2LT8A

Eurocin solution structure
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
42
structure length
42
Chain Sequence
GFGCPGDAYQCSEHCRALGGGRTGGYCAGPWYLGHPTCTCSF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antimicrobial protein
molecule keywords eurocin
publication title Eurocin, a New Fungal Defensin: STRUCTURE, LIPID BINDING, AND ITS MODE OF ACTION.
pubmed doi rcsb
source organism Eurotium amstelodami
total genus 7
structure length 42
sequence length 42
ec nomenclature
pdb deposition date 2012-05-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01097 Defensin_2 Arthropod defensin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 2lt8A01
1SN4A 4UJ0A 1BK8A 2LKBA 2NY8X 1T0ZA 2N2QA 2LY5A 1SNBA 1I2UA 2KBJA 1ZYVA 2YEOA 1MYNA 1P00A 1BCGA 3PSMA 1WWNA 1LQQA 1WMTA 2KBHA 2N2RA 1MR4A 1ICAA 4AB0A 4AEIA 1B7DA 1CN2A 1JXCA 1GPSA 1BRZA 1T1TA 1NRAA 2YBRC 1I2VA 1T7BA 1NH5A 1NE5A 1DQ7A 1ZU3A 2M8BB 2A7TA 4AAZA 2KYQA 2E3FA 1ZFUA 1NPIA 2LI7A 5CY0A 4HE7A 3E7RL 1AYJA 1CHZA 1ZVGA 1ZVEA 2SN3A 2LJMA 1I6GA 2NY9X 2B68A 1BMRA 2YC1C 1L4VA 2N69A 2LT8A 2KBKA 2LJ7A 1I6FA 1C55A 1FH3A 1KV0A 1DJTA 4HHFA 1PX9A 2I61A 2KGQA 4KYPA 1NRBA 1ZUTA 1WT7A 2E3GA 1T7AA 1VNBA 2ASCA 2B3CA 4CQKA 2GL1A 1LQHA 2KJAA 3E7UX 2KPYA 1SN1A 1GPTA 1N4NA 2N66A 2LR3A 1TI5A 1T7EA 2ATBA 4V1DC 1PTXA 1JZBA 1P0AA 1OZZA 5KK4A 1AHOA 1JKZA 1B3CA 1SEGA 2LY6A 1LQIA 2BRZA 2MZ0A 1OMYA 1VNAA 1PE4A 2KSKA 1C56A 1JZAA 2E0HA 1ZYWA
chains in the Genus database with same CATH superfamily
2QWQA 5AQHA 1SN4A 4UJ0A 5BPNA 1BK8A 2LKBA 2NY8X 1S3XA 5AQWA 2GMOA 1T0ZA 3KP0A 2N2QA 3KOWA 5AQPA 2LY5A 3FZMA 3FZHA 1SNBA 3A8YA 2BUPA 1I2UA 2KBJA 5EY4A 1ZYVA 4UAEF 1XRSB 3FZKA 2G2KA 5AQNA 2YEOA 5BPMA 5AQFA 1HX1A 1KAXA 1MYNA 5AQYA 3FZLA 1P00A 1BCGA 3PSMA 1WWNA 1LQQA 5BN8A 1WMTA 3QFUA 2KBHA 2V7ZA 2N2RA 1MR4A 3CQXA 3CW4A 5AQGA 3LDNA 1ICAA 3LDOA 3LDPA 5AR0A 4AB0A 4H5TA 1K8BA 4AEIA 1B7DA 3FZFA 1CN2A 1JXCA 3KHWA 3LDLA 1GPSA 3SF4D 1BRZA 1T1TA 1NRAA 2YBRC 3KOZA 1I2VA 2K35A 3KC6A 5EXWA 5FPNA 1T7BA 1NH5A 1NE5A 1DQ7A 1ZU3A 2M8BB 2A7TA 4AAZA 2LN8A 2KYQA 2E3FA 1ZFUA 1NPIA 1NGGA 2LI7A 2QWLA 3ATVA 3E7RL 1YUWA 3GKUA 3L4IA 3L6QA 3LDQA 3QMLA 4HE7A 5AQIA 1AYJA 1NGIA 5CY0A 1CHZA 1ZVGA 3QI7A 1ZVEA 5AQMA 1QQOA 5EX5A 2SN3A 5FPMA 2LJMA 3L56A 1NGFA 2JDQD 2NY9X 2YILA 3D2FA 4UADE 1I6GA 2MN5A 1NGBA 1KAYA 2QWOA 3HSCA 1BA0A 5AQVA 5FPDA 2B68A 1BMRA 2QXLA 2D56A 5EVZA 5AQKA 2YC1C 3C7NA 1L4VA 2N69A 4HWIA 3KP1A 3R2VA 2QWNA 2LT8A 4GNIA 5BN9A 2KBKA 3I33A 1NGEA 2LJ7A 1I6FA 1C55A 1QQMA 2MBKA 4KBOA 1KV0A 2YIOA 5AQUA 1NGCA 5AQJA 5F0XA 1FH3A 1DJTA 2QWPA 4H5VA 4HHFA 5FPEA 1PX9A 2E8AA 2I61A 2KGQA 4KYPA 1BA1A 5AQTA 1NRBA 1ZUTA 1WT7A 2E3GA 1T7AA 2VY6A 3JXUA 1VNBA 2ASCA 2B3CA 3M3ZA 5AQXA 4CQKA 2GL1A 5AQLA 1LQHA 2KJAA 1NGJA 3GL1A 1NGDA 2E88A 1HJOA 2QWMA 3C7NB 2KPYA 1SN1A 2YIPA 3E7UX 5AQOA 3FE1A 3QFPA 5BPLA 1GPTA 1HPMA 1N4NA 4FL9A 5AQSA 2N66A 3AY9A 4IO8A 3D2EA 2E2FA 1TI5A 2LR3A 1QQNA 1T7EA 2ATBA 4V1DC 1DKGD 3D2FB 1PTXA 1JZBA 1P0AA 3KOXA 1OZZA 5KK4A 4H5RA 1AHOA 4H5NA 1B3CA 1JKZA 1SEGA 3BK3C 5F1XA 2LY6A 1LQIA 1ATRA 3D2EB 5AQQA 2BRZA 3KOYA 2MZ0A 1UGLA 1ATSA 1POIA 1NGAA 1OMYA 1KAZA 1VNAA 1NGHA 1PE4A 2KSKA 2QW9A 5AQZA 4UAFE 5AQRA 4FSVA 1BUPA 1C56A 1JZAA 2QWRA 3GDQA 2E0HA 4H5WA 3ATUA 3KVGA 1ZYWA 5F2RA 3IUCA 2KHOA
chains in the Genus database with same CATH topology
1SN4A 4UJ0A 1BK8A 2LKBA 2NY8X 1T0ZA 2N2QA 2LY5A 1SNBA 1I2UA 2KBJA 1ZYVA 2YEOA 1MYNA 1P00A 1BCGA 3PSMA 1WWNA 1LQQA 1WMTA 2KBHA 2N2RA 1MR4A 1ICAA 4AB0A 4AEIA 1B7DA 1CN2A 1JXCA 1GPSA 1BRZA 1T1TA 1NRAA 2YBRC 1I2VA 1T7BA 1NH5A 1NE5A 1DQ7A 1ZU3A 2M8BB 2A7TA 4AAZA 2KYQA 2E3FA 1ZFUA 1NPIA 2LI7A 5CY0A 4HE7A 3E7RL 1AYJA 1CHZA 1ZVGA 1ZVEA 2SN3A 2LJMA 1I6GA 2NY9X 2B68A 1BMRA 2YC1C 1L4VA 2N69A 2LT8A 2KBKA 2LJ7A 1I6FA 1C55A 1FH3A 1KV0A 1DJTA 4HHFA 1PX9A 2I61A 2KGQA 4KYPA 1NRBA 1ZUTA 1WT7A 2E3GA 1T7AA 1VNBA 2ASCA 2B3CA 4CQKA 2GL1A 1LQHA 2KJAA 3E7UX 2KPYA 1SN1A 1GPTA 1N4NA 2N66A 2LR3A 1TI5A 1T7EA 2ATBA 4V1DC 1PTXA 1JZBA 1P0AA 1OZZA 5KK4A 1AHOA 1JKZA 1B3CA 1SEGA 2LY6A 1LQIA 2BRZA 2MZ0A 1OMYA 1VNAA 1PE4A 2KSKA 1C56A 1JZAA 2E0HA 1ZYWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SN4 A;  4UJ0 A;  1BK8 A;  2LKB A;  2NY8 X;  1T0Z A;  2N2Q A;  2LY5 A;  1SNB A;  1I2U A;  2KBJ A;  1ZYV A;  2YEO A;  1MYN A;  1P00 A;  1BCG A;  3PSM A;  1WWN A;  1LQQ A;  1WMT A;  2KBH A;  2N2R A;  1MR4 A;  1ICA A;  4AB0 A;  4AEI A;  1B7D A;  1CN2 A;  1JXC A;  1GPS A;  1BRZ A;  1T1T A;  1NRA A;  2YBR C;  1I2V A;  1T7B A;  1NH5 A;  1NE5 A;  1DQ7 A;  1ZU3 A;  2M8B B;  2A7T A;  4AAZ A;  2KYQ A;  2E3F A;  1ZFU A;  1NPI A;  2LI7 A;  5CY0 A;  4HE7 A;  3E7R L;  1AYJ A;  1CHZ A;  1ZVG A;  1ZVE A;  2SN3 A;  2LJM A;  1I6G A;  2NY9 X;  2B68 A;  1BMR A;  2YC1 C;  1L4V A;  2N69 A;  2LT8 A;  2KBK A;  2LJ7 A;  1I6F A;  1C55 A;  1FH3 A;  1KV0 A;  1DJT A;  4HHF A;  1PX9 A;  2I61 A;  2KGQ A;  4KYP A;  1NRB A;  1ZUT A;  1WT7 A;  2E3G A;  1T7A A;  1VNB A;  2ASC A;  2B3C A;  4CQK A;  2GL1 A;  1LQH A;  2KJA A;  3E7U X;  2KPY A;  1SN1 A;  1GPT A;  1N4N A;  2N66 A;  2LR3 A;  1TI5 A;  1T7E A;  2ATB A;  4V1D C;  1PTX A;  1JZB A;  1P0A A;  1OZZ A;  5KK4 A;  1AHO A;  1JKZ A;  1B3C A;  1SEG A;  2LY6 A;  1LQI A;  2BRZ A;  2MZ0 A;  1OMY A;  1VNA A;  1PE4 A;  2KSK A;  1C56 A;  1JZA A;  2E0H A;  1ZYW A; 
#chains in the Genus database with same CATH topology
 2QWQ A;  5AQH A;  1SN4 A;  4UJ0 A;  5BPN A;  1BK8 A;  2LKB A;  2NY8 X;  1S3X A;  5AQW A;  2GMO A;  1T0Z A;  3KP0 A;  2N2Q A;  3KOW A;  5AQP A;  2LY5 A;  3FZM A;  3FZH A;  1SNB A;  3A8Y A;  2BUP A;  1I2U A;  2KBJ A;  5EY4 A;  1ZYV A;  4UAE F;  1XRS B;  3FZK A;  2G2K A;  5AQN A;  2YEO A;  5BPM A;  5AQF A;  1HX1 A;  1KAX A;  1MYN A;  5AQY A;  3FZL A;  1P00 A;  1BCG A;  3PSM A;  1WWN A;  1LQQ A;  5BN8 A;  1WMT A;  3QFU A;  2KBH A;  2V7Z A;  2N2R A;  1MR4 A;  3CQX A;  3CW4 A;  5AQG A;  3LDN A;  1ICA A;  3LDO A;  3LDP A;  5AR0 A;  4AB0 A;  4H5T A;  1K8B A;  4AEI A;  1B7D A;  3FZF A;  1CN2 A;  1JXC A;  3KHW A;  3LDL A;  1GPS A;  3SF4 D;  1BRZ A;  1T1T A;  1NRA A;  2YBR C;  3KOZ A;  1I2V A;  2K35 A;  3KC6 A;  5EXW A;  5FPN A;  1T7B A;  1NH5 A;  1NE5 A;  1DQ7 A;  1ZU3 A;  2M8B B;  2A7T A;  4AAZ A;  2LN8 A;  2KYQ A;  2E3F A;  1ZFU A;  1NPI A;  1NGG A;  2LI7 A;  2QWL A;  3ATV A;  3E7R L;  1YUW A;  3GKU A;  3L4I A;  3L6Q A;  3LDQ A;  3QML A;  4HE7 A;  5AQI A;  1AYJ A;  1NGI A;  5CY0 A;  1CHZ A;  1ZVG A;  3QI7 A;  1ZVE A;  5AQM A;  1QQO A;  5EX5 A;  2SN3 A;  5FPM A;  2LJM A;  3L56 A;  1NGF A;  2JDQ D;  2NY9 X;  2YIL A;  3D2F A;  4UAD E;  1I6G A;  2MN5 A;  1NGB A;  1KAY A;  2QWO A;  3HSC A;  1BA0 A;  5AQV A;  5FPD A;  2B68 A;  1BMR A;  2QXL A;  2D56 A;  5EVZ A;  5AQK A;  2YC1 C;  3C7N A;  1L4V A;  2N69 A;  4HWI A;  3KP1 A;  3R2V A;  2QWN A;  2LT8 A;  4GNI A;  5BN9 A;  2KBK A;  3I33 A;  1NGE A;  2LJ7 A;  1I6F A;  1C55 A;  1QQM A;  2MBK A;  4KBO A;  1KV0 A;  2YIO A;  5AQU A;  1NGC A;  5AQJ A;  5F0X A;  1FH3 A;  1DJT A;  2QWP A;  4H5V A;  4HHF A;  5FPE A;  1PX9 A;  2E8A A;  2I61 A;  2KGQ A;  4KYP A;  1BA1 A;  5AQT A;  1NRB A;  1ZUT A;  1WT7 A;  2E3G A;  1T7A A;  2VY6 A;  3JXU A;  1VNB A;  2ASC A;  2B3C A;  3M3Z A;  5AQX A;  4CQK A;  2GL1 A;  5AQL A;  1LQH A;  2KJA A;  1NGJ A;  3GL1 A;  1NGD A;  2E88 A;  1HJO A;  2QWM A;  3C7N B;  2KPY A;  1SN1 A;  2YIP A;  3E7U X;  5AQO A;  3FE1 A;  3QFP A;  5BPL A;  1GPT A;  1HPM A;  1N4N A;  4FL9 A;  5AQS A;  2N66 A;  3AY9 A;  4IO8 A;  3D2E A;  2E2F A;  1TI5 A;  2LR3 A;  1QQN A;  1T7E A;  2ATB A;  4V1D C;  1DKG D;  3D2F B;  1PTX A;  1JZB A;  1P0A A;  3KOX A;  1OZZ A;  5KK4 A;  4H5R A;  1AHO A;  4H5N A;  1B3C A;  1JKZ A;  1SEG A;  3BK3 C;  5F1X A;  2LY6 A;  1LQI A;  1ATR A;  3D2E B;  5AQQ A;  2BRZ A;  3KOY A;  2MZ0 A;  1UGL A;  1ATS A;  1POI A;  1NGA A;  1OMY A;  1KAZ A;  1VNA A;  1NGH A;  1PE4 A;  2KSK A;  2QW9 A;  5AQZ A;  4UAF E;  5AQR A;  4FSV A;  1BUP A;  1C56 A;  1JZA A;  2QWR A;  3GDQ A;  2E0H A;  4H5W A;  3ATU A;  3KVG A;  1ZYW A;  5F2R A;  3IUC A;  2KHO A; 
#chains in the Genus database with same CATH homology
 1SN4 A;  4UJ0 A;  1BK8 A;  2LKB A;  2NY8 X;  1T0Z A;  2N2Q A;  2LY5 A;  1SNB A;  1I2U A;  2KBJ A;  1ZYV A;  2YEO A;  1MYN A;  1P00 A;  1BCG A;  3PSM A;  1WWN A;  1LQQ A;  1WMT A;  2KBH A;  2N2R A;  1MR4 A;  1ICA A;  4AB0 A;  4AEI A;  1B7D A;  1CN2 A;  1JXC A;  1GPS A;  1BRZ A;  1T1T A;  1NRA A;  2YBR C;  1I2V A;  1T7B A;  1NH5 A;  1NE5 A;  1DQ7 A;  1ZU3 A;  2M8B B;  2A7T A;  4AAZ A;  2KYQ A;  2E3F A;  1ZFU A;  1NPI A;  2LI7 A;  5CY0 A;  4HE7 A;  3E7R L;  1AYJ A;  1CHZ A;  1ZVG A;  1ZVE A;  2SN3 A;  2LJM A;  1I6G A;  2NY9 X;  2B68 A;  1BMR A;  2YC1 C;  1L4V A;  2N69 A;  2LT8 A;  2KBK A;  2LJ7 A;  1I6F A;  1C55 A;  1FH3 A;  1KV0 A;  1DJT A;  4HHF A;  1PX9 A;  2I61 A;  2KGQ A;  4KYP A;  1NRB A;  1ZUT A;  1WT7 A;  2E3G A;  1T7A A;  1VNB A;  2ASC A;  2B3C A;  4CQK A;  2GL1 A;  1LQH A;  2KJA A;  3E7U X;  2KPY A;  1SN1 A;  1GPT A;  1N4N A;  2N66 A;  2LR3 A;  1TI5 A;  1T7E A;  2ATB A;  4V1D C;  1PTX A;  1JZB A;  1P0A A;  1OZZ A;  5KK4 A;  1AHO A;  1JKZ A;  1B3C A;  1SEG A;  2LY6 A;  1LQI A;  2BRZ A;  2MZ0 A;  1OMY A;  1VNA A;  1PE4 A;  2KSK A;  1C56 A;  1JZA A;  2E0H A;  1ZYW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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