1MR4A

Solution structure of nad1 from nicotiana alata
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
47
structure length
47
Chain Sequence
RECKTESNTFPGICITKPPCRKACISEKFTDGHCSKILRRCLCTKPC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Nicotiana alata plant defensin 1 (NaD1)
publication title The Three-dimensional Solution Structure of NaD1, a New Floral Defensin from Nicotiana alata and its Application to a Homology Model of the Crop Defense Protein alfAFP
pubmed doi rcsb
molecule tags Plant protein
total genus 10
structure length 47
sequence length 47
ec nomenclature
pdb deposition date 2002-09-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00304 Gamma-thionin Gamma-thionin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1mr4A00
4KYPA 2N2RA 2KBJA 1NE5A 2I61A 2SN3A 1SNBA 1MR4A 2LKBA 1VNBA 1PTXA 1CN2A 1AYJA 2LT8A 2E3GA 2KJAA 4CQKA 1ZYVA 1BRZA 1NH5A 2A7TA 2E3FA 1SEGA 1T7AA 2LY5A 3E7UX 4UJ0A 1ZVGA 5CY0A 2KGQA 1BK8A 4V1DC 4AEIA 1I2UA 2B3CA 2NY9X 2B68A 3PSMA 1BMRA 1NRBA 2N66A 1LQIA 1PX9A 1B7DA 1ZFUA 2N69A 1ZVEA 2ATBA 1CHZA 2YBRC 1C56A 1SN4A 2LJ7A 2ASCA 1L4VA 1ZU3A 2GL1A 2KSKA 2LI7A 1GPTA 1DJTA 2LR3A 1T7BA 1I6GA 1TI5A 1N4NA 1LQQA 1P00A 2N2QA 5KK4A 1T7EA 2NY8X 1AHOA 1T1TA 1C55A 3E7RL 1FH3A 1OZZA 1NPIA 2LJMA 2KBKA 1P0AA 4HE7A 1OMYA 1LQHA 1T0ZA 1ZUTA 1WWNA 2KYQA 1PE4A 1JZAA 1NRAA 1BCGA 1WMTA 2LY6A 2YC1C 4AB0A 4HHFA 2M8BB 2BRZA 2KPYA 2YEOA 1JZBA 2KBHA 1SN1A 1I2VA 1DQ7A 4AAZA 1JKZA 1GPSA 1MYNA 1I6FA 1WT7A 1B3CA 1JXCA 1VNAA 1ICAA 2E0HA 2MZ0A 1KV0A 1ZYWA
chains in the Genus database with same CATH superfamily
3KVGA 4KYPA 3FZKA 5AR0A 2N2RA 5BPLA 2KBJA 1NE5A 2I61A 2QW9A 1POIA 5AQOA 2SN3A 2MBKA 1SNBA 3GDQA 1MR4A 2LKBA 1QQMA 1VNBA 1PTXA 3KOWA 5AQRA 1K8BA 1BA0A 1CN2A 3D2FB 4H5VA 1AYJA 2LT8A 2E3GA 2KJAA 4CQKA 4FL9A 1ZYVA 1DKGD 3FZHA 1BRZA 1NGDA 1NH5A 2A7TA 2E3FA 1YUWA 2YIOA 1SEGA 1T7AA 2LY5A 4UADE 3E7UX 2KHOA 1ZVGA 3FZFA 2KGQA 4UJ0A 2QWRA 5CY0A 5AQSA 3HSCA 4V1DC 4AEIA 4UAEF 1I2UA 2QWNA 3A8YA 4H5WA 1BMRA 2B3CA 4H5NA 5AQLA 1NGGA 1KAYA 2NY9X 4FSVA 1NGAA 2B68A 3ATUA 2GMOA 2QWMA 1NRBA 2BUPA 1NGIA 1S3XA 2N66A 3PSMA 3FE1A 4H5TA 4IO8A 2QWOA 1LQIA 3L56A 1PX9A 2V7ZA 1B7DA 5F0XA 1ZFUA 2N69A 5AQVA 1ZVEA 1NGCA 1KAXA 5AQMA 2ATBA 2VY6A 1CHZA 4GNIA 5AQWA 2QWPA 2YBRC 2QWLA 5BPMA 1C56A 1QQNA 1SN4A 3FZMA 5AQUA 2LJ7A 5AQIA 2ASCA 1L4VA 5AQKA 3KP1A 3LDLA 1ZU3A 5AQQA 2GL1A 3KHWA 1NGFA 5F1XA 2KSKA 5AQFA 3SF4D 2JDQD 3IUCA 2LI7A 5FPDA 1GPTA 1DJTA 2LR3A 2E2FA 1T7BA 2G2KA 3QFUA 1I6GA 3KOZA 1TI5A 3BK3C 1N4NA 1LQQA 1BUPA 1QQOA 1BA1A 1P00A 1NGBA 2K35A 3GL1A 5AQGA 5AQNA 3R2VA 2N2QA 5KK4A 3C7NA 3CQXA 1T7EA 2NY8X 1AHOA 1T1TA 1NGEA 5AQYA 1C55A 3QMLA 2MN5A 3E7RL 5FPNA 1ATRA 5AQTA 1FH3A 1OZZA 1NPIA 2LJMA 3C7NB 5FPMA 3LDPA 5AQJA 2KBKA 3KC6A 3JXUA 3KOXA 1P0AA 1NGJA 4HE7A 2YILA 3LDOA 1OMYA 1KAZA 3LDQA 5EXWA 5BN9A 1LQHA 1T0ZA 2D56A 5AQXA 3I33A 3KOYA 5AQHA 1ZUTA 5AQPA 1WWNA 2KYQA 2LN8A 1PE4A 1JZAA 1NRAA 1BCGA 5BPNA 3LDNA 5F2RA 3ATVA 1WMTA 2LY6A 1UGLA 2E88A 3L4IA 1HJOA 3KP0A 2YC1C 5EY4A 3L6QA 4HWIA 4UAFE 3M3ZA 4AB0A 3QI7A 4HHFA 1XRSB 2QXLA 2M8BB 1BK8A 2BRZA 3D2EA 1NGHA 2KPYA 2YEOA 1JZBA 2KBHA 1SN1A 5EVZA 3QFPA 5BN8A 3CW4A 2YIPA 1I2VA 3D2EB 1DQ7A 3AY9A 4AAZA 1JKZA 5FPEA 4KBOA 1MYNA 1GPSA 1I6FA 1WT7A 1B3CA 5AQZA 4H5RA 2QWQA 3GKUA 1JXCA 1VNAA 1HX1A 5EX5A 2E8AA 1HPMA 1ICAA 2E0HA 2MZ0A 3FZLA 1KV0A 3D2FA 1ZYWA 1ATSA
chains in the Genus database with same CATH topology
4KYPA 2N2RA 2KBJA 1NE5A 2I61A 2SN3A 1SNBA 1MR4A 2LKBA 1VNBA 1PTXA 1CN2A 1AYJA 2LT8A 2E3GA 2KJAA 4CQKA 1ZYVA 1BRZA 1NH5A 2A7TA 2E3FA 1SEGA 1T7AA 2LY5A 3E7UX 4UJ0A 1ZVGA 5CY0A 2KGQA 1BK8A 4V1DC 4AEIA 1I2UA 2B3CA 2NY9X 2B68A 3PSMA 1BMRA 1NRBA 2N66A 1LQIA 1PX9A 1B7DA 1ZFUA 2N69A 1ZVEA 2ATBA 1CHZA 2YBRC 1C56A 1SN4A 2LJ7A 2ASCA 1L4VA 1ZU3A 2GL1A 2KSKA 2LI7A 1GPTA 1DJTA 2LR3A 1T7BA 1I6GA 1TI5A 1N4NA 1LQQA 1P00A 2N2QA 5KK4A 1T7EA 2NY8X 1AHOA 1T1TA 1C55A 3E7RL 1FH3A 1OZZA 1NPIA 2LJMA 2KBKA 1P0AA 4HE7A 1OMYA 1LQHA 1T0ZA 1ZUTA 1WWNA 2KYQA 1PE4A 1JZAA 1NRAA 1BCGA 1WMTA 2LY6A 2YC1C 4AB0A 4HHFA 2M8BB 2BRZA 2KPYA 2YEOA 1JZBA 2KBHA 1SN1A 1I2VA 1DQ7A 4AAZA 1JKZA 1GPSA 1MYNA 1I6FA 1WT7A 1B3CA 1JXCA 1VNAA 1ICAA 2E0HA 2MZ0A 1KV0A 1ZYWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KYP A;  2N2R A;  2KBJ A;  1NE5 A;  2I61 A;  2SN3 A;  1SNB A;  1MR4 A;  2LKB A;  1VNB A;  1PTX A;  1CN2 A;  1AYJ A;  2LT8 A;  2E3G A;  2KJA A;  4CQK A;  1ZYV A;  1BRZ A;  1NH5 A;  2A7T A;  2E3F A;  1SEG A;  1T7A A;  2LY5 A;  3E7U X;  4UJ0 A;  1ZVG A;  5CY0 A;  2KGQ A;  1BK8 A;  4V1D C;  4AEI A;  1I2U A;  2B3C A;  2NY9 X;  2B68 A;  3PSM A;  1BMR A;  1NRB A;  2N66 A;  1LQI A;  1PX9 A;  1B7D A;  1ZFU A;  2N69 A;  1ZVE A;  2ATB A;  1CHZ A;  2YBR C;  1C56 A;  1SN4 A;  2LJ7 A;  2ASC A;  1L4V A;  1ZU3 A;  2GL1 A;  2KSK A;  2LI7 A;  1GPT A;  1DJT A;  2LR3 A;  1T7B A;  1I6G A;  1TI5 A;  1N4N A;  1LQQ A;  1P00 A;  2N2Q A;  5KK4 A;  1T7E A;  2NY8 X;  1AHO A;  1T1T A;  1C55 A;  3E7R L;  1FH3 A;  1OZZ A;  1NPI A;  2LJM A;  2KBK A;  1P0A A;  4HE7 A;  1OMY A;  1LQH A;  1T0Z A;  1ZUT A;  1WWN A;  2KYQ A;  1PE4 A;  1JZA A;  1NRA A;  1BCG A;  1WMT A;  2LY6 A;  2YC1 C;  4AB0 A;  4HHF A;  2M8B B;  2BRZ A;  2KPY A;  2YEO A;  1JZB A;  2KBH A;  1SN1 A;  1I2V A;  1DQ7 A;  4AAZ A;  1JKZ A;  1GPS A;  1MYN A;  1I6F A;  1WT7 A;  1B3C A;  1JXC A;  1VNA A;  1ICA A;  2E0H A;  2MZ0 A;  1KV0 A;  1ZYW A; 
#chains in the Genus database with same CATH topology
 3KVG A;  4KYP A;  3FZK A;  5AR0 A;  2N2R A;  5BPL A;  2KBJ A;  1NE5 A;  2I61 A;  2QW9 A;  1POI A;  5AQO A;  2SN3 A;  2MBK A;  1SNB A;  3GDQ A;  1MR4 A;  2LKB A;  1QQM A;  1VNB A;  1PTX A;  3KOW A;  5AQR A;  1K8B A;  1BA0 A;  1CN2 A;  3D2F B;  4H5V A;  1AYJ A;  2LT8 A;  2E3G A;  2KJA A;  4CQK A;  4FL9 A;  1ZYV A;  1DKG D;  3FZH A;  1BRZ A;  1NGD A;  1NH5 A;  2A7T A;  2E3F A;  1YUW A;  2YIO A;  1SEG A;  1T7A A;  2LY5 A;  4UAD E;  3E7U X;  2KHO A;  1ZVG A;  3FZF A;  2KGQ A;  4UJ0 A;  2QWR A;  5CY0 A;  5AQS A;  3HSC A;  4V1D C;  4AEI A;  4UAE F;  1I2U A;  2QWN A;  3A8Y A;  4H5W A;  1BMR A;  2B3C A;  4H5N A;  5AQL A;  1NGG A;  1KAY A;  2NY9 X;  4FSV A;  1NGA A;  2B68 A;  3ATU A;  2GMO A;  2QWM A;  1NRB A;  2BUP A;  1NGI A;  1S3X A;  2N66 A;  3PSM A;  3FE1 A;  4H5T A;  4IO8 A;  2QWO A;  1LQI A;  3L56 A;  1PX9 A;  2V7Z A;  1B7D A;  5F0X A;  1ZFU A;  2N69 A;  5AQV A;  1ZVE A;  1NGC A;  1KAX A;  5AQM A;  2ATB A;  2VY6 A;  1CHZ A;  4GNI A;  5AQW A;  2QWP A;  2YBR C;  2QWL A;  5BPM A;  1C56 A;  1QQN A;  1SN4 A;  3FZM A;  5AQU A;  2LJ7 A;  5AQI A;  2ASC A;  1L4V A;  5AQK A;  3KP1 A;  3LDL A;  1ZU3 A;  5AQQ A;  2GL1 A;  3KHW A;  1NGF A;  5F1X A;  2KSK A;  5AQF A;  3SF4 D;  2JDQ D;  3IUC A;  2LI7 A;  5FPD A;  1GPT A;  1DJT A;  2LR3 A;  2E2F A;  1T7B A;  2G2K A;  3QFU A;  1I6G A;  3KOZ A;  1TI5 A;  3BK3 C;  1N4N A;  1LQQ A;  1BUP A;  1QQO A;  1BA1 A;  1P00 A;  1NGB A;  2K35 A;  3GL1 A;  5AQG A;  5AQN A;  3R2V A;  2N2Q A;  5KK4 A;  3C7N A;  3CQX A;  1T7E A;  2NY8 X;  1AHO A;  1T1T A;  1NGE A;  5AQY A;  1C55 A;  3QML A;  2MN5 A;  3E7R L;  5FPN A;  1ATR A;  5AQT A;  1FH3 A;  1OZZ A;  1NPI A;  2LJM A;  3C7N B;  5FPM A;  3LDP A;  5AQJ A;  2KBK A;  3KC6 A;  3JXU A;  3KOX A;  1P0A A;  1NGJ A;  4HE7 A;  2YIL A;  3LDO A;  1OMY A;  1KAZ A;  3LDQ A;  5EXW A;  5BN9 A;  1LQH A;  1T0Z A;  2D56 A;  5AQX A;  3I33 A;  3KOY A;  5AQH A;  1ZUT A;  5AQP A;  1WWN A;  2KYQ A;  2LN8 A;  1PE4 A;  1JZA A;  1NRA A;  1BCG A;  5BPN A;  3LDN A;  5F2R A;  3ATV A;  1WMT A;  2LY6 A;  1UGL A;  2E88 A;  3L4I A;  1HJO A;  3KP0 A;  2YC1 C;  5EY4 A;  3L6Q A;  4HWI A;  4UAF E;  3M3Z A;  4AB0 A;  3QI7 A;  4HHF A;  1XRS B;  2QXL A;  2M8B B;  1BK8 A;  2BRZ A;  3D2E A;  1NGH A;  2KPY A;  2YEO A;  1JZB A;  2KBH A;  1SN1 A;  5EVZ A;  3QFP A;  5BN8 A;  3CW4 A;  2YIP A;  1I2V A;  3D2E B;  1DQ7 A;  3AY9 A;  4AAZ A;  1JKZ A;  5FPE A;  4KBO A;  1MYN A;  1GPS A;  1I6F A;  1WT7 A;  1B3C A;  5AQZ A;  4H5R A;  2QWQ A;  3GKU A;  1JXC A;  1VNA A;  1HX1 A;  5EX5 A;  2E8A A;  1HPM A;  1ICA A;  2E0H A;  2MZ0 A;  3FZL A;  1KV0 A;  3D2F A;  1ZYW A;  1ATS A; 
#chains in the Genus database with same CATH homology
 4KYP A;  2N2R A;  2KBJ A;  1NE5 A;  2I61 A;  2SN3 A;  1SNB A;  1MR4 A;  2LKB A;  1VNB A;  1PTX A;  1CN2 A;  1AYJ A;  2LT8 A;  2E3G A;  2KJA A;  4CQK A;  1ZYV A;  1BRZ A;  1NH5 A;  2A7T A;  2E3F A;  1SEG A;  1T7A A;  2LY5 A;  3E7U X;  4UJ0 A;  1ZVG A;  5CY0 A;  2KGQ A;  1BK8 A;  4V1D C;  4AEI A;  1I2U A;  2B3C A;  2NY9 X;  2B68 A;  3PSM A;  1BMR A;  1NRB A;  2N66 A;  1LQI A;  1PX9 A;  1B7D A;  1ZFU A;  2N69 A;  1ZVE A;  2ATB A;  1CHZ A;  2YBR C;  1C56 A;  1SN4 A;  2LJ7 A;  2ASC A;  1L4V A;  1ZU3 A;  2GL1 A;  2KSK A;  2LI7 A;  1GPT A;  1DJT A;  2LR3 A;  1T7B A;  1I6G A;  1TI5 A;  1N4N A;  1LQQ A;  1P00 A;  2N2Q A;  5KK4 A;  1T7E A;  2NY8 X;  1AHO A;  1T1T A;  1C55 A;  3E7R L;  1FH3 A;  1OZZ A;  1NPI A;  2LJM A;  2KBK A;  1P0A A;  4HE7 A;  1OMY A;  1LQH A;  1T0Z A;  1ZUT A;  1WWN A;  2KYQ A;  1PE4 A;  1JZA A;  1NRA A;  1BCG A;  1WMT A;  2LY6 A;  2YC1 C;  4AB0 A;  4HHF A;  2M8B B;  2BRZ A;  2KPY A;  2YEO A;  1JZB A;  2KBH A;  1SN1 A;  1I2V A;  1DQ7 A;  4AAZ A;  1JKZ A;  1GPS A;  1MYN A;  1I6F A;  1WT7 A;  1B3C A;  1JXC A;  1VNA A;  1ICA A;  2E0H A;  2MZ0 A;  1KV0 A;  1ZYW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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