3L56A

Crystal structure of the large c-terminal domain of polymerase basic protein 2 from influenza virus a/viet nam/1203/2004 (h5n1)
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
202
structure length
194
Chain Sequence
NGPESVLVNTYQWIIRNWETVKIQWSQDPTMLYNKMEFEPFQSLVPKAARGQYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPKQSRMQFSSLTVNVRGSGMRILVRGNSPVFNYNKATKRLTVLGKDAGALTGVESAVLRGFLILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRDS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Biological and structural characterization of a host-adapting amino acid in influenza virus.
pubmed doi rcsb
molecule tags Viral protein
source organism Influenza a virus
molecule keywords Polymerase PB2
total genus 51
structure length 194
sequence length 202
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-12-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.90 Alpha Beta 2-Layer Sandwich Defensin A-like Defensin A-like 3l56A02
4UAEF 3CW4A 3KHWA 2VY6A 2JDQD 2GMOA 3KC6A 4UADE 4UAFE 3L56A 3R2VA
chains in the Genus database with same CATH superfamily
3KOWA 5AQPA 3KP1A 3GDQA 1P00A 4AB0A 1SNBA 1XRSB 1QQNA 2LY6A 1I6FA 5BN8A 5BPMA 5F1XA 3L56A 5F2RA 1VNAA 2KJAA 1BA1A 2E3FA 1NE5A 1SN1A 4H5RA 3QFUA 1NGHA 2KYQA 3ATVA 2QWNA 1JZBA 1JXCA 3FZHA 1ATRA 1N4NA 3FZKA 1ICAA 2D56A 4H5VA 1HJOA 2QWOA 2QWRA 3CW4A 1DKGD 4GNIA 1K8BA 1ZFUA 2LI7A 2LJ7A 4H5NA 1QQMA 4HE7A 3L4IA 1YUWA 2NY9X 2KBKA 4AAZA 2N66A 3KOZA 2MBKA 4HHFA 4UADE 5F0XA 5AQQA 5AQWA 1KAYA 1NGFA 2QW9A 5AQTA 2KHOA 3GKUA 2E8AA 1PX9A 1T1TA 2LN8A 2MZ0A 1PE4A 2YEOA 5EY4A 2B68A 1BMRA 5AQHA 3A8YA 5AQSA 3LDNA 5KK4A 1MR4A 3KP0A 2GMOA 2KGQA 2YC1C 5EXWA 4KYPA 2E0HA 5EVZA 3M3ZA 5BPNA 2N2QA 1SN4A 2LKBA 2LY5A 1GPTA 1MYNA 3HSCA 1GPSA 1NGIA 1NGJA 1ZVGA 1WWNA 2LR3A 1PTXA 2K35A 4FL9A 5AQVA 5CY0A 1I2VA 1L4VA 1ZYWA 1ATSA 2KSKA 3KVGA 2NY8X 3D2EB 3LDLA 1KV0A 3L6QA 1ZYVA 1NGBA 1S3XA 4IO8A 1HPMA 3KHWA 3LDQA 1AHOA 3LDPA 5BN9A 2GL1A 2E88A 4FSVA 5AQFA 2QXLA 5FPEA 2YBRC 2E2FA 2V7ZA 4V1DC 1CHZA 1TI5A 1ZU3A 2QWPA 2E3GA 2YIPA 3BK3C 1SEGA 3JXUA 1NRAA 2KPYA 3LDOA 3QI7A 1BA0A 5AQKA 5FPNA 2B3CA 1LQHA 1NH5A 1WMTA 2G2KA 3ATUA 5AQOA 3FZLA 3E7RL 3IUCA 1C55A 2ATBA 1NGGA 2KBJA 3CQXA 2N69A 3KOXA 1BRZA 3D2FB 1KAZA 1I2UA 1JZAA 3QFPA 1LQIA 2QWMA 3AY9A 5AQZA 1BCGA 3KOYA 1BUPA 2BUPA 3SF4D 4AEIA 2QWQA 1OZZA 4CQKA 3R2VA 1QQOA 3E7UX 2I61A 5AQIA 1NGDA 2YILA 2LJMA 1BK8A 2JDQD 3I33A 1AYJA 3FE1A 5AQLA 5AQUA 3C7NB 2ASCA 1NPIA 2YIOA 1NRBA 3PSMA 5AR0A 5FPDA 5AQMA 1CN2A 2SN3A 2VY6A 3FZFA 1DJTA 5AQGA 1ZVEA 5AQYA 2KBHA 1I6GA 5EX5A 1UGLA 3D2FA 1B7DA 4H5WA 4HWIA 1DQ7A 1WT7A 5AQRA 4UAFE 3QMLA 1FH3A 1NGAA 2M8BB 2N2RA 1OMYA 2QWLA 4UJ0A 4UAEF 1T7EA 5AQNA 5AQXA 2A7TA 3D2EA 5AQJA 1ZUTA 2BRZA 1NGEA 1C56A 3GL1A 1T0ZA 2LT8A 4KBOA 3FZMA 3C7NA 5BPLA 1POIA 1HX1A 4H5TA 5FPMA 1NGCA 1T7AA 1VNBA 3KC6A 1JKZA 1B3CA 1P0AA 2MN5A 1T7BA 1KAXA 1LQQA
chains in the Genus database with same CATH topology
5AQPA 3GDQA 5BPMA 1QQNA 5BN8A 5F1XA 3L56A 5F2RA 1BA1A 4H5RA 1NGHA 3ATVA 2QWNA 3FZHA 1ATRA 3FZKA 2D56A 4H5VA 1HJOA 2QWOA 2QWRA 3CW4A 1DKGD 4GNIA 4H5NA 1QQMA 3L4IA 1YUWA 2MBKA 4UADE 5F0XA 5AQQA 5AQWA 1KAYA 1NGFA 2QW9A 5AQTA 2KHOA 2E8AA 2LN8A 5EY4A 5AQHA 3A8YA 5AQSA 3LDNA 2GMOA 5EXWA 5BPNA 5EVZA 3M3ZA 3HSCA 1NGIA 1NGJA 4FL9A 2K35A 5AQVA 1ATSA 3KVGA 3D2EB 3LDLA 3L6QA 1NGBA 1S3XA 4IO8A 1HPMA 3KHWA 3LDQA 3LDPA 5BN9A 2E88A 4FSVA 5AQFA 2QXLA 5FPEA 2E2FA 2V7ZA 3BK3C 2QWPA 2YIPA 3JXUA 3LDOA 3QI7A 5AQKA 5FPNA 1BA0A 3ATUA 5AQOA 3FZLA 3IUCA 1NGGA 3CQXA 3D2FB 1KAZA 3QFPA 2QWMA 3AY9A 5AQZA 1BUPA 2BUPA 3SF4D 2QWQA 3R2VA 1QQOA 5AQIA 1NGDA 2YILA 2JDQD 3I33A 3FE1A 5AQLA 5AQUA 3C7NB 2YIOA 5AR0A 5FPDA 5AQMA 2VY6A 3FZFA 5AQGA 5AQYA 5EX5A 3D2FA 4H5WA 4HWIA 5AQRA 4UAFE 3QMLA 1NGAA 2QWLA 4UAEF 5AQNA 5AQXA 3D2EA 5AQJA 1NGEA 3GL1A 4KBOA 3FZMA 3C7NA 5BPLA 1POIA 1HX1A 4H5TA 5FPMA 1NGCA 3KC6A 2MN5A 1KAXA 3QFUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UAE F;  3CW4 A;  3KHW A;  2VY6 A;  2JDQ D;  2GMO A;  3KC6 A;  4UAD E;  4UAF E;  3L56 A;  3R2V A; 
#chains in the Genus database with same CATH topology
 3KOW A;  5AQP A;  3KP1 A;  3GDQ A;  1P00 A;  4AB0 A;  1SNB A;  1XRS B;  1QQN A;  2LY6 A;  1I6F A;  5BN8 A;  5BPM A;  5F1X A;  3L56 A;  5F2R A;  1VNA A;  2KJA A;  1BA1 A;  2E3F A;  1NE5 A;  1SN1 A;  4H5R A;  3QFU A;  1NGH A;  2KYQ A;  3ATV A;  2QWN A;  1JZB A;  1JXC A;  3FZH A;  1ATR A;  1N4N A;  3FZK A;  1ICA A;  2D56 A;  4H5V A;  1HJO A;  2QWO A;  2QWR A;  3CW4 A;  1DKG D;  4GNI A;  1K8B A;  1ZFU A;  2LI7 A;  2LJ7 A;  4H5N A;  1QQM A;  4HE7 A;  3L4I A;  1YUW A;  2NY9 X;  2KBK A;  4AAZ A;  2N66 A;  3KOZ A;  2MBK A;  4HHF A;  4UAD E;  5F0X A;  5AQQ A;  5AQW A;  1KAY A;  1NGF A;  2QW9 A;  5AQT A;  2KHO A;  3GKU A;  2E8A A;  1PX9 A;  1T1T A;  2LN8 A;  2MZ0 A;  1PE4 A;  2YEO A;  5EY4 A;  2B68 A;  1BMR A;  5AQH A;  3A8Y A;  5AQS A;  3LDN A;  5KK4 A;  1MR4 A;  3KP0 A;  2GMO A;  2KGQ A;  2YC1 C;  5EXW A;  4KYP A;  2E0H A;  5EVZ A;  3M3Z A;  5BPN A;  2N2Q A;  1SN4 A;  2LKB A;  2LY5 A;  1GPT A;  1MYN A;  3HSC A;  1GPS A;  1NGI A;  1NGJ A;  1ZVG A;  1WWN A;  2LR3 A;  1PTX A;  2K35 A;  4FL9 A;  5AQV A;  5CY0 A;  1I2V A;  1L4V A;  1ZYW A;  1ATS A;  2KSK A;  3KVG A;  2NY8 X;  3D2E B;  3LDL A;  1KV0 A;  3L6Q A;  1ZYV A;  1NGB A;  1S3X A;  4IO8 A;  1HPM A;  3KHW A;  3LDQ A;  1AHO A;  3LDP A;  5BN9 A;  2GL1 A;  2E88 A;  4FSV A;  5AQF A;  2QXL A;  5FPE A;  2YBR C;  2E2F A;  2V7Z A;  4V1D C;  1CHZ A;  1TI5 A;  1ZU3 A;  2QWP A;  2E3G A;  2YIP A;  3BK3 C;  1SEG A;  3JXU A;  1NRA A;  2KPY A;  3LDO A;  3QI7 A;  1BA0 A;  5AQK A;  5FPN A;  2B3C A;  1LQH A;  1NH5 A;  1WMT A;  2G2K A;  3ATU A;  5AQO A;  3FZL A;  3E7R L;  3IUC A;  1C55 A;  2ATB A;  1NGG A;  2KBJ A;  3CQX A;  2N69 A;  3KOX A;  1BRZ A;  3D2F B;  1KAZ A;  1I2U A;  1JZA A;  3QFP A;  1LQI A;  2QWM A;  3AY9 A;  5AQZ A;  1BCG A;  3KOY A;  1BUP A;  2BUP A;  3SF4 D;  4AEI A;  2QWQ A;  1OZZ A;  4CQK A;  3R2V A;  1QQO A;  3E7U X;  2I61 A;  5AQI A;  1NGD A;  2YIL A;  2LJM A;  1BK8 A;  2JDQ D;  3I33 A;  1AYJ A;  3FE1 A;  5AQL A;  5AQU A;  3C7N B;  2ASC A;  1NPI A;  2YIO A;  1NRB A;  3PSM A;  5AR0 A;  5FPD A;  5AQM A;  1CN2 A;  2SN3 A;  2VY6 A;  3FZF A;  1DJT A;  5AQG A;  1ZVE A;  5AQY A;  2KBH A;  1I6G A;  5EX5 A;  1UGL A;  3D2F A;  1B7D A;  4H5W A;  4HWI A;  1DQ7 A;  1WT7 A;  5AQR A;  4UAF E;  3QML A;  1FH3 A;  1NGA A;  2M8B B;  2N2R A;  1OMY A;  2QWL A;  4UJ0 A;  4UAE F;  1T7E A;  5AQN A;  5AQX A;  2A7T A;  3D2E A;  5AQJ A;  1ZUT A;  2BRZ A;  1NGE A;  1C56 A;  3GL1 A;  1T0Z A;  2LT8 A;  4KBO A;  3FZM A;  3C7N A;  5BPL A;  1POI A;  1HX1 A;  4H5T A;  5FPM A;  1NGC A;  1T7A A;  1VNB A;  3KC6 A;  1JKZ A;  1B3C A;  1P0A A;  2MN5 A;  1T7B A;  1KAX A;  1LQQ A; 
#chains in the Genus database with same CATH homology
 5AQP A;  3GDQ A;  5BPM A;  1QQN A;  5BN8 A;  5F1X A;  3L56 A;  5F2R A;  1BA1 A;  4H5R A;  1NGH A;  3ATV A;  2QWN A;  3FZH A;  1ATR A;  3FZK A;  2D56 A;  4H5V A;  1HJO A;  2QWO A;  2QWR A;  3CW4 A;  1DKG D;  4GNI A;  4H5N A;  1QQM A;  3L4I A;  1YUW A;  2MBK A;  4UAD E;  5F0X A;  5AQQ A;  5AQW A;  1KAY A;  1NGF A;  2QW9 A;  5AQT A;  2KHO A;  2E8A A;  2LN8 A;  5EY4 A;  5AQH A;  3A8Y A;  5AQS A;  3LDN A;  2GMO A;  5EXW A;  5BPN A;  5EVZ A;  3M3Z A;  3HSC A;  1NGI A;  1NGJ A;  4FL9 A;  2K35 A;  5AQV A;  1ATS A;  3KVG A;  3D2E B;  3LDL A;  3L6Q A;  1NGB A;  1S3X A;  4IO8 A;  1HPM A;  3KHW A;  3LDQ A;  3LDP A;  5BN9 A;  2E88 A;  4FSV A;  5AQF A;  2QXL A;  5FPE A;  2E2F A;  2V7Z A;  3BK3 C;  2QWP A;  2YIP A;  3JXU A;  3LDO A;  3QI7 A;  5AQK A;  5FPN A;  1BA0 A;  3ATU A;  5AQO A;  3FZL A;  3IUC A;  1NGG A;  3CQX A;  3D2F B;  1KAZ A;  3QFP A;  2QWM A;  3AY9 A;  5AQZ A;  1BUP A;  2BUP A;  3SF4 D;  2QWQ A;  3R2V A;  1QQO A;  5AQI A;  1NGD A;  2YIL A;  2JDQ D;  3I33 A;  3FE1 A;  5AQL A;  5AQU A;  3C7N B;  2YIO A;  5AR0 A;  5FPD A;  5AQM A;  2VY6 A;  3FZF A;  5AQG A;  5AQY A;  5EX5 A;  3D2F A;  4H5W A;  4HWI A;  5AQR A;  4UAF E;  3QML A;  1NGA A;  2QWL A;  4UAE F;  5AQN A;  5AQX A;  3D2E A;  5AQJ A;  1NGE A;  3GL1 A;  4KBO A;  3FZM A;  3C7N A;  5BPL A;  1POI A;  1HX1 A;  4H5T A;  5FPM A;  1NGC A;  3KC6 A;  2MN5 A;  1KAX A;  3QFU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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