3R2VA

Crystal structure of polymerase basic protein 2 e538-r753 from influenza a virus a/yokohama/2017/03 h3n2
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
198
structure length
192
Chain Sequence
GPESVLVNTYQWIIRNWEAVKIQWSQNPAMLYNKMEFEPFQSLVPKAIRSQYSGFVRTLFQQMRDVLGTFDTTQIIKLLPFAAAPPKQSRMQFSSLTVNVRGSGMRILVRGNSPVFNYNKTTKRLTILGKDAGTLIEDGVESAVLRGFLIIGKEDRRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
source organism Influenza a virus
publication title The Protein Maker: an automated system for high-throughput parallel purification.
pubmed doi rcsb
molecule keywords PB2 C-terminal subunit
total genus 55
structure length 192
sequence length 198
ec nomenclature
pdb deposition date 2011-03-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00604 Flu_PB2 Influenza RNA-dependent RNA polymerase subunit PB2
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.90 Alpha Beta 2-Layer Sandwich Defensin A-like Defensin A-like 3r2vA02
2VY6A 3L56A 4UAFE 3CW4A 4UAEF 3KC6A 3R2VA 2GMOA 4UADE 3KHWA 2JDQD
chains in the Genus database with same CATH superfamily
1WWNA 2BRZA 3LDLA 5EXWA 3KVGA 1I6FA 2KJAA 1KAZA 3L4IA 2QWRA 4IO8A 5EVZA 1PTXA 3ATUA 1P00A 4FSVA 1NGGA 3C7NA 3IUCA 5FPEA 1ZVEA 2NY8X 5AQTA 5BPMA 1P0AA 5AQLA 4KBOA 1DKGD 3KOXA 2NY9X 5AQGA 5AQZA 3KOZA 4FL9A 3D2EB 5FPDA 5KK4A 5AQQA 1PX9A 4UADE 3FE1A 5BN9A 2YILA 1T7EA 2VY6A 1T1TA 1WMTA 2BUPA 2G2KA 3D2EA 1FH3A 2LJMA 2KPYA 2QXLA 3LDNA 2KYQA 3D2FB 3FZLA 2LI7A 1B7DA 1NRAA 2D56A 1I2UA 3QI7A 1SEGA 1AYJA 3LDQA 1OMYA 5AQWA 3E7RL 1SN1A 3GDQA 1AHOA 3SF4D 2E88A 1MYNA 5BN8A 2YC1C 2KSKA 5F1XA 1NGAA 1SN4A 2M8BB 1MR4A 1NGIA 2N69A 2QWQA 1CN2A 2MZ0A 2MN5A 1T7AA 2YIPA 1SNBA 1POIA 1NGJA 1GPTA 5AQXA 3JXUA 3M3ZA 3KHWA 4V1DC 5AQSA 1NGHA 3CQXA 5CY0A 2I61A 2KGQA 3L56A 3GL1A 2QWLA 1NH5A 4HHFA 5AQYA 2YIOA 2LJ7A 2QWMA 2A7TA 4H5VA 4UAEF 5EX5A 3L6QA 2QWPA 5FPMA 1BRZA 5AQVA 1DJTA 1N4NA 1ZYWA 5F0XA 4H5RA 2KBHA 1JZAA 1VNAA 4GNIA 3LDPA 2GL1A 4H5WA 1CHZA 4KYPA 2N66A 1C56A 1QQOA 1BA0A 1ZYVA 2GMOA 2LKBA 2LN8A 3BK3C 3FZKA 2N2RA 2LY6A 5FPNA 5BPNA 1BK8A 1GPSA 5AQIA 2QWOA 3D2FA 3HSCA 5AQNA 3E7UX 1B3CA 1S3XA 3ATVA 1NE5A 2E3GA 2LR3A 2MBKA 1HPMA 2V7ZA 1UGLA 2K35A 4H5TA 1WT7A 5AR0A 4AEIA 3I33A 5AQJA 2SN3A 5EY4A 2ASCA 3KC6A 1ATRA 5AQPA 3KOWA 2E2FA 1NRBA 2E8AA 3KP1A 3FZMA 1ZFUA 3FZFA 2LY5A 1T7BA 2B68A 3C7NB 3GKUA 5F2RA 2E3FA 4UJ0A 5BPLA 2JDQD 1OZZA 1JKZA 1XRSB 3QMLA 2YBRC 3FZHA 1I2VA 3KP0A 3CW4A 3QFPA 1KAXA 1NGBA 1DQ7A 4AB0A 3LDOA 1HX1A 1QQNA 4HWIA 1BA1A 1LQQA 2ATBA 2KBJA 1ZUTA 3QFUA 5AQOA 5AQRA 1ZU3A 5AQKA 5AQHA 2YEOA 3R2VA 2KBKA 1HJOA 1JXCA 2LT8A 2E0HA 1NGDA 1C55A 1NPIA 2N2QA 3A8YA 1PE4A 1BUPA 2B3CA 4UAFE 2QWNA 1JZBA 3KOYA 1NGEA 4H5NA 1KAYA 1T0ZA 3PSMA 1BMRA 4AAZA 3AY9A 1I6GA 1K8BA 1NGFA 1ICAA 1ATSA 1LQHA 4CQKA 1L4VA 1YUWA 5AQMA 1NGCA 4HE7A 1BCGA 5AQUA 1VNBA 2QW9A 1TI5A 2KHOA 1QQMA 5AQFA 1ZVGA 1LQIA 1KV0A
chains in the Genus database with same CATH topology
3LDLA 5EXWA 3KVGA 5AQRA 1KAZA 3L4IA 2QWRA 4IO8A 5EVZA 3ATUA 4FSVA 1NGGA 3C7NA 3IUCA 5FPEA 5AQTA 5BPMA 5AQLA 4KBOA 1DKGD 5AQGA 5AQZA 4FL9A 3D2EB 5FPDA 5AQQA 4UADE 3FE1A 5BN9A 2YILA 2VY6A 2BUPA 3D2EA 3LDNA 3D2FB 3FZLA 2D56A 3LDQA 5AQWA 3GDQA 3SF4D 2E88A 5BN8A 5F1XA 1NGAA 1NGIA 2QWQA 2MN5A 2YIPA 1POIA 1NGJA 5AQXA 3JXUA 3M3ZA 3KHWA 5AQSA 1NGHA 3CQXA 3L56A 3GL1A 2QWLA 5AQYA 5EX5A 2YIOA 4H5VA 2QWMA 4UAEF 5FPMA 3L6QA 2QWPA 5AQVA 5F0XA 4H5RA 4GNIA 3LDPA 4H5WA 1QQOA 2GMOA 1BA0A 2LN8A 3BK3C 3FZKA 5FPNA 5BPNA 5AQIA 2QWOA 3D2FA 3HSCA 5AQNA 1S3XA 3ATVA 2MBKA 1HPMA 2V7ZA 2K35A 4H5TA 5AR0A 3I33A 5AQJA 5EY4A 3KC6A 1ATRA 5AQPA 2E2FA 2E8AA 3FZMA 3FZFA 3C7NB 5F2RA 5BPLA 2JDQD 3QMLA 3FZHA 3CW4A 3QFPA 1KAXA 1NGBA 3LDOA 1HX1A 1QQNA 4HWIA 1BA1A 3QFUA 5AQOA 5AQKA 5AQHA 3R2VA 1HJOA 1NGDA 3A8YA 1BUPA 4UAFE 2QWNA 1NGEA 4H5NA 1KAYA 3AY9A 1NGFA 1ATSA 1YUWA 5AQMA 1NGCA 5AQUA 3QI7A 2KHOA 1QQMA 5AQFA 2QXLA 2QW9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VY6 A;  3L56 A;  4UAF E;  3CW4 A;  4UAE F;  3KC6 A;  3R2V A;  2GMO A;  4UAD E;  3KHW A;  2JDQ D; 
#chains in the Genus database with same CATH topology
 1WWN A;  2BRZ A;  3LDL A;  5EXW A;  3KVG A;  1I6F A;  2KJA A;  1KAZ A;  3L4I A;  2QWR A;  4IO8 A;  5EVZ A;  1PTX A;  3ATU A;  1P00 A;  4FSV A;  1NGG A;  3C7N A;  3IUC A;  5FPE A;  1ZVE A;  2NY8 X;  5AQT A;  5BPM A;  1P0A A;  5AQL A;  4KBO A;  1DKG D;  3KOX A;  2NY9 X;  5AQG A;  5AQZ A;  3KOZ A;  4FL9 A;  3D2E B;  5FPD A;  5KK4 A;  5AQQ A;  1PX9 A;  4UAD E;  3FE1 A;  5BN9 A;  2YIL A;  1T7E A;  2VY6 A;  1T1T A;  1WMT A;  2BUP A;  2G2K A;  3D2E A;  1FH3 A;  2LJM A;  2KPY A;  2QXL A;  3LDN A;  2KYQ A;  3D2F B;  3FZL A;  2LI7 A;  1B7D A;  1NRA A;  2D56 A;  1I2U A;  3QI7 A;  1SEG A;  1AYJ A;  3LDQ A;  1OMY A;  5AQW A;  3E7R L;  1SN1 A;  3GDQ A;  1AHO A;  3SF4 D;  2E88 A;  1MYN A;  5BN8 A;  2YC1 C;  2KSK A;  5F1X A;  1NGA A;  1SN4 A;  2M8B B;  1MR4 A;  1NGI A;  2N69 A;  2QWQ A;  1CN2 A;  2MZ0 A;  2MN5 A;  1T7A A;  2YIP A;  1SNB A;  1POI A;  1NGJ A;  1GPT A;  5AQX A;  3JXU A;  3M3Z A;  3KHW A;  4V1D C;  5AQS A;  1NGH A;  3CQX A;  5CY0 A;  2I61 A;  2KGQ A;  3L56 A;  3GL1 A;  2QWL A;  1NH5 A;  4HHF A;  5AQY A;  2YIO A;  2LJ7 A;  2QWM A;  2A7T A;  4H5V A;  4UAE F;  5EX5 A;  3L6Q A;  2QWP A;  5FPM A;  1BRZ A;  5AQV A;  1DJT A;  1N4N A;  1ZYW A;  5F0X A;  4H5R A;  2KBH A;  1JZA A;  1VNA A;  4GNI A;  3LDP A;  2GL1 A;  4H5W A;  1CHZ A;  4KYP A;  2N66 A;  1C56 A;  1QQO A;  1BA0 A;  1ZYV A;  2GMO A;  2LKB A;  2LN8 A;  3BK3 C;  3FZK A;  2N2R A;  2LY6 A;  5FPN A;  5BPN A;  1BK8 A;  1GPS A;  5AQI A;  2QWO A;  3D2F A;  3HSC A;  5AQN A;  3E7U X;  1B3C A;  1S3X A;  3ATV A;  1NE5 A;  2E3G A;  2LR3 A;  2MBK A;  1HPM A;  2V7Z A;  1UGL A;  2K35 A;  4H5T A;  1WT7 A;  5AR0 A;  4AEI A;  3I33 A;  5AQJ A;  2SN3 A;  5EY4 A;  2ASC A;  3KC6 A;  1ATR A;  5AQP A;  3KOW A;  2E2F A;  1NRB A;  2E8A A;  3KP1 A;  3FZM A;  1ZFU A;  3FZF A;  2LY5 A;  1T7B A;  2B68 A;  3C7N B;  3GKU A;  5F2R A;  2E3F A;  4UJ0 A;  5BPL A;  2JDQ D;  1OZZ A;  1JKZ A;  1XRS B;  3QML A;  2YBR C;  3FZH A;  1I2V A;  3KP0 A;  3CW4 A;  3QFP A;  1KAX A;  1NGB A;  1DQ7 A;  4AB0 A;  3LDO A;  1HX1 A;  1QQN A;  4HWI A;  1BA1 A;  1LQQ A;  2ATB A;  2KBJ A;  1ZUT A;  3QFU A;  5AQO A;  5AQR A;  1ZU3 A;  5AQK A;  5AQH A;  2YEO A;  3R2V A;  2KBK A;  1HJO A;  1JXC A;  2LT8 A;  2E0H A;  1NGD A;  1C55 A;  1NPI A;  2N2Q A;  3A8Y A;  1PE4 A;  1BUP A;  2B3C A;  4UAF E;  2QWN A;  1JZB A;  3KOY A;  1NGE A;  4H5N A;  1KAY A;  1T0Z A;  3PSM A;  1BMR A;  4AAZ A;  3AY9 A;  1I6G A;  1K8B A;  1NGF A;  1ICA A;  1ATS A;  1LQH A;  4CQK A;  1L4V A;  1YUW A;  5AQM A;  1NGC A;  4HE7 A;  1BCG A;  5AQU A;  1VNB A;  2QW9 A;  1TI5 A;  2KHO A;  1QQM A;  5AQF A;  1ZVG A;  1LQI A;  1KV0 A; 
#chains in the Genus database with same CATH homology
 3LDL A;  5EXW A;  3KVG A;  5AQR A;  1KAZ A;  3L4I A;  2QWR A;  4IO8 A;  5EVZ A;  3ATU A;  4FSV A;  1NGG A;  3C7N A;  3IUC A;  5FPE A;  5AQT A;  5BPM A;  5AQL A;  4KBO A;  1DKG D;  5AQG A;  5AQZ A;  4FL9 A;  3D2E B;  5FPD A;  5AQQ A;  4UAD E;  3FE1 A;  5BN9 A;  2YIL A;  2VY6 A;  2BUP A;  3D2E A;  3LDN A;  3D2F B;  3FZL A;  2D56 A;  3LDQ A;  5AQW A;  3GDQ A;  3SF4 D;  2E88 A;  5BN8 A;  5F1X A;  1NGA A;  1NGI A;  2QWQ A;  2MN5 A;  2YIP A;  1POI A;  1NGJ A;  5AQX A;  3JXU A;  3M3Z A;  3KHW A;  5AQS A;  1NGH A;  3CQX A;  3L56 A;  3GL1 A;  2QWL A;  5AQY A;  5EX5 A;  2YIO A;  4H5V A;  2QWM A;  4UAE F;  5FPM A;  3L6Q A;  2QWP A;  5AQV A;  5F0X A;  4H5R A;  4GNI A;  3LDP A;  4H5W A;  1QQO A;  2GMO A;  1BA0 A;  2LN8 A;  3BK3 C;  3FZK A;  5FPN A;  5BPN A;  5AQI A;  2QWO A;  3D2F A;  3HSC A;  5AQN A;  1S3X A;  3ATV A;  2MBK A;  1HPM A;  2V7Z A;  2K35 A;  4H5T A;  5AR0 A;  3I33 A;  5AQJ A;  5EY4 A;  3KC6 A;  1ATR A;  5AQP A;  2E2F A;  2E8A A;  3FZM A;  3FZF A;  3C7N B;  5F2R A;  5BPL A;  2JDQ D;  3QML A;  3FZH A;  3CW4 A;  3QFP A;  1KAX A;  1NGB A;  3LDO A;  1HX1 A;  1QQN A;  4HWI A;  1BA1 A;  3QFU A;  5AQO A;  5AQK A;  5AQH A;  3R2V A;  1HJO A;  1NGD A;  3A8Y A;  1BUP A;  4UAF E;  2QWN A;  1NGE A;  4H5N A;  1KAY A;  3AY9 A;  1NGF A;  1ATS A;  1YUW A;  5AQM A;  1NGC A;  5AQU A;  3QI7 A;  2KHO A;  1QQM A;  5AQF A;  2QXL A;  2QW9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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