3PSMA

.98a crystal structure of a dimeric plant defensin spe10
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
47
structure length
47
Chain Sequence
KTCENLADTFRGPCFTDGSCDDHCKNKEHLIKGRCRDDFRCWCTRNC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antimicrobial protein
publication title 0.98A crystal structure of a dimeric plant defensin SPE10
rcsb
molecule keywords Defensin
total genus 11
structure length 47
sequence length 47
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-12-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00304 Gamma-thionin Gamma-thionin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 3psmA00
1PE4A 1SEGA 3PSMA 2KYQA 1LQHA 1PX9A 2E3FA 1DJTA 1T0ZA 2BRZA 1WT7A 1NPIA 1TI5A 1I2VA 2N2QA 5CY0A 2KPYA 2LKBA 5KK4A 1I2UA 2YEOA 2E3GA 1NE5A 1ZUTA 4AEIA 2LY5A 1ZFUA 1KV0A 1WMTA 1GPTA 2M8BB 2NY9X 2LI7A 2LY6A 1JZBA 1NRBA 4HE7A 4HHFA 2B68A 1SN4A 2N2RA 1B7DA 1NH5A 1T7AA 2KBKA 2MZ0A 4AB0A 1T1TA 1JZAA 2KGQA 2LJMA 2N66A 2LT8A 1SN1A 1P00A 1VNBA 1JKZA 1AHOA 2LJ7A 1BCGA 1N4NA 1MYNA 2LR3A 1LQIA 2A7TA 1SNBA 1CHZA 3E7UX 4V1DC 1I6FA 2B3CA 2KBHA 2GL1A 1PTXA 1WWNA 1VNAA 1AYJA 1B3CA 2ATBA 1MR4A 1ICAA 1JXCA 2KBJA 2I61A 2E0HA 1DQ7A 1ZU3A 2KJAA 1T7BA 3E7RL 1FH3A 1T7EA 1ZVEA 1BMRA 1BK8A 1ZYWA 4KYPA 1CN2A 2SN3A 2KSKA 4CQKA 1BRZA 2NY8X 1LQQA 1P0AA 1ZYVA 1OMYA 2ASCA 4AAZA 2YC1C 2YBRC 1NRAA 2N69A 1C55A 1L4VA 1GPSA 4UJ0A 1C56A 1I6GA 1OZZA 1ZVGA
chains in the Genus database with same CATH superfamily
3KOYA 2QWLA 1PE4A 1SEGA 3FZLA 3L6QA 3PSMA 1NGCA 3QI7A 4KBOA 2KYQA 5AQNA 2KHOA 1LQHA 2QWQA 3ATVA 1NGHA 1PX9A 2E3FA 2G2KA 1DJTA 3LDPA 1HPMA 4H5VA 1T0ZA 2E8AA 2BRZA 5AQSA 5AQZA 1WT7A 3GDQA 5F0XA 1NPIA 2YIOA 1ATRA 1QQNA 5AQWA 1S3XA 4HWIA 1NGGA 1TI5A 1I2VA 2N2QA 5EY4A 5CY0A 1NGIA 5FPEA 3GL1A 2KPYA 2LKBA 4FL9A 5AQIA 5KK4A 1I2UA 2YEOA 3GKUA 2E3GA 3KOXA 1K8BA 3LDNA 2QWMA 1NE5A 1QQOA 1ZUTA 5AQJA 2LY5A 1ZFUA 2V7ZA 3L4IA 5AQOA 4AEIA 1KV0A 1WMTA 4H5RA 1YUWA 1NGDA 3HSCA 3JXUA 3QMLA 5AQQA 1GPTA 2M8BB 2NY9X 4H5NA 2LI7A 2E2FA 2LY6A 5AQTA 3SF4D 1JZBA 1NRBA 3LDOA 4FSVA 4HE7A 1DKGD 2B68A 2YIPA 3AY9A 3LDLA 4HHFA 5BPMA 2E88A 1SN4A 2N2RA 1B7DA 1NH5A 1T7AA 2KBKA 2MZ0A 1XRSB 4AB0A 1T1TA 3I33A 3LDQA 4GNIA 1JZAA 2BUPA 2KGQA 2LJMA 2QWPA 4H5TA 4IO8A 2N66A 2LT8A 1SN1A 1P00A 1VNBA 1JKZA 1AHOA 2LJ7A 2K35A 5AQGA 1BCGA 1KAXA 3FZMA 1BUPA 3IUCA 1N4NA 1MYNA 2LR3A 1KAZA 1LQIA 2A7TA 3L56A 5AQVA 3D2FA 3KHWA 1SNBA 3CW4A 3CQXA 2QWOA 3M3ZA 5AQXA 1HX1A 3FZKA 5F1XA 1CHZA 1BA1A 5FPNA 3E7UX 4V1DC 1I6FA 1POIA 4H5WA 2B3CA 2KBHA 2GL1A 3QFUA 1HJOA 1PTXA 1WWNA 5F2RA 5BN8A 1VNAA 2QXLA 3KP0A 5EX5A 1AYJA 5FPMA 5AQYA 3FE1A 1B3CA 3BK3C 3D2FB 2ATBA 5AQHA 1MR4A 1ICAA 5FPDA 3D2EA 1JXCA 2KBJA 2I61A 2E0HA 5EVZA 1DQ7A 2QW9A 1ZU3A 2KJAA 1NGFA 1T7BA 5AQFA 5AQPA 5EXWA 2JDQD 3R2VA 2D56A 4UADE 5AQLA 1BA0A 3E7RL 5BPNA 1FH3A 1T7EA 1UGLA 1ZVEA 2MN5A 2QWNA 2YILA 3KOWA 1BMRA 2MBKA 3KC6A 1ZYWA 4UAFE 5BN9A 1BK8A 1QQMA 4KYPA 5AQRA 4UAEF 3FZFA 3D2EB 1ATSA 5AQMA 1CN2A 5AR0A 1NGBA 2SN3A 3C7NB 1KAYA 2KSKA 5AQUA 3KP1A 3FZHA 4CQKA 3ATUA 3KVGA 1BRZA 2NY8X 1LQQA 1NGAA 1P0AA 1ZYVA 1OMYA 2ASCA 3QFPA 2GMOA 4AAZA 1NGJA 2YC1C 3A8YA 2YBRC 5BPLA 1NRAA 5AQKA 1NGEA 2N69A 1C55A 1L4VA 2LN8A 2QWRA 1GPSA 4UJ0A 1C56A 2VY6A 3C7NA 1I6GA 3KOZA 1OZZA 1ZVGA
chains in the Genus database with same CATH topology
1PE4A 1SEGA 3PSMA 2KYQA 1LQHA 1PX9A 2E3FA 1DJTA 1T0ZA 2BRZA 1WT7A 1NPIA 1TI5A 1I2VA 2N2QA 5CY0A 2KPYA 2LKBA 5KK4A 1I2UA 2YEOA 2E3GA 1NE5A 1ZUTA 4AEIA 2LY5A 1ZFUA 1KV0A 1WMTA 1GPTA 2M8BB 2NY9X 2LI7A 2LY6A 1JZBA 1NRBA 4HE7A 4HHFA 2B68A 1SN4A 2N2RA 1B7DA 1NH5A 1T7AA 2KBKA 2MZ0A 4AB0A 1T1TA 1JZAA 2KGQA 2LJMA 2N66A 2LT8A 1SN1A 1P00A 1VNBA 1JKZA 1AHOA 2LJ7A 1BCGA 1N4NA 1MYNA 2LR3A 1LQIA 2A7TA 1SNBA 1CHZA 3E7UX 4V1DC 1I6FA 2B3CA 2KBHA 2GL1A 1PTXA 1WWNA 1VNAA 1AYJA 1B3CA 2ATBA 1MR4A 1ICAA 1JXCA 2KBJA 2I61A 2E0HA 1DQ7A 1ZU3A 2KJAA 1T7BA 3E7RL 1FH3A 1T7EA 1ZVEA 1BMRA 1BK8A 1ZYWA 4KYPA 1CN2A 2SN3A 2KSKA 4CQKA 1BRZA 2NY8X 1LQQA 1P0AA 1ZYVA 1OMYA 2ASCA 4AAZA 2YC1C 2YBRC 1NRAA 2N69A 1C55A 1L4VA 1GPSA 4UJ0A 1C56A 1I6GA 1OZZA 1ZVGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PE4 A;  1SEG A;  3PSM A;  2KYQ A;  1LQH A;  1PX9 A;  2E3F A;  1DJT A;  1T0Z A;  2BRZ A;  1WT7 A;  1NPI A;  1TI5 A;  1I2V A;  2N2Q A;  5CY0 A;  2KPY A;  2LKB A;  5KK4 A;  1I2U A;  2YEO A;  2E3G A;  1NE5 A;  1ZUT A;  4AEI A;  2LY5 A;  1ZFU A;  1KV0 A;  1WMT A;  1GPT A;  2M8B B;  2NY9 X;  2LI7 A;  2LY6 A;  1JZB A;  1NRB A;  4HE7 A;  4HHF A;  2B68 A;  1SN4 A;  2N2R A;  1B7D A;  1NH5 A;  1T7A A;  2KBK A;  2MZ0 A;  4AB0 A;  1T1T A;  1JZA A;  2KGQ A;  2LJM A;  2N66 A;  2LT8 A;  1SN1 A;  1P00 A;  1VNB A;  1JKZ A;  1AHO A;  2LJ7 A;  1BCG A;  1N4N A;  1MYN A;  2LR3 A;  1LQI A;  2A7T A;  1SNB A;  1CHZ A;  3E7U X;  4V1D C;  1I6F A;  2B3C A;  2KBH A;  2GL1 A;  1PTX A;  1WWN A;  1VNA A;  1AYJ A;  1B3C A;  2ATB A;  1MR4 A;  1ICA A;  1JXC A;  2KBJ A;  2I61 A;  2E0H A;  1DQ7 A;  1ZU3 A;  2KJA A;  1T7B A;  3E7R L;  1FH3 A;  1T7E A;  1ZVE A;  1BMR A;  1BK8 A;  1ZYW A;  4KYP A;  1CN2 A;  2SN3 A;  2KSK A;  4CQK A;  1BRZ A;  2NY8 X;  1LQQ A;  1P0A A;  1ZYV A;  1OMY A;  2ASC A;  4AAZ A;  2YC1 C;  2YBR C;  1NRA A;  2N69 A;  1C55 A;  1L4V A;  1GPS A;  4UJ0 A;  1C56 A;  1I6G A;  1OZZ A;  1ZVG A; 
#chains in the Genus database with same CATH topology
 3KOY A;  2QWL A;  1PE4 A;  1SEG A;  3FZL A;  3L6Q A;  3PSM A;  1NGC A;  3QI7 A;  4KBO A;  2KYQ A;  5AQN A;  2KHO A;  1LQH A;  2QWQ A;  3ATV A;  1NGH A;  1PX9 A;  2E3F A;  2G2K A;  1DJT A;  3LDP A;  1HPM A;  4H5V A;  1T0Z A;  2E8A A;  2BRZ A;  5AQS A;  5AQZ A;  1WT7 A;  3GDQ A;  5F0X A;  1NPI A;  2YIO A;  1ATR A;  1QQN A;  5AQW A;  1S3X A;  4HWI A;  1NGG A;  1TI5 A;  1I2V A;  2N2Q A;  5EY4 A;  5CY0 A;  1NGI A;  5FPE A;  3GL1 A;  2KPY A;  2LKB A;  4FL9 A;  5AQI A;  5KK4 A;  1I2U A;  2YEO A;  3GKU A;  2E3G A;  3KOX A;  1K8B A;  3LDN A;  2QWM A;  1NE5 A;  1QQO A;  1ZUT A;  5AQJ A;  2LY5 A;  1ZFU A;  2V7Z A;  3L4I A;  5AQO A;  4AEI A;  1KV0 A;  1WMT A;  4H5R A;  1YUW A;  1NGD A;  3HSC A;  3JXU A;  3QML A;  5AQQ A;  1GPT A;  2M8B B;  2NY9 X;  4H5N A;  2LI7 A;  2E2F A;  2LY6 A;  5AQT A;  3SF4 D;  1JZB A;  1NRB A;  3LDO A;  4FSV A;  4HE7 A;  1DKG D;  2B68 A;  2YIP A;  3AY9 A;  3LDL A;  4HHF A;  5BPM A;  2E88 A;  1SN4 A;  2N2R A;  1B7D A;  1NH5 A;  1T7A A;  2KBK A;  2MZ0 A;  1XRS B;  4AB0 A;  1T1T A;  3I33 A;  3LDQ A;  4GNI A;  1JZA A;  2BUP A;  2KGQ A;  2LJM A;  2QWP A;  4H5T A;  4IO8 A;  2N66 A;  2LT8 A;  1SN1 A;  1P00 A;  1VNB A;  1JKZ A;  1AHO A;  2LJ7 A;  2K35 A;  5AQG A;  1BCG A;  1KAX A;  3FZM A;  1BUP A;  3IUC A;  1N4N A;  1MYN A;  2LR3 A;  1KAZ A;  1LQI A;  2A7T A;  3L56 A;  5AQV A;  3D2F A;  3KHW A;  1SNB A;  3CW4 A;  3CQX A;  2QWO A;  3M3Z A;  5AQX A;  1HX1 A;  3FZK A;  5F1X A;  1CHZ A;  1BA1 A;  5FPN A;  3E7U X;  4V1D C;  1I6F A;  1POI A;  4H5W A;  2B3C A;  2KBH A;  2GL1 A;  3QFU A;  1HJO A;  1PTX A;  1WWN A;  5F2R A;  5BN8 A;  1VNA A;  2QXL A;  3KP0 A;  5EX5 A;  1AYJ A;  5FPM A;  5AQY A;  3FE1 A;  1B3C A;  3BK3 C;  3D2F B;  2ATB A;  5AQH A;  1MR4 A;  1ICA A;  5FPD A;  3D2E A;  1JXC A;  2KBJ A;  2I61 A;  2E0H A;  5EVZ A;  1DQ7 A;  2QW9 A;  1ZU3 A;  2KJA A;  1NGF A;  1T7B A;  5AQF A;  5AQP A;  5EXW A;  2JDQ D;  3R2V A;  2D56 A;  4UAD E;  5AQL A;  1BA0 A;  3E7R L;  5BPN A;  1FH3 A;  1T7E A;  1UGL A;  1ZVE A;  2MN5 A;  2QWN A;  2YIL A;  3KOW A;  1BMR A;  2MBK A;  3KC6 A;  1ZYW A;  4UAF E;  5BN9 A;  1BK8 A;  1QQM A;  4KYP A;  5AQR A;  4UAE F;  3FZF A;  3D2E B;  1ATS A;  5AQM A;  1CN2 A;  5AR0 A;  1NGB A;  2SN3 A;  3C7N B;  1KAY A;  2KSK A;  5AQU A;  3KP1 A;  3FZH A;  4CQK A;  3ATU A;  3KVG A;  1BRZ A;  2NY8 X;  1LQQ A;  1NGA A;  1P0A A;  1ZYV A;  1OMY A;  2ASC A;  3QFP A;  2GMO A;  4AAZ A;  1NGJ A;  2YC1 C;  3A8Y A;  2YBR C;  5BPL A;  1NRA A;  5AQK A;  1NGE A;  2N69 A;  1C55 A;  1L4V A;  2LN8 A;  2QWR A;  1GPS A;  4UJ0 A;  1C56 A;  2VY6 A;  3C7N A;  1I6G A;  3KOZ A;  1OZZ A;  1ZVG A; 
#chains in the Genus database with same CATH homology
 1PE4 A;  1SEG A;  3PSM A;  2KYQ A;  1LQH A;  1PX9 A;  2E3F A;  1DJT A;  1T0Z A;  2BRZ A;  1WT7 A;  1NPI A;  1TI5 A;  1I2V A;  2N2Q A;  5CY0 A;  2KPY A;  2LKB A;  5KK4 A;  1I2U A;  2YEO A;  2E3G A;  1NE5 A;  1ZUT A;  4AEI A;  2LY5 A;  1ZFU A;  1KV0 A;  1WMT A;  1GPT A;  2M8B B;  2NY9 X;  2LI7 A;  2LY6 A;  1JZB A;  1NRB A;  4HE7 A;  4HHF A;  2B68 A;  1SN4 A;  2N2R A;  1B7D A;  1NH5 A;  1T7A A;  2KBK A;  2MZ0 A;  4AB0 A;  1T1T A;  1JZA A;  2KGQ A;  2LJM A;  2N66 A;  2LT8 A;  1SN1 A;  1P00 A;  1VNB A;  1JKZ A;  1AHO A;  2LJ7 A;  1BCG A;  1N4N A;  1MYN A;  2LR3 A;  1LQI A;  2A7T A;  1SNB A;  1CHZ A;  3E7U X;  4V1D C;  1I6F A;  2B3C A;  2KBH A;  2GL1 A;  1PTX A;  1WWN A;  1VNA A;  1AYJ A;  1B3C A;  2ATB A;  1MR4 A;  1ICA A;  1JXC A;  2KBJ A;  2I61 A;  2E0H A;  1DQ7 A;  1ZU3 A;  2KJA A;  1T7B A;  3E7R L;  1FH3 A;  1T7E A;  1ZVE A;  1BMR A;  1BK8 A;  1ZYW A;  4KYP A;  1CN2 A;  2SN3 A;  2KSK A;  4CQK A;  1BRZ A;  2NY8 X;  1LQQ A;  1P0A A;  1ZYV A;  1OMY A;  2ASC A;  4AAZ A;  2YC1 C;  2YBR C;  1NRA A;  2N69 A;  1C55 A;  1L4V A;  1GPS A;  4UJ0 A;  1C56 A;  1I6G A;  1OZZ A;  1ZVG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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