3KHWA

Crystal structure of the large c-terminal domain of polymerase basic protein 2 from influenza virus a/mexico/indre4487/2009(h1n1)
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
201
structure length
201
Chain Sequence
GPESVLVNTYQWIIRNWEIVKIQWSQDPTMLYNKMEFEPFQSLVPKATRSRYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPEQSRMQFSSLTVNVRGSGLRILVRGNSPVFNYNKATKRLTVLGKDAGALTEDPDEGTSGVESAVLRGFLILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRDS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Viral protein
molecule keywords Polymerase PB2
publication title Biological and structural characterization of a host-adapting amino acid in influenza virus.
pubmed doi rcsb
source organism Influenza a virus (a/mexico/indre4487/2009(h1n1))
total genus 54
structure length 201
sequence length 201
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-10-31
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.90 Alpha Beta 2-Layer Sandwich Defensin A-like Defensin A-like 3khwA02
3KC6A 4UAEF 2VY6A 3KHWA 4UADE 2GMOA 3L56A 3CW4A 3R2VA 4UAFE 2JDQD
chains in the Genus database with same CATH superfamily
2BUPA 2KJAA 3L6QA 5FPMA 1GPSA 2MBKA 1P0AA 2QWPA 3KP1A 5AQWA 4CQKA 5EY4A 2B68A 3A8YA 1I2UA 5FPNA 3C7NB 2BRZA 3KVGA 1NGDA 2YC1C 2KHOA 4KYPA 1AYJA 1TI5A 3L4IA 3LDOA 2D56A 1S3XA 1AHOA 4H5RA 1NH5A 3C7NA 3KP0A 1DJTA 3LDNA 1NGFA 2E0HA 1L4VA 5AQKA 1JKZA 1NGGA 2N2RA 2E3GA 1SN4A 3KOZA 3E7UX 5AQRA 3LDLA 1NE5A 1NGEA 1T1TA 3QI7A 2QWRA 1I6GA 2B3CA 1OMYA 3FZMA 1T7EA 5AQIA 3KOXA 1ZVGA 2NY8X 3KC6A 2K35A 2I61A 3KOWA 3BK3C 1QQOA 3GL1A 1JZAA 1OZZA 1WWNA 5AQMA 2N69A 1N4NA 2QWMA 1P00A 5BN8A 3D2EB 1WMTA 1ZU3A 5FPEA 1ATRA 1PTXA 2YILA 1ZYVA 1BA0A 3D2EA 2KBKA 2QW9A 3FZHA 3L56A 5AQOA 5BN9A 1BMRA 1NGBA 1YUWA 1NGCA 1UGLA 2E3FA 3AY9A 1WT7A 1SN1A 1T7BA 1GPTA 4H5WA 4HE7A 1B7DA 3JXUA 3GKUA 1KAYA 5FPDA 5BPLA 3FE1A 5KK4A 1BRZA 1BA1A 2LY5A 1DKGD 3R2VA 1KAZA 2GL1A 1JZBA 4AAZA 5AQGA 2MZ0A 2LY6A 2E2FA 2YBRC 1HPMA 1HJOA 1JXCA 1LQHA 4FL9A 1SNBA 1SEGA 2MN5A 5AQLA 5BPMA 5EVZA 2YIPA 5CY0A 3ATVA 4AEIA 2KYQA 1KV0A 2N66A 1HX1A 3CW4A 2LI7A 5AQYA 5F1XA 1ICAA 2LJ7A 3M3ZA 1ZFUA 3PSMA 5AR0A 5AQZA 2ASCA 1QQNA 1XRSB 4UAFE 5EXWA 1PE4A 4HHFA 2GMOA 5F0XA 1PX9A 4V1DC 3D2FB 1VNAA 4KBOA 1NPIA 1NRAA 1NGIA 5AQJA 1BCGA 1QQMA 5AQVA 2KBJA 4FSVA 1B3CA 4H5TA 1NGJA 2QWNA 3I33A 2YEOA 2QWQA 1MR4A 2LT8A 4H5VA 1VNBA 1DQ7A 3HSCA 2VY6A 3KHWA 1CHZA 2KPYA 2M8BB 1T0ZA 2YIOA 1I2VA 2E8AA 3QFPA 1ATSA 2ATBA 3E7RL 3LDPA 5AQPA 2LN8A 2N2QA 1NRBA 3IUCA 5EX5A 3ATUA 5AQFA 2A7TA 1ZVEA 1ZYWA 4UAEF 1KAXA 2G2KA 2LKBA 1K8BA 4H5NA 2E88A 4HWIA 5AQNA 2NY9X 3QMLA 3SF4D 3QFUA 3FZKA 5AQQA 5AQUA 4GNIA 1BK8A 5AQSA 4AB0A 1BUPA 1T7AA 1FH3A 1NGHA 1LQQA 2QWOA 1MYNA 5AQXA 5BPNA 1ZUTA 2KGQA 4UADE 3D2FA 3GDQA 3FZFA 4IO8A 3LDQA 2LR3A 2JDQD 1NGAA 2KBHA 2SN3A 1CN2A 2KSKA 2QXLA 4UJ0A 1C55A 5AQTA 5F2RA 3CQXA 5AQHA 1C56A 1POIA 1I6FA 3FZLA 2LJMA 2V7ZA 2QWLA 1LQIA 3KOYA
chains in the Genus database with same CATH topology
2BUPA 3L6QA 5FPMA 2MBKA 2QWPA 5AQWA 5EY4A 3A8YA 5FPNA 3C7NB 3KVGA 1NGDA 2KHOA 3L4IA 3LDOA 2D56A 1S3XA 4H5RA 3C7NA 3LDNA 1NGFA 5AQKA 1NGGA 5AQRA 3LDLA 1NGEA 3QI7A 2QWRA 3FZMA 5AQIA 3KC6A 2K35A 3BK3C 1QQOA 3GL1A 5AQMA 2QWMA 5BN8A 3D2EB 5FPEA 1ATRA 2YILA 3FZHA 1BA0A 3D2EA 2QW9A 5BN9A 3L56A 5AQOA 1NGBA 1YUWA 1NGCA 3AY9A 4H5WA 3JXUA 5FPDA 1KAYA 5BPLA 3FE1A 1BA1A 1DKGD 3R2VA 1KAZA 5AQGA 2E2FA 1HPMA 1HJOA 4FL9A 2MN5A 5AQLA 5BPMA 5EVZA 2YIPA 3ATVA 1HX1A 3CW4A 5AQYA 5F1XA 3M3ZA 5AQZA 5AR0A 1QQNA 5EXWA 2GMOA 5F0XA 3D2FB 4KBOA 1NGIA 5AQJA 1QQMA 5AQVA 4FSVA 4H5TA 1NGJA 2QWNA 3I33A 2QWQA 4H5VA 3HSCA 2VY6A 3KHWA 2YIOA 2E8AA 3QFPA 1ATSA 3LDPA 5AQPA 2LN8A 3IUCA 5EX5A 3ATUA 5AQFA 4UAEF 1KAXA 4H5NA 2E88A 4HWIA 5AQNA 3QMLA 3SF4D 3QFUA 3FZKA 5AQQA 5AQUA 4GNIA 5AQSA 1BUPA 1NGHA 2QWOA 5AQXA 5BPNA 4UADE 3D2FA 3GDQA 3FZFA 4IO8A 3LDQA 2JDQD 1NGAA 2QXLA 5AQTA 5F2RA 3CQXA 5AQHA 1POIA 3FZLA 2V7ZA 2QWLA 4UAFE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KC6 A;  4UAE F;  2VY6 A;  3KHW A;  4UAD E;  2GMO A;  3L56 A;  3CW4 A;  3R2V A;  4UAF E;  2JDQ D; 
#chains in the Genus database with same CATH topology
 2BUP A;  2KJA A;  3L6Q A;  5FPM A;  1GPS A;  2MBK A;  1P0A A;  2QWP A;  3KP1 A;  5AQW A;  4CQK A;  5EY4 A;  2B68 A;  3A8Y A;  1I2U A;  5FPN A;  3C7N B;  2BRZ A;  3KVG A;  1NGD A;  2YC1 C;  2KHO A;  4KYP A;  1AYJ A;  1TI5 A;  3L4I A;  3LDO A;  2D56 A;  1S3X A;  1AHO A;  4H5R A;  1NH5 A;  3C7N A;  3KP0 A;  1DJT A;  3LDN A;  1NGF A;  2E0H A;  1L4V A;  5AQK A;  1JKZ A;  1NGG A;  2N2R A;  2E3G A;  1SN4 A;  3KOZ A;  3E7U X;  5AQR A;  3LDL A;  1NE5 A;  1NGE A;  1T1T A;  3QI7 A;  2QWR A;  1I6G A;  2B3C A;  1OMY A;  3FZM A;  1T7E A;  5AQI A;  3KOX A;  1ZVG A;  2NY8 X;  3KC6 A;  2K35 A;  2I61 A;  3KOW A;  3BK3 C;  1QQO A;  3GL1 A;  1JZA A;  1OZZ A;  1WWN A;  5AQM A;  2N69 A;  1N4N A;  2QWM A;  1P00 A;  5BN8 A;  3D2E B;  1WMT A;  1ZU3 A;  5FPE A;  1ATR A;  1PTX A;  2YIL A;  1ZYV A;  1BA0 A;  3D2E A;  2KBK A;  2QW9 A;  3FZH A;  3L56 A;  5AQO A;  5BN9 A;  1BMR A;  1NGB A;  1YUW A;  1NGC A;  1UGL A;  2E3F A;  3AY9 A;  1WT7 A;  1SN1 A;  1T7B A;  1GPT A;  4H5W A;  4HE7 A;  1B7D A;  3JXU A;  3GKU A;  1KAY A;  5FPD A;  5BPL A;  3FE1 A;  5KK4 A;  1BRZ A;  1BA1 A;  2LY5 A;  1DKG D;  3R2V A;  1KAZ A;  2GL1 A;  1JZB A;  4AAZ A;  5AQG A;  2MZ0 A;  2LY6 A;  2E2F A;  2YBR C;  1HPM A;  1HJO A;  1JXC A;  1LQH A;  4FL9 A;  1SNB A;  1SEG A;  2MN5 A;  5AQL A;  5BPM A;  5EVZ A;  2YIP A;  5CY0 A;  3ATV A;  4AEI A;  2KYQ A;  1KV0 A;  2N66 A;  1HX1 A;  3CW4 A;  2LI7 A;  5AQY A;  5F1X A;  1ICA A;  2LJ7 A;  3M3Z A;  1ZFU A;  3PSM A;  5AR0 A;  5AQZ A;  2ASC A;  1QQN A;  1XRS B;  4UAF E;  5EXW A;  1PE4 A;  4HHF A;  2GMO A;  5F0X A;  1PX9 A;  4V1D C;  3D2F B;  1VNA A;  4KBO A;  1NPI A;  1NRA A;  1NGI A;  5AQJ A;  1BCG A;  1QQM A;  5AQV A;  2KBJ A;  4FSV A;  1B3C A;  4H5T A;  1NGJ A;  2QWN A;  3I33 A;  2YEO A;  2QWQ A;  1MR4 A;  2LT8 A;  4H5V A;  1VNB A;  1DQ7 A;  3HSC A;  2VY6 A;  3KHW A;  1CHZ A;  2KPY A;  2M8B B;  1T0Z A;  2YIO A;  1I2V A;  2E8A A;  3QFP A;  1ATS A;  2ATB A;  3E7R L;  3LDP A;  5AQP A;  2LN8 A;  2N2Q A;  1NRB A;  3IUC A;  5EX5 A;  3ATU A;  5AQF A;  2A7T A;  1ZVE A;  1ZYW A;  4UAE F;  1KAX A;  2G2K A;  2LKB A;  1K8B A;  4H5N A;  2E88 A;  4HWI A;  5AQN A;  2NY9 X;  3QML A;  3SF4 D;  3QFU A;  3FZK A;  5AQQ A;  5AQU A;  4GNI A;  1BK8 A;  5AQS A;  4AB0 A;  1BUP A;  1T7A A;  1FH3 A;  1NGH A;  1LQQ A;  2QWO A;  1MYN A;  5AQX A;  5BPN A;  1ZUT A;  2KGQ A;  4UAD E;  3D2F A;  3GDQ A;  3FZF A;  4IO8 A;  3LDQ A;  2LR3 A;  2JDQ D;  1NGA A;  2KBH A;  2SN3 A;  1CN2 A;  2KSK A;  2QXL A;  4UJ0 A;  1C55 A;  5AQT A;  5F2R A;  3CQX A;  5AQH A;  1C56 A;  1POI A;  1I6F A;  3FZL A;  2LJM A;  2V7Z A;  2QWL A;  1LQI A;  3KOY A; 
#chains in the Genus database with same CATH homology
 2BUP A;  3L6Q A;  5FPM A;  2MBK A;  2QWP A;  5AQW A;  5EY4 A;  3A8Y A;  5FPN A;  3C7N B;  3KVG A;  1NGD A;  2KHO A;  3L4I A;  3LDO A;  2D56 A;  1S3X A;  4H5R A;  3C7N A;  3LDN A;  1NGF A;  5AQK A;  1NGG A;  5AQR A;  3LDL A;  1NGE A;  3QI7 A;  2QWR A;  3FZM A;  5AQI A;  3KC6 A;  2K35 A;  3BK3 C;  1QQO A;  3GL1 A;  5AQM A;  2QWM A;  5BN8 A;  3D2E B;  5FPE A;  1ATR A;  2YIL A;  3FZH A;  1BA0 A;  3D2E A;  2QW9 A;  5BN9 A;  3L56 A;  5AQO A;  1NGB A;  1YUW A;  1NGC A;  3AY9 A;  4H5W A;  3JXU A;  5FPD A;  1KAY A;  5BPL A;  3FE1 A;  1BA1 A;  1DKG D;  3R2V A;  1KAZ A;  5AQG A;  2E2F A;  1HPM A;  1HJO A;  4FL9 A;  2MN5 A;  5AQL A;  5BPM A;  5EVZ A;  2YIP A;  3ATV A;  1HX1 A;  3CW4 A;  5AQY A;  5F1X A;  3M3Z A;  5AQZ A;  5AR0 A;  1QQN A;  5EXW A;  2GMO A;  5F0X A;  3D2F B;  4KBO A;  1NGI A;  5AQJ A;  1QQM A;  5AQV A;  4FSV A;  4H5T A;  1NGJ A;  2QWN A;  3I33 A;  2QWQ A;  4H5V A;  3HSC A;  2VY6 A;  3KHW A;  2YIO A;  2E8A A;  3QFP A;  1ATS A;  3LDP A;  5AQP A;  2LN8 A;  3IUC A;  5EX5 A;  3ATU A;  5AQF A;  4UAE F;  1KAX A;  4H5N A;  2E88 A;  4HWI A;  5AQN A;  3QML A;  3SF4 D;  3QFU A;  3FZK A;  5AQQ A;  5AQU A;  4GNI A;  5AQS A;  1BUP A;  1NGH A;  2QWO A;  5AQX A;  5BPN A;  4UAD E;  3D2F A;  3GDQ A;  3FZF A;  4IO8 A;  3LDQ A;  2JDQ D;  1NGA A;  2QXL A;  5AQT A;  5F2R A;  3CQX A;  5AQH A;  1POI A;  3FZL A;  2V7Z A;  2QWL A;  4UAF E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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