4HE7A

Crystal structure of brazzein
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
54
structure length
54
Chain Sequence
EDKCKKVYENYPVSKCQLANQCNYDCKLDKHARSGECFYDEKRNLQCICDYCEY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Plant protein
molecule keywords Defensin-like protein
publication title The structure of brazzein, a sweet-tasting protein from the wild African plant Pentadiplandra brazzeana
pubmed doi rcsb
total genus 13
structure length 54
sequence length 54
ec nomenclature
pdb deposition date 2012-10-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 4he7A00
2M8BB 1TI5A 1T0ZA 1I6FA 2BRZA 1B7DA 1PE4A 1ZYWA 1AYJA 1T7EA 4UJ0A 2LR3A 1GPSA 1SNBA 2KJAA 2LY5A 2YC1C 1BK8A 2KBJA 1PTXA 1VNAA 1I6GA 1ZU3A 1SN4A 1WMTA 1WWNA 2KPYA 1ZVEA 1N4NA 1CHZA 1SN1A 2KBHA 4HHFA 4AB0A 1I2VA 1MYNA 1C55A 2SN3A 1NPIA 1BMRA 5CY0A 1BCGA 5KK4A 1L4VA 4AAZA 1B3CA 1CN2A 1P00A 2NY8X 1GPTA 2KSKA 1JZBA 1ZVGA 2B68A 1I2UA 1JZAA 1OMYA 1T7BA 2N66A 2N69A 2YEOA 1VNBA 4CQKA 3PSMA 2B3CA 2N2RA 2KBKA 2LT8A 4HE7A 1MR4A 1LQHA 1DQ7A 1ZFUA 1KV0A 2A7TA 2E0HA 2I61A 1NRBA 2KGQA 2GL1A 2LY6A 1SEGA 1LQQA 1NH5A 3E7RL 2ATBA 2MZ0A 1DJTA 4AEIA 1P0AA 2LI7A 2E3GA 3E7UX 1BRZA 1WT7A 1JXCA 1PX9A 2E3FA 4V1DC 1ICAA 2YBRC 1NE5A 1T1TA 2N2QA 1NRAA 1JKZA 1AHOA 2LKBA 1OZZA 2ASCA 1FH3A 4KYPA 1T7AA 1LQIA 2NY9X 2KYQA 2LJMA 2LJ7A 1ZYVA 1C56A 1ZUTA
chains in the Genus database with same CATH superfamily
2M8BB 1K8BA 1TI5A 5AQKA 2GMOA 3KOWA 5AQGA 1T0ZA 1I6FA 1KAZA 5AQJA 5FPEA 2BRZA 1B7DA 3KVGA 1PE4A 1NGAA 3LDNA 4UAFE 5AQXA 1KAYA 1ZYWA 3FE1A 4H5VA 1DKGD 3GDQA 1NGGA 1T7EA 3D2FB 2KHOA 3R2VA 5AR0A 2LR3A 3D2EB 3FZMA 1HPMA 3KHWA 5EX5A 1GPSA 1SNBA 2KJAA 4H5WA 5FPDA 2VY6A 2QW9A 2LY5A 5AQOA 2D56A 1NGHA 2YC1C 1NGBA 5AQRA 2KBJA 1BK8A 1PTXA 3C7NB 1VNAA 1I6GA 1ZU3A 1SN4A 1WMTA 1WWNA 2KPYA 1ZVEA 1N4NA 2QWNA 1CHZA 2QWOA 1BA0A 1SN1A 2KBHA 2E2FA 4IO8A 5BN8A 2QWLA 4HWIA 4HHFA 1UGLA 4AB0A 2BUPA 3AY9A 1I2VA 1MYNA 3LDOA 3M3ZA 1C55A 2SN3A 3QFUA 1NPIA 1BMRA 5CY0A 1BCGA 5AQQA 5KK4A 3LDLA 5AQVA 3CQXA 2YILA 3IUCA 4H5RA 5AQNA 4AAZA 1L4VA 1B3CA 3KOYA 2MN5A 2QWQA 5AQSA 5EXWA 1CN2A 1BA1A 2QWRA 1P00A 4KBOA 2NY8X 3L4IA 1GPTA 1HJOA 1QQNA 1YUWA 4GNIA 4FL9A 3KOZA 2KSKA 2QWPA 1NGEA 2QWMA 3QFPA 1ATRA 1JZBA 1KAXA 3D2EA 1ZVGA 2YIPA 1NGFA 2YIOA 2B68A 1S3XA 1ATSA 5AQPA 1I2UA 1OMYA 5AQIA 1NGJA 1T7BA 2N66A 3KC6A 2N69A 2YEOA 5AQWA 5BN9A 1VNBA 4CQKA 5BPMA 3PSMA 3ATUA 5AQTA 2B3CA 2N2RA 3ATVA 3GKUA 2KBKA 2LT8A 2E8AA 3BK3C 4HE7A 1MR4A 5FPNA 5AQLA 5AQYA 1LQHA 1NGIA 1DQ7A 3FZLA 4H5TA 3LDQA 1ZFUA 2E88A 1KV0A 1POIA 5F1XA 1QQMA 2A7TA 3FZKA 2E0HA 2I61A 1NRBA 3KOXA 3QMLA 2KGQA 5F2RA 3QI7A 2GL1A 2LY6A 1SEGA 1LQQA 1NH5A 4UJ0A 3D2FA 1NGCA 3E7RL 4UADE 5AQFA 2ATBA 2MZ0A 5AQHA 1BUPA 2G2KA 5EY4A 1DJTA 3C7NA 4AEIA 1ZYVA 1P0AA 3I33A 4UAEF 2LI7A 3KP1A 1NGDA 4H5NA 1XRSB 2E3GA 3E7UX 5BPLA 2QXLA 5BPNA 5AQMA 5F0XA 1WT7A 3SF4D 1BRZA 1JXCA 2V7ZA 1QQOA 1PX9A 2E3FA 3FZFA 2LN8A 3L6QA 2JDQD 4V1DC 1AYJA 2MBKA 1ICAA 2K35A 2YBRC 5FPMA 1NE5A 1T1TA 2N2QA 1NRAA 3CW4A 5EVZA 5AQUA 1JKZA 3FZHA 1AHOA 2LKBA 1OZZA 2ASCA 3LDPA 1FH3A 4KYPA 5AQZA 1T7AA 3GL1A 4FSVA 1LQIA 2NY9X 3JXUA 2KYQA 3KP0A 3A8YA 1HX1A 3L56A 2LJMA 3HSCA 2LJ7A 1JZAA 1C56A 1ZUTA
chains in the Genus database with same CATH topology
2M8BB 1TI5A 1T0ZA 1I6FA 2BRZA 1B7DA 1PE4A 1ZYWA 1AYJA 1T7EA 4UJ0A 2LR3A 1GPSA 1SNBA 2KJAA 2LY5A 2YC1C 1BK8A 2KBJA 1PTXA 1VNAA 1I6GA 1ZU3A 1SN4A 1WMTA 1WWNA 2KPYA 1ZVEA 1N4NA 1CHZA 1SN1A 2KBHA 4HHFA 4AB0A 1I2VA 1MYNA 1C55A 2SN3A 1NPIA 1BMRA 5CY0A 1BCGA 5KK4A 1L4VA 4AAZA 1B3CA 1CN2A 1P00A 2NY8X 1GPTA 2KSKA 1JZBA 1ZVGA 2B68A 1I2UA 1JZAA 1OMYA 1T7BA 2N66A 2N69A 2YEOA 1VNBA 4CQKA 3PSMA 2B3CA 2N2RA 2KBKA 2LT8A 4HE7A 1MR4A 1LQHA 1DQ7A 1ZFUA 1KV0A 2A7TA 2E0HA 2I61A 1NRBA 2KGQA 2GL1A 2LY6A 1SEGA 1LQQA 1NH5A 3E7RL 2ATBA 2MZ0A 1DJTA 4AEIA 1P0AA 2LI7A 2E3GA 3E7UX 1BRZA 1WT7A 1JXCA 1PX9A 2E3FA 4V1DC 1ICAA 2YBRC 1NE5A 1T1TA 2N2QA 1NRAA 1JKZA 1AHOA 2LKBA 1OZZA 2ASCA 1FH3A 4KYPA 1T7AA 1LQIA 2NY9X 2KYQA 2LJMA 2LJ7A 1ZYVA 1C56A 1ZUTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2M8B B;  1TI5 A;  1T0Z A;  1I6F A;  2BRZ A;  1B7D A;  1PE4 A;  1ZYW A;  1AYJ A;  1T7E A;  4UJ0 A;  2LR3 A;  1GPS A;  1SNB A;  2KJA A;  2LY5 A;  2YC1 C;  1BK8 A;  2KBJ A;  1PTX A;  1VNA A;  1I6G A;  1ZU3 A;  1SN4 A;  1WMT A;  1WWN A;  2KPY A;  1ZVE A;  1N4N A;  1CHZ A;  1SN1 A;  2KBH A;  4HHF A;  4AB0 A;  1I2V A;  1MYN A;  1C55 A;  2SN3 A;  1NPI A;  1BMR A;  5CY0 A;  1BCG A;  5KK4 A;  1L4V A;  4AAZ A;  1B3C A;  1CN2 A;  1P00 A;  2NY8 X;  1GPT A;  2KSK A;  1JZB A;  1ZVG A;  2B68 A;  1I2U A;  1JZA A;  1OMY A;  1T7B A;  2N66 A;  2N69 A;  2YEO A;  1VNB A;  4CQK A;  3PSM A;  2B3C A;  2N2R A;  2KBK A;  2LT8 A;  4HE7 A;  1MR4 A;  1LQH A;  1DQ7 A;  1ZFU A;  1KV0 A;  2A7T A;  2E0H A;  2I61 A;  1NRB A;  2KGQ A;  2GL1 A;  2LY6 A;  1SEG A;  1LQQ A;  1NH5 A;  3E7R L;  2ATB A;  2MZ0 A;  1DJT A;  4AEI A;  1P0A A;  2LI7 A;  2E3G A;  3E7U X;  1BRZ A;  1WT7 A;  1JXC A;  1PX9 A;  2E3F A;  4V1D C;  1ICA A;  2YBR C;  1NE5 A;  1T1T A;  2N2Q A;  1NRA A;  1JKZ A;  1AHO A;  2LKB A;  1OZZ A;  2ASC A;  1FH3 A;  4KYP A;  1T7A A;  1LQI A;  2NY9 X;  2KYQ A;  2LJM A;  2LJ7 A;  1ZYV A;  1C56 A;  1ZUT A; 
#chains in the Genus database with same CATH topology
 2M8B B;  1K8B A;  1TI5 A;  5AQK A;  2GMO A;  3KOW A;  5AQG A;  1T0Z A;  1I6F A;  1KAZ A;  5AQJ A;  5FPE A;  2BRZ A;  1B7D A;  3KVG A;  1PE4 A;  1NGA A;  3LDN A;  4UAF E;  5AQX A;  1KAY A;  1ZYW A;  3FE1 A;  4H5V A;  1DKG D;  3GDQ A;  1NGG A;  1T7E A;  3D2F B;  2KHO A;  3R2V A;  5AR0 A;  2LR3 A;  3D2E B;  3FZM A;  1HPM A;  3KHW A;  5EX5 A;  1GPS A;  1SNB A;  2KJA A;  4H5W A;  5FPD A;  2VY6 A;  2QW9 A;  2LY5 A;  5AQO A;  2D56 A;  1NGH A;  2YC1 C;  1NGB A;  5AQR A;  2KBJ A;  1BK8 A;  1PTX A;  3C7N B;  1VNA A;  1I6G A;  1ZU3 A;  1SN4 A;  1WMT A;  1WWN A;  2KPY A;  1ZVE A;  1N4N A;  2QWN A;  1CHZ A;  2QWO A;  1BA0 A;  1SN1 A;  2KBH A;  2E2F A;  4IO8 A;  5BN8 A;  2QWL A;  4HWI A;  4HHF A;  1UGL A;  4AB0 A;  2BUP A;  3AY9 A;  1I2V A;  1MYN A;  3LDO A;  3M3Z A;  1C55 A;  2SN3 A;  3QFU A;  1NPI A;  1BMR A;  5CY0 A;  1BCG A;  5AQQ A;  5KK4 A;  3LDL A;  5AQV A;  3CQX A;  2YIL A;  3IUC A;  4H5R A;  5AQN A;  4AAZ A;  1L4V A;  1B3C A;  3KOY A;  2MN5 A;  2QWQ A;  5AQS A;  5EXW A;  1CN2 A;  1BA1 A;  2QWR A;  1P00 A;  4KBO A;  2NY8 X;  3L4I A;  1GPT A;  1HJO A;  1QQN A;  1YUW A;  4GNI A;  4FL9 A;  3KOZ A;  2KSK A;  2QWP A;  1NGE A;  2QWM A;  3QFP A;  1ATR A;  1JZB A;  1KAX A;  3D2E A;  1ZVG A;  2YIP A;  1NGF A;  2YIO A;  2B68 A;  1S3X A;  1ATS A;  5AQP A;  1I2U A;  1OMY A;  5AQI A;  1NGJ A;  1T7B A;  2N66 A;  3KC6 A;  2N69 A;  2YEO A;  5AQW A;  5BN9 A;  1VNB A;  4CQK A;  5BPM A;  3PSM A;  3ATU A;  5AQT A;  2B3C A;  2N2R A;  3ATV A;  3GKU A;  2KBK A;  2LT8 A;  2E8A A;  3BK3 C;  4HE7 A;  1MR4 A;  5FPN A;  5AQL A;  5AQY A;  1LQH A;  1NGI A;  1DQ7 A;  3FZL A;  4H5T A;  3LDQ A;  1ZFU A;  2E88 A;  1KV0 A;  1POI A;  5F1X A;  1QQM A;  2A7T A;  3FZK A;  2E0H A;  2I61 A;  1NRB A;  3KOX A;  3QML A;  2KGQ A;  5F2R A;  3QI7 A;  2GL1 A;  2LY6 A;  1SEG A;  1LQQ A;  1NH5 A;  4UJ0 A;  3D2F A;  1NGC A;  3E7R L;  4UAD E;  5AQF A;  2ATB A;  2MZ0 A;  5AQH A;  1BUP A;  2G2K A;  5EY4 A;  1DJT A;  3C7N A;  4AEI A;  1ZYV A;  1P0A A;  3I33 A;  4UAE F;  2LI7 A;  3KP1 A;  1NGD A;  4H5N A;  1XRS B;  2E3G A;  3E7U X;  5BPL A;  2QXL A;  5BPN A;  5AQM A;  5F0X A;  1WT7 A;  3SF4 D;  1BRZ A;  1JXC A;  2V7Z A;  1QQO A;  1PX9 A;  2E3F A;  3FZF A;  2LN8 A;  3L6Q A;  2JDQ D;  4V1D C;  1AYJ A;  2MBK A;  1ICA A;  2K35 A;  2YBR C;  5FPM A;  1NE5 A;  1T1T A;  2N2Q A;  1NRA A;  3CW4 A;  5EVZ A;  5AQU A;  1JKZ A;  3FZH A;  1AHO A;  2LKB A;  1OZZ A;  2ASC A;  3LDP A;  1FH3 A;  4KYP A;  5AQZ A;  1T7A A;  3GL1 A;  4FSV A;  1LQI A;  2NY9 X;  3JXU A;  2KYQ A;  3KP0 A;  3A8Y A;  1HX1 A;  3L56 A;  2LJM A;  3HSC A;  2LJ7 A;  1JZA A;  1C56 A;  1ZUT A; 
#chains in the Genus database with same CATH homology
 2M8B B;  1TI5 A;  1T0Z A;  1I6F A;  2BRZ A;  1B7D A;  1PE4 A;  1ZYW A;  1AYJ A;  1T7E A;  4UJ0 A;  2LR3 A;  1GPS A;  1SNB A;  2KJA A;  2LY5 A;  2YC1 C;  1BK8 A;  2KBJ A;  1PTX A;  1VNA A;  1I6G A;  1ZU3 A;  1SN4 A;  1WMT A;  1WWN A;  2KPY A;  1ZVE A;  1N4N A;  1CHZ A;  1SN1 A;  2KBH A;  4HHF A;  4AB0 A;  1I2V A;  1MYN A;  1C55 A;  2SN3 A;  1NPI A;  1BMR A;  5CY0 A;  1BCG A;  5KK4 A;  1L4V A;  4AAZ A;  1B3C A;  1CN2 A;  1P00 A;  2NY8 X;  1GPT A;  2KSK A;  1JZB A;  1ZVG A;  2B68 A;  1I2U A;  1JZA A;  1OMY A;  1T7B A;  2N66 A;  2N69 A;  2YEO A;  1VNB A;  4CQK A;  3PSM A;  2B3C A;  2N2R A;  2KBK A;  2LT8 A;  4HE7 A;  1MR4 A;  1LQH A;  1DQ7 A;  1ZFU A;  1KV0 A;  2A7T A;  2E0H A;  2I61 A;  1NRB A;  2KGQ A;  2GL1 A;  2LY6 A;  1SEG A;  1LQQ A;  1NH5 A;  3E7R L;  2ATB A;  2MZ0 A;  1DJT A;  4AEI A;  1P0A A;  2LI7 A;  2E3G A;  3E7U X;  1BRZ A;  1WT7 A;  1JXC A;  1PX9 A;  2E3F A;  4V1D C;  1ICA A;  2YBR C;  1NE5 A;  1T1T A;  2N2Q A;  1NRA A;  1JKZ A;  1AHO A;  2LKB A;  1OZZ A;  2ASC A;  1FH3 A;  4KYP A;  1T7A A;  1LQI A;  2NY9 X;  2KYQ A;  2LJM A;  2LJ7 A;  1ZYV A;  1C56 A;  1ZUT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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