR A;  2LJ7 A;  4AB0 A;  3M3Z A;  4GNI A;  5F2R A;  1ZYV A;  1LQH A;  3L56 A;  1NRA A;  1BUP A;  2ATB A;  2B68 A;  2KGQ A;  2M8B B;  1NGB A;  2N66 A;  2QWL A;  2SN3 A;  2YIP A;  3E7R L;  3QFP A;  5AQN A;  2KPY A;  2LY5 A;  1T7B A;  5BPM A;  1I2V A;  2LKB A;  2YBR C;  1MR4 A;  3GL1 A;  1JXC A;  3R2V A;  1QQN A;  5AQH A;  2E3F A;  3KOZ A;  5AQR A;  5F1X A;  1T1T A;  3AY9 A;  2QXL A;  4UJ0 A;  1PX9 A;  3C7N B;  1ZUT A;  1TI5 A;  3QI7 A;  4V1D C;  1I2U A;  3FE1 A;  1NGG A;  2YIL A;  5AQM A;  1DQ7 A;  2KJA A;  1NGF A;  2KBK A;  5KK4 A;  5AQT A;  5F0X A;  5AQQ A;  1PE4 A;  2LT8 A;  3IUC A;  3LDP A;  1NGE A;  1ZFU A;  5FPN A;  4AAZ A;  1C56 A;  2MZ0 A;  1KAZ A;  5AR0 A;  3GDQ A;  5AQF A;  4UAF E;  3FZM A;  5AQG A;  5CY0 A;  1YUW A;  2ASC A;  5EVZ A;  1K8B A;  1ZYW A;  5EX5 A;  5FPM A;  1XRS B;  2LN8 A;  2G2K A;  5AQU A;  1T0Z A;  3C7N A;  3I33 A;  2BUP A;  5AQL A;  5EY4 A;  1B7D A;  2K35 A;  3LDN A;  1NE5 A;  1QQO A;  1CHZ A;  1NRB A;  1SN1 A;  1FH3 A;  1HX1 A;  2GL1 A;  1SN4 A;  1BCG A;  4UAD E;  4KYP A;  2JDQ D;  3L6Q A;  3D2E B;  3LDO A;  4UAE F;  5EXW A;  1QQM A;  4H5T A;  1AYJ A;  2D56 A;  5AQX A;  1ZVE A;  2YC1 C;  1CN2 A;  1AHO A;  2A7T A;  4KBO A;  5AQP A;  3CW4 A;  1VNA A;  2QWQ A;  2KBH A;  2NY9 X;  1HPM A;  3KP0 A;  1NH5 A;  2QWP A;  3HSC A;  4AEI A;  3FZL A;  1I6F A;  2E8A A;  2N69 A;  4H5R A;  2E88 A;  2KSK A;  2QWM A;  2KYQ A;  4H5V A;  1ATS A;  3KC6 A;  1MYN A;  3FZK A;  2N2Q A;  1KAX A;  2LY6 A;  5AQW A;  4FL9 A;  5BPN A;  1JKZ A;  1NGD A;  3KOY A;  1L4V A;  4FSV A;  1ZU3 A;  1ZVG A;  3KVG A;  2QW9 A;  3D2F B;  3D2E A;  4IO8 A;  2LJM A;  4CQK A;  1GPS A;  4HWI A;  3FZF A;  1ICA A;  3QFU A;  2YEO A;  2N2R A;  5AQS A;  3LDL A;  1N4N A;  2E3G A;  2BRZ A;  3ATU A;  2VY6 A;  3GKU A;  1B3C A;  1I6G A;  2LR3 A;  1NPI A;  3E7U X;  3JXU A;  1GPT A;  1DKG D;  1WMT A;  2I61 A;  1WWN A;  3FZH A;  4HHF A;  1NGI A;  1BA0 A;  3PSM A;  4H5W A;  2QWO A; 
#chains in the Genus database with same CATH homology
 1UGL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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