1ICAA

Refined three-dimensional structure of insect defensin a
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
40
structure length
40
Chain Sequence
ATCDLLSGTGINHSACAAHCLLRGNRGGYCNGKGVCVCRN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antibacterial protein
molecule keywords INSECT DEFENSIN A
publication title Refined three-dimensional solution structure of insect defensin A.
pubmed doi rcsb
source organism Protophormia terraenovae
total genus 6
structure length 40
sequence length 40
ec nomenclature
pdb deposition date 1994-12-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01097 Defensin_2 Arthropod defensin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1icaA00
1LQHA 1NH5A 1B7DA 1DQ7A 1L4VA 1FH3A 1ZUTA 1VNBA 2GL1A 2I61A 2N2RA 1C56A 2E0HA 1ZVGA 2KSKA 2KBKA 2B68A 1DJTA 2LY5A 2E3FA 1N4NA 1KV0A 1PTXA 1ZVEA 4AB0A 1BMRA 1I6GA 2M8BB 1NRAA 2ATBA 5KK4A 1OMYA 1P0AA 4HE7A 4UJ0A 2N69A 2KBHA 2A7TA 3E7RL 5CY0A 2ASCA 2LI7A 1JKZA 1SN4A 1T7BA 1ZFUA 1PX9A 2LR3A 1JXCA 1MYNA 1CHZA 1PE4A 1WMTA 2MZ0A 2KJAA 1CN2A 1SNBA 1VNAA 1AYJA 1NRBA 2N66A 1SEGA 1P00A 4HHFA 2LY6A 1JZBA 4AEIA 1T7EA 2LJMA 1WT7A 1JZAA 4CQKA 1I2UA 1NPIA 2E3GA 1BRZA 1I2VA 2N2QA 2KPYA 1ICAA 1T7AA 3PSMA 1LQQA 1TI5A 1BCGA 2YBRC 1ZU3A 1T0ZA 1ZYWA 1GPSA 3E7UX 1ZYVA 1I6FA 2SN3A 2LT8A 1OZZA 1GPTA 2LJ7A 4KYPA 2KBJA 1SN1A 1C55A 2NY8X 1AHOA 1MR4A 1T1TA 1WWNA 1NE5A 4V1DC 2YC1C 4AAZA 2BRZA 1BK8A 1LQIA 2B3CA 2LKBA 2NY9X 2KGQA 2YEOA 2KYQA 1B3CA
chains in the Genus database with same CATH superfamily
1LQHA 1NH5A 5AQVA 1B7DA 2MBKA 1DQ7A 1L4VA 3D2EA 4H5TA 3ATVA 1FH3A 1ZUTA 3JXUA 1VNBA 3QI7A 1NGFA 2D56A 3D2EB 1XRSB 2E2FA 2GL1A 5EVZA 2I61A 5EY4A 2QWOA 1NGGA 2YIPA 1S3XA 1NGCA 2N2RA 1C56A 2E0HA 5BPLA 1HPMA 1ZVGA 5EXWA 2KSKA 2KBKA 5AQQA 5AR0A 2B68A 3I33A 1DJTA 1KAXA 1NGHA 2LY5A 2E3FA 1BA0A 1N4NA 3KVGA 1KV0A 3GDQA 3IUCA 1YUWA 5FPNA 1PTXA 1ZVEA 4FSVA 2V7ZA 2YILA 5AQUA 5AQYA 5AQXA 4AB0A 1BMRA 1I6GA 2M8BB 1NRAA 3L4IA 5BPMA 2ATBA 5BN8A 4UAFE 5FPDA 5FPEA 5KK4A 1ATRA 1OMYA 1P0AA 1NGIA 4HE7A 2YIOA 4UJ0A 1NGBA 3LDNA 5BN9A 2N69A 4GNIA 2KBHA 2GMOA 2QWQA 3GKUA 3LDQA 3QMLA 2A7TA 1B3CA 3E7RL 3KP0A 3FZKA 4H5NA 2QW9A 4H5WA 3FZLA 5AQTA 5AQPA 2K35A 5CY0A 3KP1A 1HJOA 2ASCA 2LI7A 3FZFA 1JKZA 1SN4A 1T7BA 1ZFUA 2E8AA 1PX9A 2LR3A 1JXCA 3A8YA 3BK3C 3KOWA 1K8BA 5EX5A 1MYNA 5FPMA 5AQHA 1CHZA 1PE4A 1WMTA 3LDLA 4FL9A 3FE1A 3KC6A 1HX1A 2MZ0A 4UADE 2KJAA 5F1XA 1CN2A 2QWRA 5AQNA 1SNBA 2MN5A 1NGAA 1VNAA 3KOYA 3SF4D 4UAEF 1AYJA 1NRBA 2N66A 1NGEA 1SEGA 1NGJA 1POIA 1P00A 4HHFA 2LY6A 3CW4A 1JZBA 2G2KA 4AEIA 1T7EA 1ATSA 1UGLA 3D2FA 2E88A 2LJMA 1WT7A 1NGDA 2BUPA 5F2RA 1JZAA 2VY6A 1KAYA 3KHWA 4CQKA 1I2UA 1NPIA 3D2FB 3L6QA 2E3GA 3LDPA 4IO8A 1BRZA 3L56A 1I2VA 3C7NA 1BUPA 2N2QA 2KPYA 5AQKA 1ICAA 1T7AA 3CQXA 1QQOA 2QWPA 3C7NB 5AQGA 3KOXA 1LQQA 3PSMA 1TI5A 4H5VA 5AQLA 2QXLA 3LDOA 1BCGA 5AQMA 2YBRC 5F0XA 1ZU3A 1T0ZA 1ZYWA 5BPNA 3E7UX 1ZYVA 3R2VA 1I6FA 1GPSA 2SN3A 3FZMA 3ATUA 3GL1A 3KOZA 3FZHA 4HWIA 3QFPA 3AY9A 2LT8A 1OZZA 5AQWA 1BA1A 1GPTA 5AQSA 1KAZA 5AQRA 5AQOA 1QQNA 2LJ7A 4KYPA 1QQMA 2KBJA 5AQJA 2KHOA 1SN1A 1C55A 2NY8X 3M3ZA 1AHOA 3HSCA 1MR4A 1T1TA 2JDQD 2QWMA 2QWNA 5AQIA 1WWNA 3QFUA 1NE5A 2LN8A 4V1DC 2YC1C 4AAZA 2BRZA 1BK8A 1DKGD 2QWLA 1LQIA 5AQFA 2B3CA 2LKBA 2NY9X 2KGQA 2YEOA 4KBOA 2KYQA 5AQZA 4H5RA
chains in the Genus database with same CATH topology
1LQHA 1NH5A 1B7DA 1DQ7A 1L4VA 1FH3A 1ZUTA 1VNBA 2GL1A 2I61A 2N2RA 1C56A 2E0HA 1ZVGA 2KSKA 2KBKA 2B68A 1DJTA 2LY5A 2E3FA 1N4NA 1KV0A 1PTXA 1ZVEA 4AB0A 1BMRA 1I6GA 2M8BB 1NRAA 2ATBA 5KK4A 1OMYA 1P0AA 4HE7A 4UJ0A 2N69A 2KBHA 2A7TA 3E7RL 5CY0A 2ASCA 2LI7A 1JKZA 1SN4A 1T7BA 1ZFUA 1PX9A 2LR3A 1JXCA 1MYNA 1CHZA 1PE4A 1WMTA 2MZ0A 2KJAA 1CN2A 1SNBA 1VNAA 1AYJA 1NRBA 2N66A 1SEGA 1P00A 4HHFA 2LY6A 1JZBA 4AEIA 1T7EA 2LJMA 1WT7A 1JZAA 4CQKA 1I2UA 1NPIA 2E3GA 1BRZA 1I2VA 2N2QA 2KPYA 1ICAA 1T7AA 3PSMA 1LQQA 1TI5A 1BCGA 2YBRC 1ZU3A 1T0ZA 1ZYWA 1GPSA 3E7UX 1ZYVA 1I6FA 2SN3A 2LT8A 1OZZA 1GPTA 2LJ7A 4KYPA 2KBJA 1SN1A 1C55A 2NY8X 1AHOA 1MR4A 1T1TA 1WWNA 1NE5A 4V1DC 2YC1C 4AAZA 2BRZA 1BK8A 1LQIA 2B3CA 2LKBA 2NY9X 2KGQA 2YEOA 2KYQA 1B3CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LQH A;  1NH5 A;  1B7D A;  1DQ7 A;  1L4V A;  1FH3 A;  1ZUT A;  1VNB A;  2GL1 A;  2I61 A;  2N2R A;  1C56 A;  2E0H A;  1ZVG A;  2KSK A;  2KBK A;  2B68 A;  1DJT A;  2LY5 A;  2E3F A;  1N4N A;  1KV0 A;  1PTX A;  1ZVE A;  4AB0 A;  1BMR A;  1I6G A;  2M8B B;  1NRA A;  2ATB A;  5KK4 A;  1OMY A;  1P0A A;  4HE7 A;  4UJ0 A;  2N69 A;  2KBH A;  2A7T A;  3E7R L;  5CY0 A;  2ASC A;  2LI7 A;  1JKZ A;  1SN4 A;  1T7B A;  1ZFU A;  1PX9 A;  2LR3 A;  1JXC A;  1MYN A;  1CHZ A;  1PE4 A;  1WMT A;  2MZ0 A;  2KJA A;  1CN2 A;  1SNB A;  1VNA A;  1AYJ A;  1NRB A;  2N66 A;  1SEG A;  1P00 A;  4HHF A;  2LY6 A;  1JZB A;  4AEI A;  1T7E A;  2LJM A;  1WT7 A;  1JZA A;  4CQK A;  1I2U A;  1NPI A;  2E3G A;  1BRZ A;  1I2V A;  2N2Q A;  2KPY A;  1ICA A;  1T7A A;  3PSM A;  1LQQ A;  1TI5 A;  1BCG A;  2YBR C;  1ZU3 A;  1T0Z A;  1ZYW A;  1GPS A;  3E7U X;  1ZYV A;  1I6F A;  2SN3 A;  2LT8 A;  1OZZ A;  1GPT A;  2LJ7 A;  4KYP A;  2KBJ A;  1SN1 A;  1C55 A;  2NY8 X;  1AHO A;  1MR4 A;  1T1T A;  1WWN A;  1NE5 A;  4V1D C;  2YC1 C;  4AAZ A;  2BRZ A;  1BK8 A;  1LQI A;  2B3C A;  2LKB A;  2NY9 X;  2KGQ A;  2YEO A;  2KYQ A;  1B3C A; 
#chains in the Genus database with same CATH topology
 1LQH A;  1NH5 A;  5AQV A;  1B7D A;  2MBK A;  1DQ7 A;  1L4V A;  3D2E A;  4H5T A;  3ATV A;  1FH3 A;  1ZUT A;  3JXU A;  1VNB A;  3QI7 A;  1NGF A;  2D56 A;  3D2E B;  1XRS B;  2E2F A;  2GL1 A;  5EVZ A;  2I61 A;  5EY4 A;  2QWO A;  1NGG A;  2YIP A;  1S3X A;  1NGC A;  2N2R A;  1C56 A;  2E0H A;  5BPL A;  1HPM A;  1ZVG A;  5EXW A;  2KSK A;  2KBK A;  5AQQ A;  5AR0 A;  2B68 A;  3I33 A;  1DJT A;  1KAX A;  1NGH A;  2LY5 A;  2E3F A;  1BA0 A;  1N4N A;  3KVG A;  1KV0 A;  3GDQ A;  3IUC A;  1YUW A;  5FPN A;  1PTX A;  1ZVE A;  4FSV A;  2V7Z A;  2YIL A;  5AQU A;  5AQY A;  5AQX A;  4AB0 A;  1BMR A;  1I6G A;  2M8B B;  1NRA A;  3L4I A;  5BPM A;  2ATB A;  5BN8 A;  4UAF E;  5FPD A;  5FPE A;  5KK4 A;  1ATR A;  1OMY A;  1P0A A;  1NGI A;  4HE7 A;  2YIO A;  4UJ0 A;  1NGB A;  3LDN A;  5BN9 A;  2N69 A;  4GNI A;  2KBH A;  2GMO A;  2QWQ A;  3GKU A;  3LDQ A;  3QML A;  2A7T A;  1B3C A;  3E7R L;  3KP0 A;  3FZK A;  4H5N A;  2QW9 A;  4H5W A;  3FZL A;  5AQT A;  5AQP A;  2K35 A;  5CY0 A;  3KP1 A;  1HJO A;  2ASC A;  2LI7 A;  3FZF A;  1JKZ A;  1SN4 A;  1T7B A;  1ZFU A;  2E8A A;  1PX9 A;  2LR3 A;  1JXC A;  3A8Y A;  3BK3 C;  3KOW A;  1K8B A;  5EX5 A;  1MYN A;  5FPM A;  5AQH A;  1CHZ A;  1PE4 A;  1WMT A;  3LDL A;  4FL9 A;  3FE1 A;  3KC6 A;  1HX1 A;  2MZ0 A;  4UAD E;  2KJA A;  5F1X A;  1CN2 A;  2QWR A;  5AQN A;  1SNB A;  2MN5 A;  1NGA A;  1VNA A;  3KOY A;  3SF4 D;  4UAE F;  1AYJ A;  1NRB A;  2N66 A;  1NGE A;  1SEG A;  1NGJ A;  1POI A;  1P00 A;  4HHF A;  2LY6 A;  3CW4 A;  1JZB A;  2G2K A;  4AEI A;  1T7E A;  1ATS A;  1UGL A;  3D2F A;  2E88 A;  2LJM A;  1WT7 A;  1NGD A;  2BUP A;  5F2R A;  1JZA A;  2VY6 A;  1KAY A;  3KHW A;  4CQK A;  1I2U A;  1NPI A;  3D2F B;  3L6Q A;  2E3G A;  3LDP A;  4IO8 A;  1BRZ A;  3L56 A;  1I2V A;  3C7N A;  1BUP A;  2N2Q A;  2KPY A;  5AQK A;  1ICA A;  1T7A A;  3CQX A;  1QQO A;  2QWP A;  3C7N B;  5AQG A;  3KOX A;  1LQQ A;  3PSM A;  1TI5 A;  4H5V A;  5AQL A;  2QXL A;  3LDO A;  1BCG A;  5AQM A;  2YBR C;  5F0X A;  1ZU3 A;  1T0Z A;  1ZYW A;  5BPN A;  3E7U X;  1ZYV A;  3R2V A;  1I6F A;  1GPS A;  2SN3 A;  3FZM A;  3ATU A;  3GL1 A;  3KOZ A;  3FZH A;  4HWI A;  3QFP A;  3AY9 A;  2LT8 A;  1OZZ A;  5AQW A;  1BA1 A;  1GPT A;  5AQS A;  1KAZ A;  5AQR A;  5AQO A;  1QQN A;  2LJ7 A;  4KYP A;  1QQM A;  2KBJ A;  5AQJ A;  2KHO A;  1SN1 A;  1C55 A;  2NY8 X;  3M3Z A;  1AHO A;  3HSC A;  1MR4 A;  1T1T A;  2JDQ D;  2QWM A;  2QWN A;  5AQI A;  1WWN A;  3QFU A;  1NE5 A;  2LN8 A;  4V1D C;  2YC1 C;  4AAZ A;  2BRZ A;  1BK8 A;  1DKG D;  2QWL A;  1LQI A;  5AQF A;  2B3C A;  2LKB A;  2NY9 X;  2KGQ A;  2YEO A;  4KBO A;  2KYQ A;  5AQZ A;  4H5R A; 
#chains in the Genus database with same CATH homology
 1LQH A;  1NH5 A;  1B7D A;  1DQ7 A;  1L4V A;  1FH3 A;  1ZUT A;  1VNB A;  2GL1 A;  2I61 A;  2N2R A;  1C56 A;  2E0H A;  1ZVG A;  2KSK A;  2KBK A;  2B68 A;  1DJT A;  2LY5 A;  2E3F A;  1N4N A;  1KV0 A;  1PTX A;  1ZVE A;  4AB0 A;  1BMR A;  1I6G A;  2M8B B;  1NRA A;  2ATB A;  5KK4 A;  1OMY A;  1P0A A;  4HE7 A;  4UJ0 A;  2N69 A;  2KBH A;  2A7T A;  3E7R L;  5CY0 A;  2ASC A;  2LI7 A;  1JKZ A;  1SN4 A;  1T7B A;  1ZFU A;  1PX9 A;  2LR3 A;  1JXC A;  1MYN A;  1CHZ A;  1PE4 A;  1WMT A;  2MZ0 A;  2KJA A;  1CN2 A;  1SNB A;  1VNA A;  1AYJ A;  1NRB A;  2N66 A;  1SEG A;  1P00 A;  4HHF A;  2LY6 A;  1JZB A;  4AEI A;  1T7E A;  2LJM A;  1WT7 A;  1JZA A;  4CQK A;  1I2U A;  1NPI A;  2E3G A;  1BRZ A;  1I2V A;  2N2Q A;  2KPY A;  1ICA A;  1T7A A;  3PSM A;  1LQQ A;  1TI5 A;  1BCG A;  2YBR C;  1ZU3 A;  1T0Z A;  1ZYW A;  1GPS A;  3E7U X;  1ZYV A;  1I6F A;  2SN3 A;  2LT8 A;  1OZZ A;  1GPT A;  2LJ7 A;  4KYP A;  2KBJ A;  1SN1 A;  1C55 A;  2NY8 X;  1AHO A;  1MR4 A;  1T1T A;  1WWN A;  1NE5 A;  4V1D C;  2YC1 C;  4AAZ A;  2BRZ A;  1BK8 A;  1LQI A;  2B3C A;  2LKB A;  2NY9 X;  2KGQ A;  2YEO A;  2KYQ A;  1B3C A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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