2NY8X

Nmr structure of antibacterial defensin def-aaa from the insect anopheles gambiae
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
40
structure length
40
Chain Sequence
ATCDLASGFGVGSSLCAAHCIARRYRGGYCNSKAVCVCRN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antimicrobial protein
molecule keywords defensin
publication title Rational design of peptides active against the gram positive bacteria Staphylococcus aureus
pubmed doi rcsb
source organism Anopheles gambiae
total genus 5
structure length 40
sequence length 40
ec nomenclature
pdb deposition date 2006-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF01097 Defensin_2 Arthropod defensin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 2ny8X00
4AB0A 1TI5A 1T0ZA 4CQKA 2KPYA 1MR4A 4KYPA 2LJ7A 4UJ0A 1P00A 2LJMA 1WMTA 1BCGA 1GPSA 1ICAA 2I61A 1JKZA 2N2QA 2NY8X 1B3CA 1OZZA 1T1TA 2B68A 1KV0A 2ATBA 2E0HA 2KBKA 3E7UX 1CHZA 2SN3A 5CY0A 1WT7A 1NRAA 1B7DA 2LI7A 1BK8A 2BRZA 1OMYA 1FH3A 1NRBA 2ASCA 1ZYWA 1NH5A 1AHOA 1I6FA 2GL1A 2LR3A 2YBRC 1C55A 2YEOA 1MYNA 1N4NA 1NPIA 2YC1C 1ZU3A 1NE5A 1LQHA 4HE7A 2B3CA 3E7RL 4HHFA 1SEGA 1PE4A 4AAZA 1C56A 2NY9X 1ZVEA 1AYJA 2E3FA 1VNAA 3PSMA 2KYQA 1GPTA 1ZVGA 1PX9A 1P0AA 1I6GA 1JXCA 1LQIA 1DQ7A 1JZBA 1DJTA 1LQQA 1T7EA 2N2RA 1JZAA 1ZUTA 2KSKA 1CN2A 2KJAA 1ZYVA 2N69A 2LY5A 1BRZA 2LT8A 2KBJA 1PTXA 1ZFUA 1I2VA 4AEIA 2KBHA 2N66A 1VNBA 1T7AA 5KK4A 4V1DC 1SN1A 2LKBA 1WWNA 2MZ0A 1SNBA 2KGQA 1I2UA 2A7TA 2E3GA 2M8BB 1SN4A 2LY6A 1BMRA 1L4VA 1T7BA
chains in the Genus database with same CATH superfamily
5BPMA 5AQKA 5AQMA 3M3ZA 1NGHA 1TI5A 1BUPA 4AB0A 4UAFE 1T0ZA 4CQKA 2KPYA 1MR4A 3FZKA 4KYPA 5AQZA 2LJ7A 2K35A 4UJ0A 3GKUA 4H5WA 2GMOA 1QQMA 1P00A 2LJMA 3L56A 1WMTA 3FE1A 3FZFA 3KVGA 5EVZA 1BCGA 1GPSA 1ICAA 1KAYA 3FZLA 2I61A 5AQLA 4H5RA 1JKZA 2N2QA 3R2VA 3A8YA 2NY8X 1QQNA 5AQXA 1B3CA 1OZZA 5AQIA 2YIOA 1T1TA 1BRZA 1NGJA 2B68A 5AQGA 1KV0A 1NGCA 5EX5A 1QQOA 5AQQA 2ATBA 4HWIA 1KAZA 2QXLA 3KOYA 2QWNA 2E0HA 4GNIA 5AQVA 1S3XA 2KBKA 2E2FA 2QWQA 3E7UX 3CQXA 4IO8A 1CHZA 2SN3A 4KBOA 5AQFA 5CY0A 2QW9A 1WT7A 2QWPA 2QWRA 5AR0A 5BN8A 4UADE 1NRAA 1B7DA 2LI7A 1NGFA 3QFUA 4H5VA 1BK8A 2BRZA 3HSCA 1OMYA 5AQPA 1K8BA 2V7ZA 1FH3A 1NRBA 2YILA 3CW4A 2ASCA 3D2FB 1HPMA 1ZYWA 5AQRA 3L4IA 1NH5A 1AHOA 1I6FA 5AQTA 5AQWA 2QWLA 2GL1A 3IUCA 1NGAA 2LR3A 2BUPA 3KOXA 5FPEA 3BK3C 2YBRC 3KP1A 3LDNA 3KHWA 1C55A 2YEOA 1MYNA 1N4NA 1NPIA 3SF4D 2YC1C 3LDOA 5FPMA 1ZU3A 1NE5A 3C7NB 1LQHA 4HE7A 3QFPA 3KC6A 2B3CA 3E7RL 1NGDA 4HHFA 5BN9A 1SEGA 1PE4A 2E88A 2LN8A 1C56A 4AAZA 5BPLA 2QWOA 2VY6A 1HX1A 2NY9X 1ZVEA 1AYJA 5FPNA 4H5NA 3ATVA 2E3FA 1KAXA 2KHOA 1VNAA 3PSMA 2KYQA 1GPTA 5EY4A 1ZVGA 1PX9A 2D56A 1P0AA 3LDQA 1I6GA 1NGIA 1JXCA 3D2EB 1LQIA 3D2FA 1DQ7A 4FSVA 1JZBA 1DJTA 1LQQA 3L6QA 5AQOA 1T7EA 2N2RA 1JZAA 1ZUTA 2KSKA 5AQJA 1CN2A 2KJAA 3KP0A 1NGGA 1ZYVA 3LDPA 4FL9A 2N69A 4H5TA 1UGLA 3ATUA 2E8AA 2LY5A 3GL1A 5F2RA 3KOWA 1NGEA 2G2KA 2LT8A 3AY9A 3C7NA 3I33A 1HJOA 2KBJA 5AQUA 1BA0A 5AQSA 1PTXA 1ZFUA 3FZMA 3JXUA 5EXWA 2QWMA 1I2VA 5AQYA 5F1XA 2YIPA 5BPNA 4AEIA 2KBHA 2N66A 1NGBA 1XRSB 1BA1A 2MBKA 1VNBA 1T7AA 2MN5A 1DKGD 3LDLA 5AQNA 5KK4A 5FPDA 4V1DC 1YUWA 3FZHA 1SN1A 2LKBA 4UAEF 1WWNA 3KOZA 3D2EA 2JDQD 2MZ0A 1SNBA 2KGQA 1I2UA 2A7TA 1ATSA 5AQHA 2E3GA 2M8BB 1SN4A 1POIA 5F0XA 2LY6A 3QMLA 1BMRA 3GDQA 1L4VA 3QI7A 1ATRA 1T7BA
chains in the Genus database with same CATH topology
4AB0A 1TI5A 1T0ZA 4CQKA 2KPYA 1MR4A 4KYPA 2LJ7A 4UJ0A 1P00A 2LJMA 1WMTA 1BCGA 1GPSA 1ICAA 2I61A 1JKZA 2N2QA 2NY8X 1B3CA 1OZZA 1T1TA 2B68A 1KV0A 2ATBA 2E0HA 2KBKA 3E7UX 1CHZA 2SN3A 5CY0A 1WT7A 1NRAA 1B7DA 2LI7A 1BK8A 2BRZA 1OMYA 1FH3A 1NRBA 2ASCA 1ZYWA 1NH5A 1AHOA 1I6FA 2GL1A 2LR3A 2YBRC 1C55A 2YEOA 1MYNA 1N4NA 1NPIA 2YC1C 1ZU3A 1NE5A 1LQHA 4HE7A 2B3CA 3E7RL 4HHFA 1SEGA 1PE4A 4AAZA 1C56A 2NY9X 1ZVEA 1AYJA 2E3FA 1VNAA 3PSMA 2KYQA 1GPTA 1ZVGA 1PX9A 1P0AA 1I6GA 1JXCA 1LQIA 1DQ7A 1JZBA 1DJTA 1LQQA 1T7EA 2N2RA 1JZAA 1ZUTA 2KSKA 1CN2A 2KJAA 1ZYVA 2N69A 2LY5A 1BRZA 2LT8A 2KBJA 1PTXA 1ZFUA 1I2VA 4AEIA 2KBHA 2N66A 1VNBA 1T7AA 5KK4A 4V1DC 1SN1A 2LKBA 1WWNA 2MZ0A 1SNBA 2KGQA 1I2UA 2A7TA 2E3GA 2M8BB 1SN4A 2LY6A 1BMRA 1L4VA 1T7BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AB0 A;  1TI5 A;  1T0Z A;  4CQK A;  2KPY A;  1MR4 A;  4KYP A;  2LJ7 A;  4UJ0 A;  1P00 A;  2LJM A;  1WMT A;  1BCG A;  1GPS A;  1ICA A;  2I61 A;  1JKZ A;  2N2Q A;  2NY8 X;  1B3C A;  1OZZ A;  1T1T A;  2B68 A;  1KV0 A;  2ATB A;  2E0H A;  2KBK A;  3E7U X;  1CHZ A;  2SN3 A;  5CY0 A;  1WT7 A;  1NRA A;  1B7D A;  2LI7 A;  1BK8 A;  2BRZ A;  1OMY A;  1FH3 A;  1NRB A;  2ASC A;  1ZYW A;  1NH5 A;  1AHO A;  1I6F A;  2GL1 A;  2LR3 A;  2YBR C;  1C55 A;  2YEO A;  1MYN A;  1N4N A;  1NPI A;  2YC1 C;  1ZU3 A;  1NE5 A;  1LQH A;  4HE7 A;  2B3C A;  3E7R L;  4HHF A;  1SEG A;  1PE4 A;  4AAZ A;  1C56 A;  2NY9 X;  1ZVE A;  1AYJ A;  2E3F A;  1VNA A;  3PSM A;  2KYQ A;  1GPT A;  1ZVG A;  1PX9 A;  1P0A A;  1I6G A;  1JXC A;  1LQI A;  1DQ7 A;  1JZB A;  1DJT A;  1LQQ A;  1T7E A;  2N2R A;  1JZA A;  1ZUT A;  2KSK A;  1CN2 A;  2KJA A;  1ZYV A;  2N69 A;  2LY5 A;  1BRZ A;  2LT8 A;  2KBJ A;  1PTX A;  1ZFU A;  1I2V A;  4AEI A;  2KBH A;  2N66 A;  1VNB A;  1T7A A;  5KK4 A;  4V1D C;  1SN1 A;  2LKB A;  1WWN A;  2MZ0 A;  1SNB A;  2KGQ A;  1I2U A;  2A7T A;  2E3G A;  2M8B B;  1SN4 A;  2LY6 A;  1BMR A;  1L4V A;  1T7B A; 
#chains in the Genus database with same CATH topology
 5BPM A;  5AQK A;  5AQM A;  3M3Z A;  1NGH A;  1TI5 A;  1BUP A;  4AB0 A;  4UAF E;  1T0Z A;  4CQK A;  2KPY A;  1MR4 A;  3FZK A;  4KYP A;  5AQZ A;  2LJ7 A;  2K35 A;  4UJ0 A;  3GKU A;  4H5W A;  2GMO A;  1QQM A;  1P00 A;  2LJM A;  3L56 A;  1WMT A;  3FE1 A;  3FZF A;  3KVG A;  5EVZ A;  1BCG A;  1GPS A;  1ICA A;  1KAY A;  3FZL A;  2I61 A;  5AQL A;  4H5R A;  1JKZ A;  2N2Q A;  3R2V A;  3A8Y A;  2NY8 X;  1QQN A;  5AQX A;  1B3C A;  1OZZ A;  5AQI A;  2YIO A;  1T1T A;  1BRZ A;  1NGJ A;  2B68 A;  5AQG A;  1KV0 A;  1NGC A;  5EX5 A;  1QQO A;  5AQQ A;  2ATB A;  4HWI A;  1KAZ A;  2QXL A;  3KOY A;  2QWN A;  2E0H A;  4GNI A;  5AQV A;  1S3X A;  2KBK A;  2E2F A;  2QWQ A;  3E7U X;  3CQX A;  4IO8 A;  1CHZ A;  2SN3 A;  4KBO A;  5AQF A;  5CY0 A;  2QW9 A;  1WT7 A;  2QWP A;  2QWR A;  5AR0 A;  5BN8 A;  4UAD E;  1NRA A;  1B7D A;  2LI7 A;  1NGF A;  3QFU A;  4H5V A;  1BK8 A;  2BRZ A;  3HSC A;  1OMY A;  5AQP A;  1K8B A;  2V7Z A;  1FH3 A;  1NRB A;  2YIL A;  3CW4 A;  2ASC A;  3D2F B;  1HPM A;  1ZYW A;  5AQR A;  3L4I A;  1NH5 A;  1AHO A;  1I6F A;  5AQT A;  5AQW A;  2QWL A;  2GL1 A;  3IUC A;  1NGA A;  2LR3 A;  2BUP A;  3KOX A;  5FPE A;  3BK3 C;  2YBR C;  3KP1 A;  3LDN A;  3KHW A;  1C55 A;  2YEO A;  1MYN A;  1N4N A;  1NPI A;  3SF4 D;  2YC1 C;  3LDO A;  5FPM A;  1ZU3 A;  1NE5 A;  3C7N B;  1LQH A;  4HE7 A;  3QFP A;  3KC6 A;  2B3C A;  3E7R L;  1NGD A;  4HHF A;  5BN9 A;  1SEG A;  1PE4 A;  2E88 A;  2LN8 A;  1C56 A;  4AAZ A;  5BPL A;  2QWO A;  2VY6 A;  1HX1 A;  2NY9 X;  1ZVE A;  1AYJ A;  5FPN A;  4H5N A;  3ATV A;  2E3F A;  1KAX A;  2KHO A;  1VNA A;  3PSM A;  2KYQ A;  1GPT A;  5EY4 A;  1ZVG A;  1PX9 A;  2D56 A;  1P0A A;  3LDQ A;  1I6G A;  1NGI A;  1JXC A;  3D2E B;  1LQI A;  3D2F A;  1DQ7 A;  4FSV A;  1JZB A;  1DJT A;  1LQQ A;  3L6Q A;  5AQO A;  1T7E A;  2N2R A;  1JZA A;  1ZUT A;  2KSK A;  5AQJ A;  1CN2 A;  2KJA A;  3KP0 A;  1NGG A;  1ZYV A;  3LDP A;  4FL9 A;  2N69 A;  4H5T A;  1UGL A;  3ATU A;  2E8A A;  2LY5 A;  3GL1 A;  5F2R A;  3KOW A;  1NGE A;  2G2K A;  2LT8 A;  3AY9 A;  3C7N A;  3I33 A;  1HJO A;  2KBJ A;  5AQU A;  1BA0 A;  5AQS A;  1PTX A;  1ZFU A;  3FZM A;  3JXU A;  5EXW A;  2QWM A;  1I2V A;  5AQY A;  5F1X A;  2YIP A;  5BPN A;  4AEI A;  2KBH A;  2N66 A;  1NGB A;  1XRS B;  1BA1 A;  2MBK A;  1VNB A;  1T7A A;  2MN5 A;  1DKG D;  3LDL A;  5AQN A;  5KK4 A;  5FPD A;  4V1D C;  1YUW A;  3FZH A;  1SN1 A;  2LKB A;  4UAE F;  1WWN A;  3KOZ A;  3D2E A;  2JDQ D;  2MZ0 A;  1SNB A;  2KGQ A;  1I2U A;  2A7T A;  1ATS A;  5AQH A;  2E3G A;  2M8B B;  1SN4 A;  1POI A;  5F0X A;  2LY6 A;  3QML A;  1BMR A;  3GDQ A;  1L4V A;  3QI7 A;  1ATR A;  1T7B A; 
#chains in the Genus database with same CATH homology
 4AB0 A;  1TI5 A;  1T0Z A;  4CQK A;  2KPY A;  1MR4 A;  4KYP A;  2LJ7 A;  4UJ0 A;  1P00 A;  2LJM A;  1WMT A;  1BCG A;  1GPS A;  1ICA A;  2I61 A;  1JKZ A;  2N2Q A;  2NY8 X;  1B3C A;  1OZZ A;  1T1T A;  2B68 A;  1KV0 A;  2ATB A;  2E0H A;  2KBK A;  3E7U X;  1CHZ A;  2SN3 A;  5CY0 A;  1WT7 A;  1NRA A;  1B7D A;  2LI7 A;  1BK8 A;  2BRZ A;  1OMY A;  1FH3 A;  1NRB A;  2ASC A;  1ZYW A;  1NH5 A;  1AHO A;  1I6F A;  2GL1 A;  2LR3 A;  2YBR C;  1C55 A;  2YEO A;  1MYN A;  1N4N A;  1NPI A;  2YC1 C;  1ZU3 A;  1NE5 A;  1LQH A;  4HE7 A;  2B3C A;  3E7R L;  4HHF A;  1SEG A;  1PE4 A;  4AAZ A;  1C56 A;  2NY9 X;  1ZVE A;  1AYJ A;  2E3F A;  1VNA A;  3PSM A;  2KYQ A;  1GPT A;  1ZVG A;  1PX9 A;  1P0A A;  1I6G A;  1JXC A;  1LQI A;  1DQ7 A;  1JZB A;  1DJT A;  1LQQ A;  1T7E A;  2N2R A;  1JZA A;  1ZUT A;  2KSK A;  1CN2 A;  2KJA A;  1ZYV A;  2N69 A;  2LY5 A;  1BRZ A;  2LT8 A;  2KBJ A;  1PTX A;  1ZFU A;  1I2V A;  4AEI A;  2KBH A;  2N66 A;  1VNB A;  1T7A A;  5KK4 A;  4V1D C;  1SN1 A;  2LKB A;  1WWN A;  2MZ0 A;  1SNB A;  2KGQ A;  1I2U A;  2A7T A;  2E3G A;  2M8B B;  1SN4 A;  2LY6 A;  1BMR A;  1L4V A;  1T7B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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