1VNBA

Proton nuclear magnetic resonance and distance geometry(slash)simulated annealing studies on the variant-1 neurotoxin from the new world scorpion centruroides sculpturatus ewing
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
65
structure length
65
Chain Sequence
KEGYLVKKSDGCKYDCFWLGKNEHCNTECKAKNQGGSYGYCYAFACWCEGLPESTPTYPLPNKSC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Neurotoxin
source organism Centruroides sculpturatus
publication title Proton nuclear magnetic resonance and distance geometry/simulated annealing studies on the variant-1 neurotoxin from the New World scorpion Centruroides sculpturatus Ewing.
pubmed doi rcsb
molecule keywords NEUROTOXIN
total genus 5
structure length 65
sequence length 65
ec nomenclature
pdb deposition date 1993-10-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00537 Toxin_3 Scorpion toxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1vnbA00
2KPYA 1KV0A 2YEOA 2NY8X 2E0HA 4CQKA 1BMRA 1DJTA 1PTXA 1L4VA 2KGQA 2I61A 2NY9X 1OMYA 2ASCA 1PX9A 1P00A 1WMTA 1JKZA 1ZU3A 1B3CA 1ZFUA 4HE7A 1WT7A 1T7BA 2KBKA 1BK8A 1DQ7A 1ZVGA 2N2RA 5KK4A 4AAZA 2GL1A 2LKBA 1CN2A 1I2VA 2KJAA 4AEIA 1ICAA 1JXCA 1LQHA 1CHZA 2YC1C 1TI5A 2LR3A 2LT8A 1WWNA 2E3GA 2KSKA 1B7DA 1SNBA 2ATBA 1NE5A 2B68A 1SEGA 1ZUTA 2MZ0A 1ZYWA 1OZZA 1I6FA 2KBJA 1SN1A 1VNAA 4UJ0A 1N4NA 1AHOA 2B3CA 1JZBA 2A7TA 2BRZA 4HHFA 4AB0A 2LI7A 1NH5A 1T1TA 1I6GA 2N2QA 1ZVEA 1JZAA 1GPSA 2M8BB 1C56A 2YBRC 1MR4A 2KBHA 1BCGA 5CY0A 1VNBA 2LY5A 1GPTA 1ZYVA 1MYNA 2N66A 1NRAA 1P0AA 2LJ7A 3E7RL 1T0ZA 1T7EA 1FH3A 1LQQA 1C55A 2KYQA 1I2UA 4V1DC 2LJMA 1NPIA 1T7AA 2LY6A 1PE4A 2N69A 3PSMA 2SN3A 1NRBA 1BRZA 3E7UX 1LQIA 1SN4A 1AYJA 2E3FA 4KYPA
chains in the Genus database with same CATH superfamily
1NGHA 1HJOA 1NGCA 1KV0A 2KPYA 5AQTA 2G2KA 1BA0A 2YEOA 2NY8X 3M3ZA 5AQYA 3FZFA 3GKUA 2E0HA 4CQKA 3IUCA 2E8AA 2QWOA 4UADE 5AQIA 1BMRA 1DJTA 1ATSA 1PTXA 2KGQA 1L4VA 2I61A 2NY9X 2QWNA 5AQOA 2QW9A 1QQOA 3JXUA 5FPEA 1OMYA 3CQXA 2GMOA 1NGGA 5AQPA 4UAFE 2ASCA 3FE1A 1PX9A 1HX1A 1BUPA 1P00A 1WMTA 4H5NA 1ZU3A 2MBKA 5FPNA 2QWRA 1ZFUA 2KHOA 1B3CA 3KOWA 5BN9A 4HE7A 1WT7A 1T7BA 3L6QA 2KBKA 4IO8A 3FZKA 3A8YA 1BK8A 3KVGA 1DQ7A 1ZVGA 2N2RA 4HWIA 5KK4A 4AAZA 2GL1A 2LKBA 2QWMA 2YIPA 1CN2A 3BK3C 3ATUA 2QWQA 2YIOA 1XRSB 3CW4A 1I2VA 2KJAA 5AQSA 4AEIA 1ICAA 3D2EA 3ATVA 3LDQA 5AQLA 5EVZA 5AQKA 1JXCA 1LQHA 1CHZA 3QFPA 5BN8A 2YC1C 1NGAA 1BA1A 5AQVA 1K8BA 1YUWA 1TI5A 2LR3A 2LT8A 4FL9A 1KAZA 2BUPA 3L4IA 3LDNA 1WWNA 2E3GA 2E2FA 1B7DA 2KSKA 5AQGA 5EX5A 4FSVA 1SNBA 2V7ZA 2ATBA 3KOZA 3GDQA 3QI7A 5EXWA 2D56A 3GL1A 4KBOA 5AR0A 5AQWA 4H5WA 1QQNA 2LN8A 1NE5A 2B68A 5EY4A 1KAXA 1SEGA 5F1XA 2QWPA 1ZUTA 1NGEA 2MZ0A 5BPMA 1NGFA 1ZYWA 3KP1A 5AQRA 1OZZA 5AQXA 1I6FA 5AQMA 3KC6A 2KBJA 1SN1A 5F0XA 1VNAA 3HSCA 3KHWA 4UJ0A 2QWLA 1N4NA 1POIA 3KP0A 1AHOA 2B3CA 1JZBA 2A7TA 2BRZA 3C7NA 3D2FA 5AQNA 4HHFA 4AB0A 1AYJA 5AQUA 1HPMA 5FPMA 1JKZA 1S3XA 2JDQD 1NH5A 2LI7A 1T1TA 3D2EB 3I33A 1I6GA 2N2QA 1ZVEA 3LDOA 1JZAA 5F2RA 2M8BB 1C56A 3D2FB 5AQJA 1GPSA 2YBRC 1MR4A 1NGDA 1BCGA 2KBHA 2QXLA 5CY0A 1KAYA 3SF4D 5BPNA 3KOYA 1VNBA 1NGJA 2LY5A 3FZHA 1GPTA 3KOXA 1NGIA 1ZYVA 1MYNA 2N66A 5FPDA 1NRAA 1P0AA 4H5RA 3FZMA 2LJ7A 2VY6A 2YILA 3E7RL 3QFUA 1NGBA 1T0ZA 1T7EA 3R2VA 5AQZA 1FH3A 1LQQA 3L56A 1C55A 5AQFA 2KYQA 3FZLA 4UAEF 5AQQA 4V1DC 1I2UA 3AY9A 5AQHA 2LJMA 3QMLA 1NPIA 1T7AA 2LY6A 1PE4A 2N69A 4H5TA 4GNIA 2E88A 1UGLA 3PSMA 2SN3A 3LDLA 1NRBA 4H5VA 2K35A 1BRZA 2MN5A 3C7NB 3E7UX 1LQIA 1QQMA 1SN4A 1ATRA 2E3FA 3LDPA 5BPLA 1DKGD 4KYPA
chains in the Genus database with same CATH topology
2KPYA 1KV0A 2YEOA 2NY8X 2E0HA 4CQKA 1BMRA 1DJTA 1PTXA 1L4VA 2KGQA 2I61A 2NY9X 1OMYA 2ASCA 1PX9A 1P00A 1WMTA 1JKZA 1ZU3A 1B3CA 1ZFUA 4HE7A 1WT7A 1T7BA 2KBKA 1BK8A 1DQ7A 1ZVGA 2N2RA 5KK4A 4AAZA 2GL1A 2LKBA 1CN2A 1I2VA 2KJAA 4AEIA 1ICAA 1JXCA 1LQHA 1CHZA 2YC1C 1TI5A 2LR3A 2LT8A 1WWNA 2E3GA 2KSKA 1B7DA 1SNBA 2ATBA 1NE5A 2B68A 1SEGA 1ZUTA 2MZ0A 1ZYWA 1OZZA 1I6FA 2KBJA 1SN1A 1VNAA 4UJ0A 1N4NA 1AHOA 2B3CA 1JZBA 2A7TA 2BRZA 4HHFA 4AB0A 2LI7A 1NH5A 1T1TA 1I6GA 2N2QA 1ZVEA 1JZAA 1GPSA 2M8BB 1C56A 2YBRC 1MR4A 2KBHA 1BCGA 5CY0A 1VNBA 2LY5A 1GPTA 1ZYVA 1MYNA 2N66A 1NRAA 1P0AA 2LJ7A 3E7RL 1T0ZA 1T7EA 1FH3A 1LQQA 1C55A 2KYQA 1I2UA 4V1DC 2LJMA 1NPIA 1T7AA 2LY6A 1PE4A 2N69A 3PSMA 2SN3A 1NRBA 1BRZA 3E7UX 1LQIA 1SN4A 1AYJA 2E3FA 4KYPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KPY A;  1KV0 A;  2YEO A;  2NY8 X;  2E0H A;  4CQK A;  1BMR A;  1DJT A;  1PTX A;  1L4V A;  2KGQ A;  2I61 A;  2NY9 X;  1OMY A;  2ASC A;  1PX9 A;  1P00 A;  1WMT A;  1JKZ A;  1ZU3 A;  1B3C A;  1ZFU A;  4HE7 A;  1WT7 A;  1T7B A;  2KBK A;  1BK8 A;  1DQ7 A;  1ZVG A;  2N2R A;  5KK4 A;  4AAZ A;  2GL1 A;  2LKB A;  1CN2 A;  1I2V A;  2KJA A;  4AEI A;  1ICA A;  1JXC A;  1LQH A;  1CHZ A;  2YC1 C;  1TI5 A;  2LR3 A;  2LT8 A;  1WWN A;  2E3G A;  2KSK A;  1B7D A;  1SNB A;  2ATB A;  1NE5 A;  2B68 A;  1SEG A;  1ZUT A;  2MZ0 A;  1ZYW A;  1OZZ A;  1I6F A;  2KBJ A;  1SN1 A;  1VNA A;  4UJ0 A;  1N4N A;  1AHO A;  2B3C A;  1JZB A;  2A7T A;  2BRZ A;  4HHF A;  4AB0 A;  2LI7 A;  1NH5 A;  1T1T A;  1I6G A;  2N2Q A;  1ZVE A;  1JZA A;  1GPS A;  2M8B B;  1C56 A;  2YBR C;  1MR4 A;  2KBH A;  1BCG A;  5CY0 A;  1VNB A;  2LY5 A;  1GPT A;  1ZYV A;  1MYN A;  2N66 A;  1NRA A;  1P0A A;  2LJ7 A;  3E7R L;  1T0Z A;  1T7E A;  1FH3 A;  1LQQ A;  1C55 A;  2KYQ A;  1I2U A;  4V1D C;  2LJM A;  1NPI A;  1T7A A;  2LY6 A;  1PE4 A;  2N69 A;  3PSM A;  2SN3 A;  1NRB A;  1BRZ A;  3E7U X;  1LQI A;  1SN4 A;  1AYJ A;  2E3F A;  4KYP A; 
#chains in the Genus database with same CATH topology
 1NGH A;  1HJO A;  1NGC A;  1KV0 A;  2KPY A;  5AQT A;  2G2K A;  1BA0 A;  2YEO A;  2NY8 X;  3M3Z A;  5AQY A;  3FZF A;  3GKU A;  2E0H A;  4CQK A;  3IUC A;  2E8A A;  2QWO A;  4UAD E;  5AQI A;  1BMR A;  1DJT A;  1ATS A;  1PTX A;  2KGQ A;  1L4V A;  2I61 A;  2NY9 X;  2QWN A;  5AQO A;  2QW9 A;  1QQO A;  3JXU A;  5FPE A;  1OMY A;  3CQX A;  2GMO A;  1NGG A;  5AQP A;  4UAF E;  2ASC A;  3FE1 A;  1PX9 A;  1HX1 A;  1BUP A;  1P00 A;  1WMT A;  4H5N A;  1ZU3 A;  2MBK A;  5FPN A;  2QWR A;  1ZFU A;  2KHO A;  1B3C A;  3KOW A;  5BN9 A;  4HE7 A;  1WT7 A;  1T7B A;  3L6Q A;  2KBK A;  4IO8 A;  3FZK A;  3A8Y A;  1BK8 A;  3KVG A;  1DQ7 A;  1ZVG A;  2N2R A;  4HWI A;  5KK4 A;  4AAZ A;  2GL1 A;  2LKB A;  2QWM A;  2YIP A;  1CN2 A;  3BK3 C;  3ATU A;  2QWQ A;  2YIO A;  1XRS B;  3CW4 A;  1I2V A;  2KJA A;  5AQS A;  4AEI A;  1ICA A;  3D2E A;  3ATV A;  3LDQ A;  5AQL A;  5EVZ A;  5AQK A;  1JXC A;  1LQH A;  1CHZ A;  3QFP A;  5BN8 A;  2YC1 C;  1NGA A;  1BA1 A;  5AQV A;  1K8B A;  1YUW A;  1TI5 A;  2LR3 A;  2LT8 A;  4FL9 A;  1KAZ A;  2BUP A;  3L4I A;  3LDN A;  1WWN A;  2E3G A;  2E2F A;  1B7D A;  2KSK A;  5AQG A;  5EX5 A;  4FSV A;  1SNB A;  2V7Z A;  2ATB A;  3KOZ A;  3GDQ A;  3QI7 A;  5EXW A;  2D56 A;  3GL1 A;  4KBO A;  5AR0 A;  5AQW A;  4H5W A;  1QQN A;  2LN8 A;  1NE5 A;  2B68 A;  5EY4 A;  1KAX A;  1SEG A;  5F1X A;  2QWP A;  1ZUT A;  1NGE A;  2MZ0 A;  5BPM A;  1NGF A;  1ZYW A;  3KP1 A;  5AQR A;  1OZZ A;  5AQX A;  1I6F A;  5AQM A;  3KC6 A;  2KBJ A;  1SN1 A;  5F0X A;  1VNA A;  3HSC A;  3KHW A;  4UJ0 A;  2QWL A;  1N4N A;  1POI A;  3KP0 A;  1AHO A;  2B3C A;  1JZB A;  2A7T A;  2BRZ A;  3C7N A;  3D2F A;  5AQN A;  4HHF A;  4AB0 A;  1AYJ A;  5AQU A;  1HPM A;  5FPM A;  1JKZ A;  1S3X A;  2JDQ D;  1NH5 A;  2LI7 A;  1T1T A;  3D2E B;  3I33 A;  1I6G A;  2N2Q A;  1ZVE A;  3LDO A;  1JZA A;  5F2R A;  2M8B B;  1C56 A;  3D2F B;  5AQJ A;  1GPS A;  2YBR C;  1MR4 A;  1NGD A;  1BCG A;  2KBH A;  2QXL A;  5CY0 A;  1KAY A;  3SF4 D;  5BPN A;  3KOY A;  1VNB A;  1NGJ A;  2LY5 A;  3FZH A;  1GPT A;  3KOX A;  1NGI A;  1ZYV A;  1MYN A;  2N66 A;  5FPD A;  1NRA A;  1P0A A;  4H5R A;  3FZM A;  2LJ7 A;  2VY6 A;  2YIL A;  3E7R L;  3QFU A;  1NGB A;  1T0Z A;  1T7E A;  3R2V A;  5AQZ A;  1FH3 A;  1LQQ A;  3L56 A;  1C55 A;  5AQF A;  2KYQ A;  3FZL A;  4UAE F;  5AQQ A;  4V1D C;  1I2U A;  3AY9 A;  5AQH A;  2LJM A;  3QML A;  1NPI A;  1T7A A;  2LY6 A;  1PE4 A;  2N69 A;  4H5T A;  4GNI A;  2E88 A;  1UGL A;  3PSM A;  2SN3 A;  3LDL A;  1NRB A;  4H5V A;  2K35 A;  1BRZ A;  2MN5 A;  3C7N B;  3E7U X;  1LQI A;  1QQM A;  1SN4 A;  1ATR A;  2E3F A;  3LDP A;  5BPL A;  1DKG D;  4KYP A; 
#chains in the Genus database with same CATH homology
 2KPY A;  1KV0 A;  2YEO A;  2NY8 X;  2E0H A;  4CQK A;  1BMR A;  1DJT A;  1PTX A;  1L4V A;  2KGQ A;  2I61 A;  2NY9 X;  1OMY A;  2ASC A;  1PX9 A;  1P00 A;  1WMT A;  1JKZ A;  1ZU3 A;  1B3C A;  1ZFU A;  4HE7 A;  1WT7 A;  1T7B A;  2KBK A;  1BK8 A;  1DQ7 A;  1ZVG A;  2N2R A;  5KK4 A;  4AAZ A;  2GL1 A;  2LKB A;  1CN2 A;  1I2V A;  2KJA A;  4AEI A;  1ICA A;  1JXC A;  1LQH A;  1CHZ A;  2YC1 C;  1TI5 A;  2LR3 A;  2LT8 A;  1WWN A;  2E3G A;  2KSK A;  1B7D A;  1SNB A;  2ATB A;  1NE5 A;  2B68 A;  1SEG A;  1ZUT A;  2MZ0 A;  1ZYW A;  1OZZ A;  1I6F A;  2KBJ A;  1SN1 A;  1VNA A;  4UJ0 A;  1N4N A;  1AHO A;  2B3C A;  1JZB A;  2A7T A;  2BRZ A;  4HHF A;  4AB0 A;  2LI7 A;  1NH5 A;  1T1T A;  1I6G A;  2N2Q A;  1ZVE A;  1JZA A;  1GPS A;  2M8B B;  1C56 A;  2YBR C;  1MR4 A;  2KBH A;  1BCG A;  5CY0 A;  1VNB A;  2LY5 A;  1GPT A;  1ZYV A;  1MYN A;  2N66 A;  1NRA A;  1P0A A;  2LJ7 A;  3E7R L;  1T0Z A;  1T7E A;  1FH3 A;  1LQQ A;  1C55 A;  2KYQ A;  1I2U A;  4V1D C;  2LJM A;  1NPI A;  1T7A A;  2LY6 A;  1PE4 A;  2N69 A;  3PSM A;  2SN3 A;  1NRB A;  1BRZ A;  3E7U X;  1LQI A;  1SN4 A;  1AYJ A;  2E3F A;  4KYP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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