1ICAA

Refined three-dimensional structure of insect defensin a
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
40
structure length
40
Chain Sequence
ATCDLLSGTGINHSACAAHCLLRGNRGGYCNGKGVCVCRN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords INSECT DEFENSIN A
publication title Refined three-dimensional solution structure of insect defensin A.
pubmed doi rcsb
source organism Protophormia terraenovae
molecule tags Antibacterial protein
total genus 6
structure length 40
sequence length 40
ec nomenclature
pdb deposition date 1994-12-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01097 Defensin_2 Arthropod defensin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1icaA00
2N66A 4AAZA 1T0ZA 2KBKA 1NRAA 2ATBA 1DQ7A 5CY0A 1T1TA 1I2VA 1JXCA 1WT7A 1ZYVA 2LY6A 1N4NA 2GL1A 1SN1A 1C55A 1JZAA 2NY8X 1T7BA 1PTXA 1I2UA 1NPIA 2B3CA 2E0HA 1T7EA 2M8BB 1ZVGA 2KBJA 1PX9A 1SEGA 2N2QA 2YC1C 2SN3A 2I61A 1OZZA 4KYPA 1ZVEA 2N2RA 4UJ0A 2E3GA 1CN2A 1NH5A 2YEOA 4V1DC 2YBRC 1BRZA 1VNBA 1SNBA 3PSMA 1AYJA 1GPTA 4AEIA 1AHOA 1JZBA 2LI7A 2MZ0A 1P0AA 1WWNA 1KV0A 4HHFA 2LY5A 2E3FA 1MYNA 1L4VA 2KGQA 1BK8A 2A7TA 1ZFUA 2ASCA 3E7RL 2LT8A 1JKZA 1MR4A 4CQKA 1B3CA 1I6GA 1CHZA 1P00A 1ZYWA 2LJ7A 2LJMA 2LKBA 2KPYA 1I6FA 1C56A 1ZUTA 2N69A 2KYQA 1OMYA 1PE4A 1B7DA 1BMRA 1T7AA 1TI5A 4AB0A 2KSKA 1DJTA 1ICAA 3E7UX 2KBHA 2BRZA 1FH3A 1LQQA 2B68A 5KK4A 1BCGA 1LQIA 4HE7A 1SN4A 1WMTA 1ZU3A 1NRBA 2LR3A 1GPSA 2NY9X 1NE5A 2KJAA 1LQHA 1VNAA
chains in the Genus database with same CATH superfamily
4H5TA 5AQRA 2LN8A 2N66A 3QMLA 4AAZA 1T0ZA 1XRSB 2KBKA 1NRAA 5F1XA 2ATBA 2JDQD 4IO8A 1DQ7A 2QWRA 2K35A 5CY0A 1YUWA 1T1TA 3D2EB 3JXUA 1NGBA 2QWPA 1I2VA 1JXCA 3CW4A 1WT7A 1ZYVA 2LY6A 1N4NA 5AQYA 2GL1A 1SN1A 1NGAA 1C55A 1JZAA 2NY8X 5AQIA 1T7BA 1PTXA 3IUCA 5AQMA 5EXWA 1K8BA 1I2UA 1NPIA 1QQMA 2B3CA 2E2FA 2E0HA 2QWLA 1T7EA 1NGFA 2M8BB 1ZVGA 2KBJA 1PX9A 1SEGA 2N2QA 1QQOA 2YC1C 4H5RA 4UAEF 1BA1A 2SN3A 3LDQA 1HPMA 2I61A 3M3ZA 5AQTA 1OZZA 3ATVA 2GMOA 4KYPA 5AQSA 5BPMA 3BK3C 3GL1A 1NGDA 3I33A 4KBOA 1ZVEA 2E8AA 2N2RA 3C7NB 2QWNA 3HSCA 3D2FB 5F2RA 2E3GA 4UJ0A 3GKUA 5AQNA 4UAFE 5AQOA 1NGIA 1CN2A 1NH5A 2YEOA 4V1DC 2YBRC 1NGEA 3KC6A 3KOYA 5FPEA 1ATSA 1BRZA 3QI7A 1ATRA 1VNBA 1NGJA 5AQFA 1SNBA 3FZFA 3KOZA 3PSMA 5BN8A 1AYJA 4AEIA 1GPTA 4GNIA 2VY6A 3L56A 1BUPA 3LDPA 4HWIA 5AQVA 1AHOA 1JZBA 1POIA 2LI7A 5EX5A 2MZ0A 2QWQA 5FPNA 1P0AA 5F0XA 1HX1A 1S3XA 1WWNA 1KV0A 2YIPA 3KOWA 3KHWA 2LY5A 3R2VA 4HHFA 2E3FA 1MYNA 3A8YA 3LDNA 3FZLA 1L4VA 2KGQA 1BK8A 2QXLA 2A7TA 5AQLA 3SF4D 2QWMA 5BPNA 1KAZA 1ZFUA 2ASCA 1DKGD 3E7RL 3KP1A 4FSVA 3QFUA 5AQJA 2LT8A 5AQUA 1JKZA 1KAXA 1MR4A 4CQKA 3FZMA 1B3CA 1CHZA 1P00A 1I6GA 3FE1A 4FL9A 3QFPA 1ZYWA 3D2EA 1UGLA 5AQPA 5AQGA 1KAYA 2BUPA 2LJ7A 4UADE 2G2KA 3KP0A 2LJMA 2LKBA 4H5NA 2KPYA 1I6FA 1NGCA 3AY9A 1C56A 5EY4A 2KHOA 2YIOA 1ZUTA 2YILA 2N69A 5AQHA 2KYQA 5BN9A 4H5WA 5BPLA 2D56A 2QWOA 1OMYA 1PE4A 1B7DA 2MN5A 3KOXA 1T7AA 1TI5A 5AQKA 5AR0A 2KSKA 1DJTA 4AB0A 1BMRA 5AQQA 1ICAA 3E7UX 4H5VA 2KBHA 2BRZA 3C7NA 1FH3A 3D2FA 5AQXA 1LQQA 2B68A 5KK4A 1BCGA 1LQIA 1NGGA 3FZHA 4HE7A 3KVGA 5FPDA 2V7ZA 3ATUA 3L4IA 1BA0A 1SN4A 2MBKA 5AQWA 1WMTA 1ZU3A 3LDOA 5EVZA 3LDLA 1NRBA 2E88A 2LR3A 3L6QA 3FZKA 1GPSA 2NY9X 1NE5A 1NGHA 5FPMA 1HJOA 5AQZA 2KJAA 1LQHA 1VNAA 1QQNA 3CQXA 2QW9A 3GDQA
chains in the Genus database with same CATH topology
2N66A 4AAZA 1T0ZA 2KBKA 1NRAA 2ATBA 1DQ7A 5CY0A 1T1TA 1I2VA 1JXCA 1WT7A 1ZYVA 2LY6A 1N4NA 2GL1A 1SN1A 1C55A 1JZAA 2NY8X 1T7BA 1PTXA 1I2UA 1NPIA 2B3CA 2E0HA 1T7EA 2M8BB 1ZVGA 2KBJA 1PX9A 1SEGA 2N2QA 2YC1C 2SN3A 2I61A 1OZZA 4KYPA 1ZVEA 2N2RA 4UJ0A 2E3GA 1CN2A 1NH5A 2YEOA 4V1DC 2YBRC 1BRZA 1VNBA 1SNBA 3PSMA 1AYJA 1GPTA 4AEIA 1AHOA 1JZBA 2LI7A 2MZ0A 1P0AA 1WWNA 1KV0A 4HHFA 2LY5A 2E3FA 1MYNA 1L4VA 2KGQA 1BK8A 2A7TA 1ZFUA 2ASCA 3E7RL 2LT8A 1JKZA 1MR4A 4CQKA 1B3CA 1I6GA 1CHZA 1P00A 1ZYWA 2LJ7A 2LJMA 2LKBA 2KPYA 1I6FA 1C56A 1ZUTA 2N69A 2KYQA 1OMYA 1PE4A 1B7DA 1BMRA 1T7AA 1TI5A 4AB0A 2KSKA 1DJTA 1ICAA 3E7UX 2KBHA 2BRZA 1FH3A 1LQQA 2B68A 5KK4A 1BCGA 1LQIA 4HE7A 1SN4A 1WMTA 1ZU3A 1NRBA 2LR3A 1GPSA 2NY9X 1NE5A 2KJAA 1LQHA 1VNAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2N66 A;  4AAZ A;  1T0Z A;  2KBK A;  1NRA A;  2ATB A;  1DQ7 A;  5CY0 A;  1T1T A;  1I2V A;  1JXC A;  1WT7 A;  1ZYV A;  2LY6 A;  1N4N A;  2GL1 A;  1SN1 A;  1C55 A;  1JZA A;  2NY8 X;  1T7B A;  1PTX A;  1I2U A;  1NPI A;  2B3C A;  2E0H A;  1T7E A;  2M8B B;  1ZVG A;  2KBJ A;  1PX9 A;  1SEG A;  2N2Q A;  2YC1 C;  2SN3 A;  2I61 A;  1OZZ A;  4KYP A;  1ZVE A;  2N2R A;  4UJ0 A;  2E3G A;  1CN2 A;  1NH5 A;  2YEO A;  4V1D C;  2YBR C;  1BRZ A;  1VNB A;  1SNB A;  3PSM A;  1AYJ A;  1GPT A;  4AEI A;  1AHO A;  1JZB A;  2LI7 A;  2MZ0 A;  1P0A A;  1WWN A;  1KV0 A;  4HHF A;  2LY5 A;  2E3F A;  1MYN A;  1L4V A;  2KGQ A;  1BK8 A;  2A7T A;  1ZFU A;  2ASC A;  3E7R L;  2LT8 A;  1JKZ A;  1MR4 A;  4CQK A;  1B3C A;  1I6G A;  1CHZ A;  1P00 A;  1ZYW A;  2LJ7 A;  2LJM A;  2LKB A;  2KPY A;  1I6F A;  1C56 A;  1ZUT A;  2N69 A;  2KYQ A;  1OMY A;  1PE4 A;  1B7D A;  1BMR A;  1T7A A;  1TI5 A;  4AB0 A;  2KSK A;  1DJT A;  1ICA A;  3E7U X;  2KBH A;  2BRZ A;  1FH3 A;  1LQQ A;  2B68 A;  5KK4 A;  1BCG A;  1LQI A;  4HE7 A;  1SN4 A;  1WMT A;  1ZU3 A;  1NRB A;  2LR3 A;  1GPS A;  2NY9 X;  1NE5 A;  2KJA A;  1LQH A;  1VNA A; 
#chains in the Genus database with same CATH topology
 4H5T A;  5AQR A;  2LN8 A;  2N66 A;  3QML A;  4AAZ A;  1T0Z A;  1XRS B;  2KBK A;  1NRA A;  5F1X A;  2ATB A;  2JDQ D;  4IO8 A;  1DQ7 A;  2QWR A;  2K35 A;  5CY0 A;  1YUW A;  1T1T A;  3D2E B;  3JXU A;  1NGB A;  2QWP A;  1I2V A;  1JXC A;  3CW4 A;  1WT7 A;  1ZYV A;  2LY6 A;  1N4N A;  5AQY A;  2GL1 A;  1SN1 A;  1NGA A;  1C55 A;  1JZA A;  2NY8 X;  5AQI A;  1T7B A;  1PTX A;  3IUC A;  5AQM A;  5EXW A;  1K8B A;  1I2U A;  1NPI A;  1QQM A;  2B3C A;  2E2F A;  2E0H A;  2QWL A;  1T7E A;  1NGF A;  2M8B B;  1ZVG A;  2KBJ A;  1PX9 A;  1SEG A;  2N2Q A;  1QQO A;  2YC1 C;  4H5R A;  4UAE F;  1BA1 A;  2SN3 A;  3LDQ A;  1HPM A;  2I61 A;  3M3Z A;  5AQT A;  1OZZ A;  3ATV A;  2GMO A;  4KYP A;  5AQS A;  5BPM A;  3BK3 C;  3GL1 A;  1NGD A;  3I33 A;  4KBO A;  1ZVE A;  2E8A A;  2N2R A;  3C7N B;  2QWN A;  3HSC A;  3D2F B;  5F2R A;  2E3G A;  4UJ0 A;  3GKU A;  5AQN A;  4UAF E;  5AQO A;  1NGI A;  1CN2 A;  1NH5 A;  2YEO A;  4V1D C;  2YBR C;  1NGE A;  3KC6 A;  3KOY A;  5FPE A;  1ATS A;  1BRZ A;  3QI7 A;  1ATR A;  1VNB A;  1NGJ A;  5AQF A;  1SNB A;  3FZF A;  3KOZ A;  3PSM A;  5BN8 A;  1AYJ A;  4AEI A;  1GPT A;  4GNI A;  2VY6 A;  3L56 A;  1BUP A;  3LDP A;  4HWI A;  5AQV A;  1AHO A;  1JZB A;  1POI A;  2LI7 A;  5EX5 A;  2MZ0 A;  2QWQ A;  5FPN A;  1P0A A;  5F0X A;  1HX1 A;  1S3X A;  1WWN A;  1KV0 A;  2YIP A;  3KOW A;  3KHW A;  2LY5 A;  3R2V A;  4HHF A;  2E3F A;  1MYN A;  3A8Y A;  3LDN A;  3FZL A;  1L4V A;  2KGQ A;  1BK8 A;  2QXL A;  2A7T A;  5AQL A;  3SF4 D;  2QWM A;  5BPN A;  1KAZ A;  1ZFU A;  2ASC A;  1DKG D;  3E7R L;  3KP1 A;  4FSV A;  3QFU A;  5AQJ A;  2LT8 A;  5AQU A;  1JKZ A;  1KAX A;  1MR4 A;  4CQK A;  3FZM A;  1B3C A;  1CHZ A;  1P00 A;  1I6G A;  3FE1 A;  4FL9 A;  3QFP A;  1ZYW A;  3D2E A;  1UGL A;  5AQP A;  5AQG A;  1KAY A;  2BUP A;  2LJ7 A;  4UAD E;  2G2K A;  3KP0 A;  2LJM A;  2LKB A;  4H5N A;  2KPY A;  1I6F A;  1NGC A;  3AY9 A;  1C56 A;  5EY4 A;  2KHO A;  2YIO A;  1ZUT A;  2YIL A;  2N69 A;  5AQH A;  2KYQ A;  5BN9 A;  4H5W A;  5BPL A;  2D56 A;  2QWO A;  1OMY A;  1PE4 A;  1B7D A;  2MN5 A;  3KOX A;  1T7A A;  1TI5 A;  5AQK A;  5AR0 A;  2KSK A;  1DJT A;  4AB0 A;  1BMR A;  5AQQ A;  1ICA A;  3E7U X;  4H5V A;  2KBH A;  2BRZ A;  3C7N A;  1FH3 A;  3D2F A;  5AQX A;  1LQQ A;  2B68 A;  5KK4 A;  1BCG A;  1LQI A;  1NGG A;  3FZH A;  4HE7 A;  3KVG A;  5FPD A;  2V7Z A;  3ATU A;  3L4I A;  1BA0 A;  1SN4 A;  2MBK A;  5AQW A;  1WMT A;  1ZU3 A;  3LDO A;  5EVZ A;  3LDL A;  1NRB A;  2E88 A;  2LR3 A;  3L6Q A;  3FZK A;  1GPS A;  2NY9 X;  1NE5 A;  1NGH A;  5FPM A;  1HJO A;  5AQZ A;  2KJA A;  1LQH A;  1VNA A;  1QQN A;  3CQX A;  2QW9 A;  3GDQ A; 
#chains in the Genus database with same CATH homology
 2N66 A;  4AAZ A;  1T0Z A;  2KBK A;  1NRA A;  2ATB A;  1DQ7 A;  5CY0 A;  1T1T A;  1I2V A;  1JXC A;  1WT7 A;  1ZYV A;  2LY6 A;  1N4N A;  2GL1 A;  1SN1 A;  1C55 A;  1JZA A;  2NY8 X;  1T7B A;  1PTX A;  1I2U A;  1NPI A;  2B3C A;  2E0H A;  1T7E A;  2M8B B;  1ZVG A;  2KBJ A;  1PX9 A;  1SEG A;  2N2Q A;  2YC1 C;  2SN3 A;  2I61 A;  1OZZ A;  4KYP A;  1ZVE A;  2N2R A;  4UJ0 A;  2E3G A;  1CN2 A;  1NH5 A;  2YEO A;  4V1D C;  2YBR C;  1BRZ A;  1VNB A;  1SNB A;  3PSM A;  1AYJ A;  1GPT A;  4AEI A;  1AHO A;  1JZB A;  2LI7 A;  2MZ0 A;  1P0A A;  1WWN A;  1KV0 A;  4HHF A;  2LY5 A;  2E3F A;  1MYN A;  1L4V A;  2KGQ A;  1BK8 A;  2A7T A;  1ZFU A;  2ASC A;  3E7R L;  2LT8 A;  1JKZ A;  1MR4 A;  4CQK A;  1B3C A;  1I6G A;  1CHZ A;  1P00 A;  1ZYW A;  2LJ7 A;  2LJM A;  2LKB A;  2KPY A;  1I6F A;  1C56 A;  1ZUT A;  2N69 A;  2KYQ A;  1OMY A;  1PE4 A;  1B7D A;  1BMR A;  1T7A A;  1TI5 A;  4AB0 A;  2KSK A;  1DJT A;  1ICA A;  3E7U X;  2KBH A;  2BRZ A;  1FH3 A;  1LQQ A;  2B68 A;  5KK4 A;  1BCG A;  1LQI A;  4HE7 A;  1SN4 A;  1WMT A;  1ZU3 A;  1NRB A;  2LR3 A;  1GPS A;  2NY9 X;  1NE5 A;  2KJA A;  1LQH A;  1VNA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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