1MR4A

Solution structure of nad1 from nicotiana alata
Total Genus 10
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
47
structure length
47
Chain Sequence
RECKTESNTFPGICITKPPCRKACISEKFTDGHCSKILRRCLCTKPC
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title The Three-dimensional Solution Structure of NaD1, a New Floral Defensin from Nicotiana alata and its Application to a Homology Model of the Crop Defense Protein alfAFP
pubmed doi rcsb
molecule keywords Nicotiana alata plant defensin 1 (NaD1)
molecule tags Plant protein
total genus 10
structure length 47
sequence length 47
ec nomenclature
pdb deposition date 2002-09-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00304 Gamma-thionin Gamma-thionin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1mr4A00
3E7RL 1ZFUA 2E0HA 2LY6A 1FH3A 1T7BA 1MR4A 1ZVGA 2LR3A 1AHOA 1MYNA 2GL1A 2M8BB 1OMYA 4AB0A 2KBKA 2N69A 1NRAA 1TI5A 1WWNA 1LQHA 1VNAA 1ZYVA 4KYPA 1BMRA 1T7AA 1NH5A 2KJAA 4AEIA 2B3CA 1LQQA 1SNBA 1PX9A 2YBRC 1NE5A 1PTXA 2LKBA 2YC1C 2B68A 2ASCA 2KYQA 3PSMA 1DJTA 2KBHA 2KSKA 2A7TA 2N66A 2LJMA 1I2UA 2E3GA 4HHFA 1SEGA 2NY8X 1GPSA 1P00A 1PE4A 2I61A 5CY0A 1WT7A 1KV0A 1N4NA 5KK4A 1T0ZA 2MZ0A 1ZUTA 1T7EA 1VNBA 2LJ7A 1C56A 1ICAA 2LY5A 1BRZA 1AYJA 1GPTA 1NPIA 2KGQA 1B7DA 2LI7A 1B3CA 1OZZA 1NRBA 4AAZA 1I2VA 1C55A 1SN4A 2SN3A 2KBJA 1SN1A 1DQ7A 2BRZA 1WMTA 2N2QA 1CHZA 2E3FA 2LT8A 3E7UX 1LQIA 1L4VA 1T1TA 4V1DC 2KPYA 1I6GA 4CQKA 2YEOA 4UJ0A 2N2RA 1JZBA 1I6FA 1JKZA 1P0AA 1ZVEA 1JZAA 1BK8A 1JXCA 1ZYWA 2ATBA 1CN2A 1BCGA 1ZU3A 2NY9X 4HE7A
chains in the Genus database with same CATH superfamily
2G2KA 3E7RL 1ZFUA 5AQHA 5AQJA 1HPMA 2E0HA 2LY6A 1ATSA 1XRSB 2QXLA 3I33A 1T7BA 1POIA 3D2EB 5EX5A 1FH3A 1MR4A 1NGFA 1ZVGA 2LR3A 1AHOA 1MYNA 2GL1A 2M8BB 1OMYA 1YUWA 2E88A 4H5WA 5AQFA 5AQVA 2KBKA 4AB0A 5BN9A 1NGBA 2N69A 1NRAA 5EVZA 1TI5A 4GNIA 4H5RA 1WWNA 1BA1A 2QWOA 2QWNA 1LQHA 1VNAA 1ZYVA 3D2FA 3KP0A 4KYPA 5BPNA 1BMRA 1T7AA 1NH5A 4FL9A 4UADE 2KJAA 4AEIA 2B3CA 1LQQA 1SNBA 5F2RA 1PX9A 1NGIA 2KHOA 3LDPA 1QQMA 2YBRC 5AQTA 2QWLA 1NE5A 1PTXA 2LKBA 2YC1C 3D2EA 2B68A 2ASCA 2D56A 2KYQA 5AQNA 2E2FA 1DJTA 1HJOA 3PSMA 2KBHA 3KP1A 2KSKA 3KVGA 1ATRA 2A7TA 2GMOA 3HSCA 4IO8A 5AQRA 3LDLA 5AQUA 2N66A 3FE1A 3FZFA 3IUCA 5AQXA 2LJMA 3SF4D 2BUPA 3L6QA 1I2UA 2E3GA 4HHFA 1SEGA 1BUPA 2NY8X 1GPSA 1P00A 3QFPA 5AQSA 1NGEA 1PE4A 2I61A 1DKGD 2YIPA 3KOWA 2V7ZA 4H5TA 5CY0A 2JDQD 1K8BA 5AQOA 2YILA 1WT7A 2LN8A 1KV0A 1N4NA 5KK4A 1T0ZA 3KHWA 5AQLA 2MZ0A 3GL1A 2K35A 1NGCA 3R2VA 1ZUTA 1T7EA 3QI7A 5FPMA 5AQYA 3C7NB 1VNBA 3CQXA 2LJ7A 1NGAA 1C56A 5AQIA 3FZMA 3LDOA 5F0XA 2LY5A 1ICAA 3KOXA 1BRZA 1AYJA 1GPTA 1NPIA 2YIOA 2KGQA 1B7DA 5FPDA 2LI7A 1B3CA 5EY4A 5BPLA 1OZZA 3LDQA 1NRBA 4AAZA 1KAZA 5AQKA 3CW4A 5EXWA 1I2VA 1C55A 3GDQA 5AQMA 1SN4A 3FZKA 2SN3A 3D2FB 5BN8A 3L56A 3A8YA 2MBKA 2KBJA 2MN5A 3FZHA 3KOZA 3M3ZA 3QFUA 4KBOA 1SN1A 2QWPA 1DQ7A 2BRZA 3L4IA 5AR0A 1WMTA 3LDNA 5F1XA 1QQOA 3FZLA 2N2QA 1KAYA 1BA0A 5FPEA 1KAXA 5AQZA 1CHZA 2E3FA 2LT8A 3E7UX 1LQIA 4UAEF 1T1TA 1L4VA 1NGJA 3QMLA 3AY9A 1HX1A 1QQNA 2KPYA 3KC6A 4V1DC 4H5NA 5AQWA 2QWQA 1S3XA 1I6GA 4CQKA 2YEOA 4UJ0A 2N2RA 5AQQA 3GKUA 5AQPA 1JZBA 1I6FA 1JKZA 3JXUA 1P0AA 4H5VA 2QW9A 2E8AA 1ZVEA 3ATVA 4FSVA 1JZAA 1BK8A 4UAFE 2QWRA 1JXCA 5BPMA 4HWIA 2NY9X 5AQGA 3C7NA 1ZYWA 1NGHA 2ATBA 1CN2A 2QWMA 1BCGA 3ATUA 1ZU3A 3KOYA 3BK3C 1NGDA 5FPNA 1UGLA 1NGGA 2VY6A 4HE7A
chains in the Genus database with same CATH topology
3E7RL 1ZFUA 2E0HA 2LY6A 1FH3A 1T7BA 1MR4A 1ZVGA 2LR3A 1AHOA 1MYNA 2GL1A 2M8BB 1OMYA 4AB0A 2KBKA 2N69A 1NRAA 1TI5A 1WWNA 1LQHA 1VNAA 1ZYVA 4KYPA 1BMRA 1T7AA 1NH5A 2KJAA 4AEIA 2B3CA 1LQQA 1SNBA 1PX9A 2YBRC 1NE5A 1PTXA 2LKBA 2YC1C 2B68A 2ASCA 2KYQA 3PSMA 1DJTA 2KBHA 2KSKA 2A7TA 2N66A 2LJMA 1I2UA 2E3GA 4HHFA 1SEGA 2NY8X 1GPSA 1P00A 1PE4A 2I61A 5CY0A 1WT7A 1KV0A 1N4NA 5KK4A 1T0ZA 2MZ0A 1ZUTA 1T7EA 1VNBA 2LJ7A 1C56A 1ICAA 2LY5A 1BRZA 1AYJA 1GPTA 1NPIA 2KGQA 1B7DA 2LI7A 1B3CA 1OZZA 1NRBA 4AAZA 1I2VA 1C55A 1SN4A 2SN3A 2KBJA 1SN1A 1DQ7A 2BRZA 1WMTA 2N2QA 1CHZA 2E3FA 2LT8A 3E7UX 1LQIA 1L4VA 1T1TA 4V1DC 2KPYA 1I6GA 4CQKA 2YEOA 4UJ0A 2N2RA 1JZBA 1I6FA 1JKZA 1P0AA 1ZVEA 1JZAA 1BK8A 1JXCA 1ZYWA 2ATBA 1CN2A 1BCGA 1ZU3A 2NY9X 4HE7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3E7R L;  1ZFU A;  2E0H A;  2LY6 A;  1FH3 A;  1T7B A;  1MR4 A;  1ZVG A;  2LR3 A;  1AHO A;  1MYN A;  2GL1 A;  2M8B B;  1OMY A;  4AB0 A;  2KBK A;  2N69 A;  1NRA A;  1TI5 A;  1WWN A;  1LQH A;  1VNA A;  1ZYV A;  4KYP A;  1BMR A;  1T7A A;  1NH5 A;  2KJA A;  4AEI A;  2B3C A;  1LQQ A;  1SNB A;  1PX9 A;  2YBR C;  1NE5 A;  1PTX A;  2LKB A;  2YC1 C;  2B68 A;  2ASC A;  2KYQ A;  3PSM A;  1DJT A;  2KBH A;  2KSK A;  2A7T A;  2N66 A;  2LJM A;  1I2U A;  2E3G A;  4HHF A;  1SEG A;  2NY8 X;  1GPS A;  1P00 A;  1PE4 A;  2I61 A;  5CY0 A;  1WT7 A;  1KV0 A;  1N4N A;  5KK4 A;  1T0Z A;  2MZ0 A;  1ZUT A;  1T7E A;  1VNB A;  2LJ7 A;  1C56 A;  1ICA A;  2LY5 A;  1BRZ A;  1AYJ A;  1GPT A;  1NPI A;  2KGQ A;  1B7D A;  2LI7 A;  1B3C A;  1OZZ A;  1NRB A;  4AAZ A;  1I2V A;  1C55 A;  1SN4 A;  2SN3 A;  2KBJ A;  1SN1 A;  1DQ7 A;  2BRZ A;  1WMT A;  2N2Q A;  1CHZ A;  2E3F A;  2LT8 A;  3E7U X;  1LQI A;  1L4V A;  1T1T A;  4V1D C;  2KPY A;  1I6G A;  4CQK A;  2YEO A;  4UJ0 A;  2N2R A;  1JZB A;  1I6F A;  1JKZ A;  1P0A A;  1ZVE A;  1JZA A;  1BK8 A;  1JXC A;  1ZYW A;  2ATB A;  1CN2 A;  1BCG A;  1ZU3 A;  2NY9 X;  4HE7 A; 
#chains in the Genus database with same CATH topology
 2G2K A;  3E7R L;  1ZFU A;  5AQH A;  5AQJ A;  1HPM A;  2E0H A;  2LY6 A;  1ATS A;  1XRS B;  2QXL A;  3I33 A;  1T7B A;  1POI A;  3D2E B;  5EX5 A;  1FH3 A;  1MR4 A;  1NGF A;  1ZVG A;  2LR3 A;  1AHO A;  1MYN A;  2GL1 A;  2M8B B;  1OMY A;  1YUW A;  2E88 A;  4H5W A;  5AQF A;  5AQV A;  2KBK A;  4AB0 A;  5BN9 A;  1NGB A;  2N69 A;  1NRA A;  5EVZ A;  1TI5 A;  4GNI A;  4H5R A;  1WWN A;  1BA1 A;  2QWO A;  2QWN A;  1LQH A;  1VNA A;  1ZYV A;  3D2F A;  3KP0 A;  4KYP A;  5BPN A;  1BMR A;  1T7A A;  1NH5 A;  4FL9 A;  4UAD E;  2KJA A;  4AEI A;  2B3C A;  1LQQ A;  1SNB A;  5F2R A;  1PX9 A;  1NGI A;  2KHO A;  3LDP A;  1QQM A;  2YBR C;  5AQT A;  2QWL A;  1NE5 A;  1PTX A;  2LKB A;  2YC1 C;  3D2E A;  2B68 A;  2ASC A;  2D56 A;  2KYQ A;  5AQN A;  2E2F A;  1DJT A;  1HJO A;  3PSM A;  2KBH A;  3KP1 A;  2KSK A;  3KVG A;  1ATR A;  2A7T A;  2GMO A;  3HSC A;  4IO8 A;  5AQR A;  3LDL A;  5AQU A;  2N66 A;  3FE1 A;  3FZF A;  3IUC A;  5AQX A;  2LJM A;  3SF4 D;  2BUP A;  3L6Q A;  1I2U A;  2E3G A;  4HHF A;  1SEG A;  1BUP A;  2NY8 X;  1GPS A;  1P00 A;  3QFP A;  5AQS A;  1NGE A;  1PE4 A;  2I61 A;  1DKG D;  2YIP A;  3KOW A;  2V7Z A;  4H5T A;  5CY0 A;  2JDQ D;  1K8B A;  5AQO A;  2YIL A;  1WT7 A;  2LN8 A;  1KV0 A;  1N4N A;  5KK4 A;  1T0Z A;  3KHW A;  5AQL A;  2MZ0 A;  3GL1 A;  2K35 A;  1NGC A;  3R2V A;  1ZUT A;  1T7E A;  3QI7 A;  5FPM A;  5AQY A;  3C7N B;  1VNB A;  3CQX A;  2LJ7 A;  1NGA A;  1C56 A;  5AQI A;  3FZM A;  3LDO A;  5F0X A;  2LY5 A;  1ICA A;  3KOX A;  1BRZ A;  1AYJ A;  1GPT A;  1NPI A;  2YIO A;  2KGQ A;  1B7D A;  5FPD A;  2LI7 A;  1B3C A;  5EY4 A;  5BPL A;  1OZZ A;  3LDQ A;  1NRB A;  4AAZ A;  1KAZ A;  5AQK A;  3CW4 A;  5EXW A;  1I2V A;  1C55 A;  3GDQ A;  5AQM A;  1SN4 A;  3FZK A;  2SN3 A;  3D2F B;  5BN8 A;  3L56 A;  3A8Y A;  2MBK A;  2KBJ A;  2MN5 A;  3FZH A;  3KOZ A;  3M3Z A;  3QFU A;  4KBO A;  1SN1 A;  2QWP A;  1DQ7 A;  2BRZ A;  3L4I A;  5AR0 A;  1WMT A;  3LDN A;  5F1X A;  1QQO A;  3FZL A;  2N2Q A;  1KAY A;  1BA0 A;  5FPE A;  1KAX A;  5AQZ A;  1CHZ A;  2E3F A;  2LT8 A;  3E7U X;  1LQI A;  4UAE F;  1T1T A;  1L4V A;  1NGJ A;  3QML A;  3AY9 A;  1HX1 A;  1QQN A;  2KPY A;  3KC6 A;  4V1D C;  4H5N A;  5AQW A;  2QWQ A;  1S3X A;  1I6G A;  4CQK A;  2YEO A;  4UJ0 A;  2N2R A;  5AQQ A;  3GKU A;  5AQP A;  1JZB A;  1I6F A;  1JKZ A;  3JXU A;  1P0A A;  4H5V A;  2QW9 A;  2E8A A;  1ZVE A;  3ATV A;  4FSV A;  1JZA A;  1BK8 A;  4UAF E;  2QWR A;  1JXC A;  5BPM A;  4HWI A;  2NY9 X;  5AQG A;  3C7N A;  1ZYW A;  1NGH A;  2ATB A;  1CN2 A;  2QWM A;  1BCG A;  3ATU A;  1ZU3 A;  3KOY A;  3BK3 C;  1NGD A;  5FPN A;  1UGL A;  1NGG A;  2VY6 A;  4HE7 A; 
#chains in the Genus database with same CATH homology
 3E7R L;  1ZFU A;  2E0H A;  2LY6 A;  1FH3 A;  1T7B A;  1MR4 A;  1ZVG A;  2LR3 A;  1AHO A;  1MYN A;  2GL1 A;  2M8B B;  1OMY A;  4AB0 A;  2KBK A;  2N69 A;  1NRA A;  1TI5 A;  1WWN A;  1LQH A;  1VNA A;  1ZYV A;  4KYP A;  1BMR A;  1T7A A;  1NH5 A;  2KJA A;  4AEI A;  2B3C A;  1LQQ A;  1SNB A;  1PX9 A;  2YBR C;  1NE5 A;  1PTX A;  2LKB A;  2YC1 C;  2B68 A;  2ASC A;  2KYQ A;  3PSM A;  1DJT A;  2KBH A;  2KSK A;  2A7T A;  2N66 A;  2LJM A;  1I2U A;  2E3G A;  4HHF A;  1SEG A;  2NY8 X;  1GPS A;  1P00 A;  1PE4 A;  2I61 A;  5CY0 A;  1WT7 A;  1KV0 A;  1N4N A;  5KK4 A;  1T0Z A;  2MZ0 A;  1ZUT A;  1T7E A;  1VNB A;  2LJ7 A;  1C56 A;  1ICA A;  2LY5 A;  1BRZ A;  1AYJ A;  1GPT A;  1NPI A;  2KGQ A;  1B7D A;  2LI7 A;  1B3C A;  1OZZ A;  1NRB A;  4AAZ A;  1I2V A;  1C55 A;  1SN4 A;  2SN3 A;  2KBJ A;  1SN1 A;  1DQ7 A;  2BRZ A;  1WMT A;  2N2Q A;  1CHZ A;  2E3F A;  2LT8 A;  3E7U X;  1LQI A;  1L4V A;  1T1T A;  4V1D C;  2KPY A;  1I6G A;  4CQK A;  2YEO A;  4UJ0 A;  2N2R A;  1JZB A;  1I6F A;  1JKZ A;  1P0A A;  1ZVE A;  1JZA A;  1BK8 A;  1JXC A;  1ZYW A;  2ATB A;  1CN2 A;  1BCG A;  1ZU3 A;  2NY9 X;  4HE7 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...