1GPSA

Solution structure of gamma 1-h and gamma 1-p thionins from barley and wheat endosperm determined by 1h-nmr: a structural motif common to toxic arthropod proteins
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
47
structure length
47
Chain Sequence
KICRRRSAGFKGPCMSNKNCAQVCQQEGWGGGNCDGPFRRCKCIRQC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Plant toxin
molecule keywords GAMMA-1-P THIONIN
publication title Solution structure of gamma 1-H and gamma 1-P thionins from barley and wheat endosperm determined by 1H-NMR: a structural motif common to toxic arthropod proteins.
pubmed doi rcsb
source organism Triticum turgidum
total genus 10
structure length 47
sequence length 47
ec nomenclature
pdb deposition date 1992-07-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00304 Gamma-thionin Gamma-thionin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1gpsA00
1T7EA 1BRZA 1MYNA 2N2RA 1C56A 4AAZA 1B3CA 2A7TA 2KPYA 1KV0A 2KYQA 2YC1C 2ASCA 1PX9A 1AYJA 2YBRC 4AB0A 1NRBA 1T7AA 1WT7A 1LQIA 1GPSA 4HE7A 1I2UA 1CHZA 1ZVGA 2N66A 1DQ7A 1I6FA 2E0HA 2YEOA 1ZU3A 2M8BB 2LY6A 2GL1A 1SN1A 1WWNA 1TI5A 2B68A 2LKBA 1VNAA 1JZBA 2LT8A 1NE5A 2LJ7A 2B3CA 2NY8X 2SN3A 1DJTA 1MR4A 1NRAA 1ZFUA 1CN2A 2BRZA 2KJAA 5KK4A 1ZUTA 2E3FA 2MZ0A 1FH3A 4HHFA 2KBHA 2KSKA 1T0ZA 1LQQA 1ICAA 3E7UX 2KGQA 1LQHA 2LI7A 1BK8A 1PTXA 1ZYVA 1JXCA 1SNBA 1C55A 2LR3A 5CY0A 1VNBA 1SN4A 2NY9X 1I2VA 2LJMA 2N2QA 1AHOA 4UJ0A 1T1TA 1BCGA 1BMRA 4AEIA 1JKZA 1NPIA 1ZVEA 1N4NA 1OMYA 4V1DC 1P0AA 4KYPA 2KBKA 4CQKA 1JZAA 1L4VA 2I61A 3PSMA 3E7RL 1ZYWA 1NH5A 1OZZA 1PE4A 1GPTA 1P00A 1I6GA 1WMTA 1B7DA 1SEGA 2LY5A 2E3GA 1T7BA 2N69A 2KBJA 2ATBA
chains in the Genus database with same CATH superfamily
1T7EA 4H5NA 3L4IA 5BPLA 2D56A 2LN8A 5EVZA 5AQTA 1BRZA 1MYNA 2N2RA 5EY4A 1C56A 2QXLA 5AQYA 5AQSA 3LDPA 5AQVA 4AAZA 3KP1A 1B3CA 1S3XA 2A7TA 3D2FB 4KBOA 1HJOA 2KPYA 1KAYA 1NGGA 1KV0A 2KHOA 2KYQA 3GDQA 5AQLA 2YC1C 2ASCA 1KAXA 5FPNA 2GMOA 2QWRA 1PX9A 3C7NA 2YBRC 3KVGA 1AYJA 5F0XA 3M3ZA 4AB0A 1NRBA 1YUWA 1T7AA 1WT7A 5AQXA 3R2VA 1LQIA 4H5VA 4GNIA 1DKGD 2QWNA 3ATVA 4HE7A 5F2RA 4UADE 1GPSA 1I2UA 1CHZA 1NGAA 1ZVGA 2E88A 1NGEA 2N66A 1DQ7A 1I6FA 2MN5A 1K8BA 1NGJA 2E0HA 3D2EB 2YEOA 1ZU3A 4H5WA 2M8BB 5AR0A 2JDQD 2LY6A 1BA0A 3QI7A 2MBKA 4FL9A 5FPDA 2GL1A 1NGHA 1SN1A 1WWNA 1HPMA 1TI5A 2B68A 2LKBA 1VNAA 5AQWA 1HX1A 1JZBA 2QWQA 2LT8A 5AQIA 3QFPA 1NE5A 2LJ7A 1XRSB 2B3CA 3KHWA 5AQQA 2NY8X 2SN3A 1ATRA 1DJTA 1MR4A 3FZLA 5BPNA 5AQRA 1QQOA 1NRAA 1QQMA 3KOYA 5AQZA 1ZFUA 1NGIA 3HSCA 3IUCA 1CN2A 3C7NB 1POIA 2BRZA 2KJAA 4UAFE 5KK4A 2K35A 2QWOA 1BUPA 1ZUTA 2E3FA 2MZ0A 3AY9A 4H5RA 5BN8A 3D2FA 4UAEF 3CQXA 3QMLA 5AQKA 1FH3A 5AQHA 5AQPA 3FZFA 3KOWA 4HHFA 2KBHA 2V7ZA 4HWIA 2KSKA 1NGCA 1UGLA 1T0ZA 1LQQA 1ICAA 1NGDA 5EXWA 3ATUA 3E7UX 3GKUA 2KGQA 3FZKA 2YILA 1LQHA 3QFUA 4IO8A 5AQJA 5AQFA 2LI7A 1ATSA 1PTXA 1BK8A 3LDQA 3A8YA 1QQNA 2BUPA 5FPMA 5AQMA 1ZYVA 2G2KA 1JXCA 1SNBA 5EX5A 1C55A 2QWPA 2LR3A 3D2EA 5CY0A 3LDLA 5AQUA 1VNBA 2QW9A 3GL1A 1SN4A 2NY9X 1I2VA 3LDNA 4H5TA 2LJMA 3LDOA 1NGFA 3KP0A 2N2QA 2YIOA 1AHOA 3BK3C 1T1TA 4UJ0A 2QWLA 3KC6A 1BCGA 5BN9A 1BMRA 4AEIA 1JKZA 1NPIA 1ZVEA 3L6QA 1N4NA 1OMYA 1NGBA 4V1DC 1P0AA 2VY6A 4KYPA 1BA1A 2KBKA 3FE1A 3KOXA 3SF4D 4CQKA 2E8AA 1JZAA 1KAZA 5BPMA 2I61A 3PSMA 1L4VA 3E7RL 4FSVA 5AQGA 1ZYWA 3JXUA 2E2FA 1NH5A 1OZZA 1PE4A 2YIPA 1P00A 3I33A 3L56A 5F1XA 1GPTA 1WMTA 1B7DA 2QWMA 3FZHA 1I6GA 5AQOA 5AQNA 1SEGA 2LY5A 3KOZA 5FPEA 2E3GA 1T7BA 2N69A 3FZMA 2KBJA 3CW4A 2ATBA
chains in the Genus database with same CATH topology
1T7EA 1BRZA 1MYNA 2N2RA 1C56A 4AAZA 1B3CA 2A7TA 2KPYA 1KV0A 2KYQA 2YC1C 2ASCA 1PX9A 1AYJA 2YBRC 4AB0A 1NRBA 1T7AA 1WT7A 1LQIA 1GPSA 4HE7A 1I2UA 1CHZA 1ZVGA 2N66A 1DQ7A 1I6FA 2E0HA 2YEOA 1ZU3A 2M8BB 2LY6A 2GL1A 1SN1A 1WWNA 1TI5A 2B68A 2LKBA 1VNAA 1JZBA 2LT8A 1NE5A 2LJ7A 2B3CA 2NY8X 2SN3A 1DJTA 1MR4A 1NRAA 1ZFUA 1CN2A 2BRZA 2KJAA 5KK4A 1ZUTA 2E3FA 2MZ0A 1FH3A 4HHFA 2KBHA 2KSKA 1T0ZA 1LQQA 1ICAA 3E7UX 2KGQA 1LQHA 2LI7A 1BK8A 1PTXA 1ZYVA 1JXCA 1SNBA 1C55A 2LR3A 5CY0A 1VNBA 1SN4A 2NY9X 1I2VA 2LJMA 2N2QA 1AHOA 4UJ0A 1T1TA 1BCGA 1BMRA 4AEIA 1JKZA 1NPIA 1ZVEA 1N4NA 1OMYA 4V1DC 1P0AA 4KYPA 2KBKA 4CQKA 1JZAA 1L4VA 2I61A 3PSMA 3E7RL 1ZYWA 1NH5A 1OZZA 1PE4A 1GPTA 1P00A 1I6GA 1WMTA 1B7DA 1SEGA 2LY5A 2E3GA 1T7BA 2N69A 2KBJA 2ATBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1T7E A;  1BRZ A;  1MYN A;  2N2R A;  1C56 A;  4AAZ A;  1B3C A;  2A7T A;  2KPY A;  1KV0 A;  2KYQ A;  2YC1 C;  2ASC A;  1PX9 A;  1AYJ A;  2YBR C;  4AB0 A;  1NRB A;  1T7A A;  1WT7 A;  1LQI A;  1GPS A;  4HE7 A;  1I2U A;  1CHZ A;  1ZVG A;  2N66 A;  1DQ7 A;  1I6F A;  2E0H A;  2YEO A;  1ZU3 A;  2M8B B;  2LY6 A;  2GL1 A;  1SN1 A;  1WWN A;  1TI5 A;  2B68 A;  2LKB A;  1VNA A;  1JZB A;  2LT8 A;  1NE5 A;  2LJ7 A;  2B3C A;  2NY8 X;  2SN3 A;  1DJT A;  1MR4 A;  1NRA A;  1ZFU A;  1CN2 A;  2BRZ A;  2KJA A;  5KK4 A;  1ZUT A;  2E3F A;  2MZ0 A;  1FH3 A;  4HHF A;  2KBH A;  2KSK A;  1T0Z A;  1LQQ A;  1ICA A;  3E7U X;  2KGQ A;  1LQH A;  2LI7 A;  1BK8 A;  1PTX A;  1ZYV A;  1JXC A;  1SNB A;  1C55 A;  2LR3 A;  5CY0 A;  1VNB A;  1SN4 A;  2NY9 X;  1I2V A;  2LJM A;  2N2Q A;  1AHO A;  4UJ0 A;  1T1T A;  1BCG A;  1BMR A;  4AEI A;  1JKZ A;  1NPI A;  1ZVE A;  1N4N A;  1OMY A;  4V1D C;  1P0A A;  4KYP A;  2KBK A;  4CQK A;  1JZA A;  1L4V A;  2I61 A;  3PSM A;  3E7R L;  1ZYW A;  1NH5 A;  1OZZ A;  1PE4 A;  1GPT A;  1P00 A;  1I6G A;  1WMT A;  1B7D A;  1SEG A;  2LY5 A;  2E3G A;  1T7B A;  2N69 A;  2KBJ A;  2ATB A; 
#chains in the Genus database with same CATH topology
 1T7E A;  4H5N A;  3L4I A;  5BPL A;  2D56 A;  2LN8 A;  5EVZ A;  5AQT A;  1BRZ A;  1MYN A;  2N2R A;  5EY4 A;  1C56 A;  2QXL A;  5AQY A;  5AQS A;  3LDP A;  5AQV A;  4AAZ A;  3KP1 A;  1B3C A;  1S3X A;  2A7T A;  3D2F B;  4KBO A;  1HJO A;  2KPY A;  1KAY A;  1NGG A;  1KV0 A;  2KHO A;  2KYQ A;  3GDQ A;  5AQL A;  2YC1 C;  2ASC A;  1KAX A;  5FPN A;  2GMO A;  2QWR A;  1PX9 A;  3C7N A;  2YBR C;  3KVG A;  1AYJ A;  5F0X A;  3M3Z A;  4AB0 A;  1NRB A;  1YUW A;  1T7A A;  1WT7 A;  5AQX A;  3R2V A;  1LQI A;  4H5V A;  4GNI A;  1DKG D;  2QWN A;  3ATV A;  4HE7 A;  5F2R A;  4UAD E;  1GPS A;  1I2U A;  1CHZ A;  1NGA A;  1ZVG A;  2E88 A;  1NGE A;  2N66 A;  1DQ7 A;  1I6F A;  2MN5 A;  1K8B A;  1NGJ A;  2E0H A;  3D2E B;  2YEO A;  1ZU3 A;  4H5W A;  2M8B B;  5AR0 A;  2JDQ D;  2LY6 A;  1BA0 A;  3QI7 A;  2MBK A;  4FL9 A;  5FPD A;  2GL1 A;  1NGH A;  1SN1 A;  1WWN A;  1HPM A;  1TI5 A;  2B68 A;  2LKB A;  1VNA A;  5AQW A;  1HX1 A;  1JZB A;  2QWQ A;  2LT8 A;  5AQI A;  3QFP A;  1NE5 A;  2LJ7 A;  1XRS B;  2B3C A;  3KHW A;  5AQQ A;  2NY8 X;  2SN3 A;  1ATR A;  1DJT A;  1MR4 A;  3FZL A;  5BPN A;  5AQR A;  1QQO A;  1NRA A;  1QQM A;  3KOY A;  5AQZ A;  1ZFU A;  1NGI A;  3HSC A;  3IUC A;  1CN2 A;  3C7N B;  1POI A;  2BRZ A;  2KJA A;  4UAF E;  5KK4 A;  2K35 A;  2QWO A;  1BUP A;  1ZUT A;  2E3F A;  2MZ0 A;  3AY9 A;  4H5R A;  5BN8 A;  3D2F A;  4UAE F;  3CQX A;  3QML A;  5AQK A;  1FH3 A;  5AQH A;  5AQP A;  3FZF A;  3KOW A;  4HHF A;  2KBH A;  2V7Z A;  4HWI A;  2KSK A;  1NGC A;  1UGL A;  1T0Z A;  1LQQ A;  1ICA A;  1NGD A;  5EXW A;  3ATU A;  3E7U X;  3GKU A;  2KGQ A;  3FZK A;  2YIL A;  1LQH A;  3QFU A;  4IO8 A;  5AQJ A;  5AQF A;  2LI7 A;  1ATS A;  1PTX A;  1BK8 A;  3LDQ A;  3A8Y A;  1QQN A;  2BUP A;  5FPM A;  5AQM A;  1ZYV A;  2G2K A;  1JXC A;  1SNB A;  5EX5 A;  1C55 A;  2QWP A;  2LR3 A;  3D2E A;  5CY0 A;  3LDL A;  5AQU A;  1VNB A;  2QW9 A;  3GL1 A;  1SN4 A;  2NY9 X;  1I2V A;  3LDN A;  4H5T A;  2LJM A;  3LDO A;  1NGF A;  3KP0 A;  2N2Q A;  2YIO A;  1AHO A;  3BK3 C;  1T1T A;  4UJ0 A;  2QWL A;  3KC6 A;  1BCG A;  5BN9 A;  1BMR A;  4AEI A;  1JKZ A;  1NPI A;  1ZVE A;  3L6Q A;  1N4N A;  1OMY A;  1NGB A;  4V1D C;  1P0A A;  2VY6 A;  4KYP A;  1BA1 A;  2KBK A;  3FE1 A;  3KOX A;  3SF4 D;  4CQK A;  2E8A A;  1JZA A;  1KAZ A;  5BPM A;  2I61 A;  3PSM A;  1L4V A;  3E7R L;  4FSV A;  5AQG A;  1ZYW A;  3JXU A;  2E2F A;  1NH5 A;  1OZZ A;  1PE4 A;  2YIP A;  1P00 A;  3I33 A;  3L56 A;  5F1X A;  1GPT A;  1WMT A;  1B7D A;  2QWM A;  3FZH A;  1I6G A;  5AQO A;  5AQN A;  1SEG A;  2LY5 A;  3KOZ A;  5FPE A;  2E3G A;  1T7B A;  2N69 A;  3FZM A;  2KBJ A;  3CW4 A;  2ATB A; 
#chains in the Genus database with same CATH homology
 1T7E A;  1BRZ A;  1MYN A;  2N2R A;  1C56 A;  4AAZ A;  1B3C A;  2A7T A;  2KPY A;  1KV0 A;  2KYQ A;  2YC1 C;  2ASC A;  1PX9 A;  1AYJ A;  2YBR C;  4AB0 A;  1NRB A;  1T7A A;  1WT7 A;  1LQI A;  1GPS A;  4HE7 A;  1I2U A;  1CHZ A;  1ZVG A;  2N66 A;  1DQ7 A;  1I6F A;  2E0H A;  2YEO A;  1ZU3 A;  2M8B B;  2LY6 A;  2GL1 A;  1SN1 A;  1WWN A;  1TI5 A;  2B68 A;  2LKB A;  1VNA A;  1JZB A;  2LT8 A;  1NE5 A;  2LJ7 A;  2B3C A;  2NY8 X;  2SN3 A;  1DJT A;  1MR4 A;  1NRA A;  1ZFU A;  1CN2 A;  2BRZ A;  2KJA A;  5KK4 A;  1ZUT A;  2E3F A;  2MZ0 A;  1FH3 A;  4HHF A;  2KBH A;  2KSK A;  1T0Z A;  1LQQ A;  1ICA A;  3E7U X;  2KGQ A;  1LQH A;  2LI7 A;  1BK8 A;  1PTX A;  1ZYV A;  1JXC A;  1SNB A;  1C55 A;  2LR3 A;  5CY0 A;  1VNB A;  1SN4 A;  2NY9 X;  1I2V A;  2LJM A;  2N2Q A;  1AHO A;  4UJ0 A;  1T1T A;  1BCG A;  1BMR A;  4AEI A;  1JKZ A;  1NPI A;  1ZVE A;  1N4N A;  1OMY A;  4V1D C;  1P0A A;  4KYP A;  2KBK A;  4CQK A;  1JZA A;  1L4V A;  2I61 A;  3PSM A;  3E7R L;  1ZYW A;  1NH5 A;  1OZZ A;  1PE4 A;  1GPT A;  1P00 A;  1I6G A;  1WMT A;  1B7D A;  1SEG A;  2LY5 A;  2E3G A;  1T7B A;  2N69 A;  2KBJ A;  2ATB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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