1MR4A

Solution structure of nad1 from nicotiana alata
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
47
structure length
47
Chain Sequence
RECKTESNTFPGICITKPPCRKACISEKFTDGHCSKILRRCLCTKPC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Plant protein
publication title The Three-dimensional Solution Structure of NaD1, a New Floral Defensin from Nicotiana alata and its Application to a Homology Model of the Crop Defense Protein alfAFP
pubmed doi rcsb
molecule keywords Nicotiana alata plant defensin 1 (NaD1)
total genus 10
structure length 47
sequence length 47
ec nomenclature
pdb deposition date 2002-09-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00304 Gamma-thionin Gamma-thionin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1mr4A00
1ZUTA 1C56A 1VNBA 1L4VA 1T7EA 2KSKA 2SN3A 1CN2A 2KBHA 2LJMA 5CY0A 1OMYA 1LQHA 2NY8X 1TI5A 1BRZA 1I2UA 2KJAA 1ZYWA 2N66A 2NY9X 1MR4A 1NH5A 2M8BB 1PX9A 1JZBA 1PTXA 1NPIA 1CHZA 1B3CA 2YEOA 2LY6A 1I6GA 1FH3A 2ATBA 2YC1C 1BMRA 1LQQA 1T1TA 4AAZA 2B68A 1ZVGA 1WT7A 1WWNA 1GPTA 1N4NA 1KV0A 3E7RL 2LR3A 1WMTA 1T7AA 1AYJA 1JZAA 1ZVEA 2GL1A 1NRAA 1DJTA 1ZYVA 2LI7A 4AEIA 1SEGA 2ASCA 1VNAA 2MZ0A 1P0AA 1OZZA 4CQKA 2KYQA 4HE7A 1I6FA 1MYNA 2KGQA 1PE4A 1ICAA 1ZU3A 1GPSA 1P00A 2KBJA 2B3CA 2I61A 4HHFA 2E3FA 2BRZA 2E3GA 1AHOA 2YBRC 1ZFUA 3E7UX 2KBKA 1T0ZA 2KPYA 1BCGA 1SN4A 2N69A 1I2VA 1SN1A 1BK8A 1C55A 2LKBA 2LJ7A 4V1DC 3PSMA 1DQ7A 4UJ0A 1B7DA 1SNBA 1NRBA 1JXCA 1T7BA 1JKZA 2LY5A 2N2QA 2LT8A 4AB0A 2E0HA 1LQIA 2A7TA 5KK4A 4KYPA 2N2RA 1NE5A
chains in the Genus database with same CATH superfamily
2BUPA 5F2RA 1ZUTA 3I33A 5BN8A 1C56A 1VNBA 1KAYA 1L4VA 1T7EA 1NGAA 2KSKA 3R2VA 2SN3A 2VY6A 3GDQA 1CN2A 3GKUA 2KBHA 4UADE 3D2EA 1HX1A 3LDPA 5BPNA 2LJMA 5CY0A 1OMYA 3FZMA 1LQHA 2NY8X 5AQJA 2GMOA 2QW9A 3C7NA 1TI5A 4UAEF 1BRZA 4H5VA 2JDQD 2KJAA 4FL9A 3CQXA 1I2UA 1ZYWA 2E2FA 2N66A 4H5RA 2V7ZA 2NY9X 1NGCA 1MR4A 2QWRA 3KOWA 1NH5A 2E88A 3KHWA 1NGFA 3SF4D 5AQWA 1NGDA 2M8BB 1PX9A 2YIPA 5EVZA 1NGHA 3IUCA 1JZBA 1ATRA 1PTXA 1NPIA 1CHZA 1B3CA 2YEOA 3FE1A 2LY6A 3BK3C 3LDNA 1FH3A 1I6GA 2ATBA 3M3ZA 2YC1C 2E8AA 1BMRA 1LQQA 1T1TA 4AAZA 2QWLA 2QWQA 4KBOA 5AQKA 3FZLA 4IO8A 2B68A 1ZVGA 2LN8A 3A8YA 1WT7A 1WWNA 5AR0A 1N4NA 1KV0A 1GPTA 2D56A 2KHOA 3CW4A 3D2FB 3E7RL 3LDOA 2LR3A 5AQGA 2MBKA 3KP0A 1WMTA 3L6QA 3ATVA 5AQPA 1QQOA 1T7AA 1HJOA 1AYJA 1JZAA 1BUPA 2QWNA 2MN5A 3QMLA 1ZVEA 5AQUA 2G2KA 5EY4A 3FZFA 5AQZA 1K8BA 3KOXA 2GL1A 5AQRA 1S3XA 1NRAA 3KVGA 3LDLA 5FPMA 5AQMA 1DJTA 1ZYVA 5AQVA 5EX5A 3L56A 2LI7A 2QWPA 1HPMA 3FZHA 5AQIA 4AEIA 1SEGA 5BPLA 2ASCA 4H5WA 1VNAA 5EXWA 3FZKA 2MZ0A 1P0AA 1OZZA 3C7NB 4CQKA 5BPMA 2KYQA 4HE7A 3KC6A 1I6FA 1MYNA 2KGQA 1NGGA 1PE4A 1QQNA 1ICAA 5BN9A 5AQFA 1ZU3A 1GPSA 1KAXA 1P00A 3ATUA 3L4IA 2KBJA 1QQMA 5AQHA 2B3CA 2I61A 1YUWA 4HHFA 2E3FA 2BRZA 1NGIA 2E3GA 1AHOA 2YBRC 1ZFUA 3E7UX 3QI7A 1BA1A 3QFUA 2KBKA 1T0ZA 2KPYA 1BCGA 1DKGD 5F0XA 1SN4A 2N69A 1ATSA 3KOYA 1I2VA 3KP1A 4H5NA 5AQLA 2K35A 1KAZA 1SN1A 3D2EB 2YILA 4UAFE 1BK8A 3KOZA 1C55A 3GL1A 3JXUA 2LKBA 1BA0A 2LJ7A 4V1DC 5AQYA 5AQXA 5F1XA 2QWMA 5AQOA 3PSMA 4KYPA 3HSCA 1DQ7A 1POIA 4UJ0A 1B7DA 1SNBA 1NGBA 1NRBA 1JXCA 1T7BA 2QWOA 2QXLA 2YIOA 1JKZA 1UGLA 2LY5A 2N2QA 3LDQA 4HWIA 5FPEA 4GNIA 2LT8A 4FSVA 5AQQA 4AB0A 2E0HA 3QFPA 3D2FA 5AQNA 3AY9A 5FPNA 5AQTA 5AQSA 1LQIA 1XRSB 2A7TA 4H5TA 5KK4A 1NGEA 1NGJA 2N2RA 1NE5A 5FPDA
chains in the Genus database with same CATH topology
1ZUTA 1C56A 1VNBA 1L4VA 1T7EA 2KSKA 2SN3A 1CN2A 2KBHA 2LJMA 5CY0A 1OMYA 1LQHA 2NY8X 1TI5A 1BRZA 1I2UA 2KJAA 1ZYWA 2N66A 2NY9X 1MR4A 1NH5A 2M8BB 1PX9A 1JZBA 1PTXA 1NPIA 1CHZA 1B3CA 2YEOA 2LY6A 1I6GA 1FH3A 2ATBA 2YC1C 1BMRA 1LQQA 1T1TA 4AAZA 2B68A 1ZVGA 1WT7A 1WWNA 1GPTA 1N4NA 1KV0A 3E7RL 2LR3A 1WMTA 1T7AA 1AYJA 1JZAA 1ZVEA 2GL1A 1NRAA 1DJTA 1ZYVA 2LI7A 4AEIA 1SEGA 2ASCA 1VNAA 2MZ0A 1P0AA 1OZZA 4CQKA 2KYQA 4HE7A 1I6FA 1MYNA 2KGQA 1PE4A 1ICAA 1ZU3A 1GPSA 1P00A 2KBJA 2B3CA 2I61A 4HHFA 2E3FA 2BRZA 2E3GA 1AHOA 2YBRC 1ZFUA 3E7UX 2KBKA 1T0ZA 2KPYA 1BCGA 1SN4A 2N69A 1I2VA 1SN1A 1BK8A 1C55A 2LKBA 2LJ7A 4V1DC 3PSMA 1DQ7A 4UJ0A 1B7DA 1SNBA 1NRBA 1JXCA 1T7BA 1JKZA 2LY5A 2N2QA 2LT8A 4AB0A 2E0HA 1LQIA 2A7TA 5KK4A 4KYPA 2N2RA 1NE5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZUT A;  1C56 A;  1VNB A;  1L4V A;  1T7E A;  2KSK A;  2SN3 A;  1CN2 A;  2KBH A;  2LJM A;  5CY0 A;  1OMY A;  1LQH A;  2NY8 X;  1TI5 A;  1BRZ A;  1I2U A;  2KJA A;  1ZYW A;  2N66 A;  2NY9 X;  1MR4 A;  1NH5 A;  2M8B B;  1PX9 A;  1JZB A;  1PTX A;  1NPI A;  1CHZ A;  1B3C A;  2YEO A;  2LY6 A;  1I6G A;  1FH3 A;  2ATB A;  2YC1 C;  1BMR A;  1LQQ A;  1T1T A;  4AAZ A;  2B68 A;  1ZVG A;  1WT7 A;  1WWN A;  1GPT A;  1N4N A;  1KV0 A;  3E7R L;  2LR3 A;  1WMT A;  1T7A A;  1AYJ A;  1JZA A;  1ZVE A;  2GL1 A;  1NRA A;  1DJT A;  1ZYV A;  2LI7 A;  4AEI A;  1SEG A;  2ASC A;  1VNA A;  2MZ0 A;  1P0A A;  1OZZ A;  4CQK A;  2KYQ A;  4HE7 A;  1I6F A;  1MYN A;  2KGQ A;  1PE4 A;  1ICA A;  1ZU3 A;  1GPS A;  1P00 A;  2KBJ A;  2B3C A;  2I61 A;  4HHF A;  2E3F A;  2BRZ A;  2E3G A;  1AHO A;  2YBR C;  1ZFU A;  3E7U X;  2KBK A;  1T0Z A;  2KPY A;  1BCG A;  1SN4 A;  2N69 A;  1I2V A;  1SN1 A;  1BK8 A;  1C55 A;  2LKB A;  2LJ7 A;  4V1D C;  3PSM A;  1DQ7 A;  4UJ0 A;  1B7D A;  1SNB A;  1NRB A;  1JXC A;  1T7B A;  1JKZ A;  2LY5 A;  2N2Q A;  2LT8 A;  4AB0 A;  2E0H A;  1LQI A;  2A7T A;  5KK4 A;  4KYP A;  2N2R A;  1NE5 A; 
#chains in the Genus database with same CATH topology
 2BUP A;  5F2R A;  1ZUT A;  3I33 A;  5BN8 A;  1C56 A;  1VNB A;  1KAY A;  1L4V A;  1T7E A;  1NGA A;  2KSK A;  3R2V A;  2SN3 A;  2VY6 A;  3GDQ A;  1CN2 A;  3GKU A;  2KBH A;  4UAD E;  3D2E A;  1HX1 A;  3LDP A;  5BPN A;  2LJM A;  5CY0 A;  1OMY A;  3FZM A;  1LQH A;  2NY8 X;  5AQJ A;  2GMO A;  2QW9 A;  3C7N A;  1TI5 A;  4UAE F;  1BRZ A;  4H5V A;  2JDQ D;  2KJA A;  4FL9 A;  3CQX A;  1I2U A;  1ZYW A;  2E2F A;  2N66 A;  4H5R A;  2V7Z A;  2NY9 X;  1NGC A;  1MR4 A;  2QWR A;  3KOW A;  1NH5 A;  2E88 A;  3KHW A;  1NGF A;  3SF4 D;  5AQW A;  1NGD A;  2M8B B;  1PX9 A;  2YIP A;  5EVZ A;  1NGH A;  3IUC A;  1JZB A;  1ATR A;  1PTX A;  1NPI A;  1CHZ A;  1B3C A;  2YEO A;  3FE1 A;  2LY6 A;  3BK3 C;  3LDN A;  1FH3 A;  1I6G A;  2ATB A;  3M3Z A;  2YC1 C;  2E8A A;  1BMR A;  1LQQ A;  1T1T A;  4AAZ A;  2QWL A;  2QWQ A;  4KBO A;  5AQK A;  3FZL A;  4IO8 A;  2B68 A;  1ZVG A;  2LN8 A;  3A8Y A;  1WT7 A;  1WWN A;  5AR0 A;  1N4N A;  1KV0 A;  1GPT A;  2D56 A;  2KHO A;  3CW4 A;  3D2F B;  3E7R L;  3LDO A;  2LR3 A;  5AQG A;  2MBK A;  3KP0 A;  1WMT A;  3L6Q A;  3ATV A;  5AQP A;  1QQO A;  1T7A A;  1HJO A;  1AYJ A;  1JZA A;  1BUP A;  2QWN A;  2MN5 A;  3QML A;  1ZVE A;  5AQU A;  2G2K A;  5EY4 A;  3FZF A;  5AQZ A;  1K8B A;  3KOX A;  2GL1 A;  5AQR A;  1S3X A;  1NRA A;  3KVG A;  3LDL A;  5FPM A;  5AQM A;  1DJT A;  1ZYV A;  5AQV A;  5EX5 A;  3L56 A;  2LI7 A;  2QWP A;  1HPM A;  3FZH A;  5AQI A;  4AEI A;  1SEG A;  5BPL A;  2ASC A;  4H5W A;  1VNA A;  5EXW A;  3FZK A;  2MZ0 A;  1P0A A;  1OZZ A;  3C7N B;  4CQK A;  5BPM A;  2KYQ A;  4HE7 A;  3KC6 A;  1I6F A;  1MYN A;  2KGQ A;  1NGG A;  1PE4 A;  1QQN A;  1ICA A;  5BN9 A;  5AQF A;  1ZU3 A;  1GPS A;  1KAX A;  1P00 A;  3ATU A;  3L4I A;  2KBJ A;  1QQM A;  5AQH A;  2B3C A;  2I61 A;  1YUW A;  4HHF A;  2E3F A;  2BRZ A;  1NGI A;  2E3G A;  1AHO A;  2YBR C;  1ZFU A;  3E7U X;  3QI7 A;  1BA1 A;  3QFU A;  2KBK A;  1T0Z A;  2KPY A;  1BCG A;  1DKG D;  5F0X A;  1SN4 A;  2N69 A;  1ATS A;  3KOY A;  1I2V A;  3KP1 A;  4H5N A;  5AQL A;  2K35 A;  1KAZ A;  1SN1 A;  3D2E B;  2YIL A;  4UAF E;  1BK8 A;  3KOZ A;  1C55 A;  3GL1 A;  3JXU A;  2LKB A;  1BA0 A;  2LJ7 A;  4V1D C;  5AQY A;  5AQX A;  5F1X A;  2QWM A;  5AQO A;  3PSM A;  4KYP A;  3HSC A;  1DQ7 A;  1POI A;  4UJ0 A;  1B7D A;  1SNB A;  1NGB A;  1NRB A;  1JXC A;  1T7B A;  2QWO A;  2QXL A;  2YIO A;  1JKZ A;  1UGL A;  2LY5 A;  2N2Q A;  3LDQ A;  4HWI A;  5FPE A;  4GNI A;  2LT8 A;  4FSV A;  5AQQ A;  4AB0 A;  2E0H A;  3QFP A;  3D2F A;  5AQN A;  3AY9 A;  5FPN A;  5AQT A;  5AQS A;  1LQI A;  1XRS B;  2A7T A;  4H5T A;  5KK4 A;  1NGE A;  1NGJ A;  2N2R A;  1NE5 A;  5FPD A; 
#chains in the Genus database with same CATH homology
 1ZUT A;  1C56 A;  1VNB A;  1L4V A;  1T7E A;  2KSK A;  2SN3 A;  1CN2 A;  2KBH A;  2LJM A;  5CY0 A;  1OMY A;  1LQH A;  2NY8 X;  1TI5 A;  1BRZ A;  1I2U A;  2KJA A;  1ZYW A;  2N66 A;  2NY9 X;  1MR4 A;  1NH5 A;  2M8B B;  1PX9 A;  1JZB A;  1PTX A;  1NPI A;  1CHZ A;  1B3C A;  2YEO A;  2LY6 A;  1I6G A;  1FH3 A;  2ATB A;  2YC1 C;  1BMR A;  1LQQ A;  1T1T A;  4AAZ A;  2B68 A;  1ZVG A;  1WT7 A;  1WWN A;  1GPT A;  1N4N A;  1KV0 A;  3E7R L;  2LR3 A;  1WMT A;  1T7A A;  1AYJ A;  1JZA A;  1ZVE A;  2GL1 A;  1NRA A;  1DJT A;  1ZYV A;  2LI7 A;  4AEI A;  1SEG A;  2ASC A;  1VNA A;  2MZ0 A;  1P0A A;  1OZZ A;  4CQK A;  2KYQ A;  4HE7 A;  1I6F A;  1MYN A;  2KGQ A;  1PE4 A;  1ICA A;  1ZU3 A;  1GPS A;  1P00 A;  2KBJ A;  2B3C A;  2I61 A;  4HHF A;  2E3F A;  2BRZ A;  2E3G A;  1AHO A;  2YBR C;  1ZFU A;  3E7U X;  2KBK A;  1T0Z A;  2KPY A;  1BCG A;  1SN4 A;  2N69 A;  1I2V A;  1SN1 A;  1BK8 A;  1C55 A;  2LKB A;  2LJ7 A;  4V1D C;  3PSM A;  1DQ7 A;  4UJ0 A;  1B7D A;  1SNB A;  1NRB A;  1JXC A;  1T7B A;  1JKZ A;  2LY5 A;  2N2Q A;  2LT8 A;  4AB0 A;  2E0H A;  1LQI A;  2A7T A;  5KK4 A;  4KYP A;  2N2R A;  1NE5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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