1P0AA

Nmr structure of etd135, mutant of the antifungal defensin ard1 from archaeoprepona demophon
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
44
structure length
44
Chain Sequence
DKLIGSCVWGAVNYTSNCNAECKRRGYKGGHCGSFLNVNCWCET
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antifungal protein
source organism Archaeoprepona demophon
publication title Lead optimization of antifungal peptides with 3D NMR structures analysis.
pubmed doi rcsb
molecule keywords DEFENSIN ARD1
total genus 8
structure length 44
sequence length 44
ec nomenclature
pdb deposition date 2003-04-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1p0aA00
1BMRA 1ZYWA 1TI5A 1NRAA 1SN1A 2KBHA 1JXCA 2E3FA 2NY8X 2M8BB 2KBKA 1I2VA 1FH3A 2KJAA 1OZZA 1I6FA 2YBRC 1CN2A 1BRZA 4KYPA 1ZU3A 1I2UA 3PSMA 1WWNA 2LJ7A 2A7TA 2LY6A 1AYJA 2KPYA 4AEIA 4V1DC 1JKZA 1NPIA 1P00A 1T7BA 1P0AA 2LT8A 2KSKA 1SN4A 1LQIA 1LQQA 1ZVEA 1T7AA 2KYQA 2N69A 2N2QA 1OMYA 1C56A 2KBJA 1L4VA 2BRZA 1ICAA 2E3GA 2YEOA 1B7DA 1JZBA 1T1TA 1GPTA 1ZVGA 1DJTA 1ZUTA 1WT7A 2LR3A 2N66A 1MYNA 1I6GA 1BCGA 1ZFUA 4CQKA 5KK4A 2NY9X 2LI7A 1PX9A 2LY5A 1C55A 2ATBA 2MZ0A 2YC1C 4AB0A 4HHFA 2B68A 1WMTA 1N4NA 1SNBA 1CHZA 2GL1A 2KGQA 2SN3A 1NH5A 1B3CA 1PE4A 1NRBA 1GPSA 1T7EA 1NE5A 1T0ZA 1LQHA 1VNBA 1BK8A 2E0HA 2LKBA 2B3CA 1KV0A 5CY0A 1JZAA 1SEGA 4HE7A 2N2RA 2I61A 4UJ0A 2ASCA 1DQ7A 3E7UX 1VNAA 1ZYVA 2LJMA 1PTXA 1AHOA 3E7RL 4AAZA 1MR4A
chains in the Genus database with same CATH superfamily
1BMRA 1ZYWA 2YIOA 1TI5A 1NRAA 1SN1A 2KBHA 1JXCA 2E3FA 2QWNA 2V7ZA 5AQXA 5FPDA 2NY8X 3KOZA 2MN5A 3D2FA 3L56A 4UAEF 3HSCA 2M8BB 2KBKA 1NGEA 3FZFA 1I2VA 1FH3A 2KJAA 1NGBA 5BN9A 3KP0A 3LDOA 4UADE 1OZZA 1I6FA 3KOXA 2YBRC 3LDNA 5BPLA 1BA1A 5AQNA 1CN2A 5AQSA 1BRZA 4KYPA 2E8AA 4H5NA 1ZU3A 1I2UA 3KC6A 1QQMA 3D2EA 3LDPA 5AQTA 3QFPA 3PSMA 2QW9A 1KAYA 2E88A 1DKGD 1WWNA 2LJ7A 1UGLA 2A7TA 2QXLA 3A8YA 3FZLA 1NGFA 2LY6A 2VY6A 3D2FB 3FZHA 3KP1A 4KBOA 1KAZA 1BUPA 2KPYA 1HJOA 5AQLA 1AYJA 2QWPA 3ATVA 3KHWA 5AQHA 4AEIA 3LDLA 3ATUA 4V1DC 1S3XA 5F1XA 1KAXA 1JKZA 5AQYA 1NPIA 3GKUA 3R2VA 1P00A 1QQNA 1P0AA 1T7BA 2LT8A 5EY4A 4GNIA 2KSKA 5AQMA 3D2EB 1NGAA 1SN4A 5AQPA 1LQIA 1LQQA 1ATRA 1ZVEA 2E2FA 1T7AA 2KYQA 2N69A 2QWLA 2N2QA 1HX1A 5AQRA 1K8BA 1OMYA 4IO8A 1C56A 2KBJA 1L4VA 5AQKA 5BPNA 2BRZA 1ICAA 3IUCA 2E3GA 2YEOA 1NGCA 1B7DA 1JZBA 5AQJA 3I33A 1HPMA 1T1TA 1ATSA 2BUPA 4H5RA 5FPNA 1GPTA 5BPMA 1ZVGA 1NGGA 1DJTA 1ZUTA 1WT7A 2LR3A 3QI7A 2QWRA 3M3ZA 2N66A 1NGJA 1MYNA 2JDQD 4H5VA 1I6GA 3C7NA 3QFUA 1BCGA 5FPEA 1ZFUA 4CQKA 5KK4A 1YUWA 2NY9X 3AY9A 2GMOA 3KOWA 1NGIA 1PX9A 2LI7A 1POIA 2LY5A 1C55A 1BA0A 2ATBA 5EX5A 2MZ0A 2YC1C 1QQOA 3LDQA 5F2RA 2LN8A 5FPMA 4AB0A 5AQIA 4HHFA 3CQXA 2B68A 1NGHA 1WMTA 1N4NA 1SNBA 1CHZA 2GL1A 5EVZA 2KGQA 2K35A 2MBKA 1NH5A 2SN3A 3KOYA 4HWIA 1B3CA 3C7NB 1PE4A 3KVGA 5AQWA 2KHOA 2D56A 2YILA 1NRBA 3FZKA 1T7EA 1NE5A 5AQQA 1GPSA 1T0ZA 5AQGA 4FL9A 3FZMA 1LQHA 1VNBA 2QWQA 3BK3C 1BK8A 2E0HA 4FSVA 2LKBA 3L4IA 4H5TA 2B3CA 5BN8A 3QMLA 5AR0A 1KV0A 2YIPA 5F0XA 5CY0A 1JZAA 1SEGA 4HE7A 2QWMA 5AQFA 4UAFE 2N2RA 2QWOA 5EXWA 2I61A 3GDQA 4UJ0A 2ASCA 3L6QA 1DQ7A 3E7UX 3SF4D 1NGDA 4H5WA 1VNAA 3GL1A 5AQOA 5AQUA 3CW4A 1XRSB 1ZYVA 1PTXA 2LJMA 3FE1A 1AHOA 2G2KA 3JXUA 5AQVA 3E7RL 5AQZA 4AAZA 1MR4A
chains in the Genus database with same CATH topology
1BMRA 1ZYWA 1TI5A 1NRAA 1SN1A 2KBHA 1JXCA 2E3FA 2NY8X 2M8BB 2KBKA 1I2VA 1FH3A 2KJAA 1OZZA 1I6FA 2YBRC 1CN2A 1BRZA 4KYPA 1ZU3A 1I2UA 3PSMA 1WWNA 2LJ7A 2A7TA 2LY6A 1AYJA 2KPYA 4AEIA 4V1DC 1JKZA 1NPIA 1P00A 1T7BA 1P0AA 2LT8A 2KSKA 1SN4A 1LQIA 1LQQA 1ZVEA 1T7AA 2KYQA 2N69A 2N2QA 1OMYA 1C56A 2KBJA 1L4VA 2BRZA 1ICAA 2E3GA 2YEOA 1B7DA 1JZBA 1T1TA 1GPTA 1ZVGA 1DJTA 1ZUTA 1WT7A 2LR3A 2N66A 1MYNA 1I6GA 1BCGA 1ZFUA 4CQKA 5KK4A 2NY9X 2LI7A 1PX9A 2LY5A 1C55A 2ATBA 2MZ0A 2YC1C 4AB0A 4HHFA 2B68A 1WMTA 1N4NA 1SNBA 1CHZA 2GL1A 2KGQA 2SN3A 1NH5A 1B3CA 1PE4A 1NRBA 1GPSA 1T7EA 1NE5A 1T0ZA 1LQHA 1VNBA 1BK8A 2E0HA 2LKBA 2B3CA 1KV0A 5CY0A 1JZAA 1SEGA 4HE7A 2N2RA 2I61A 4UJ0A 2ASCA 1DQ7A 3E7UX 1VNAA 1ZYVA 2LJMA 1PTXA 1AHOA 3E7RL 4AAZA 1MR4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BMR A;  1ZYW A;  1TI5 A;  1NRA A;  1SN1 A;  2KBH A;  1JXC A;  2E3F A;  2NY8 X;  2M8B B;  2KBK A;  1I2V A;  1FH3 A;  2KJA A;  1OZZ A;  1I6F A;  2YBR C;  1CN2 A;  1BRZ A;  4KYP A;  1ZU3 A;  1I2U A;  3PSM A;  1WWN A;  2LJ7 A;  2A7T A;  2LY6 A;  1AYJ A;  2KPY A;  4AEI A;  4V1D C;  1JKZ A;  1NPI A;  1P00 A;  1T7B A;  1P0A A;  2LT8 A;  2KSK A;  1SN4 A;  1LQI A;  1LQQ A;  1ZVE A;  1T7A A;  2KYQ A;  2N69 A;  2N2Q A;  1OMY A;  1C56 A;  2KBJ A;  1L4V A;  2BRZ A;  1ICA A;  2E3G A;  2YEO A;  1B7D A;  1JZB A;  1T1T A;  1GPT A;  1ZVG A;  1DJT A;  1ZUT A;  1WT7 A;  2LR3 A;  2N66 A;  1MYN A;  1I6G A;  1BCG A;  1ZFU A;  4CQK A;  5KK4 A;  2NY9 X;  2LI7 A;  1PX9 A;  2LY5 A;  1C55 A;  2ATB A;  2MZ0 A;  2YC1 C;  4AB0 A;  4HHF A;  2B68 A;  1WMT A;  1N4N A;  1SNB A;  1CHZ A;  2GL1 A;  2KGQ A;  2SN3 A;  1NH5 A;  1B3C A;  1PE4 A;  1NRB A;  1GPS A;  1T7E A;  1NE5 A;  1T0Z A;  1LQH A;  1VNB A;  1BK8 A;  2E0H A;  2LKB A;  2B3C A;  1KV0 A;  5CY0 A;  1JZA A;  1SEG A;  4HE7 A;  2N2R A;  2I61 A;  4UJ0 A;  2ASC A;  1DQ7 A;  3E7U X;  1VNA A;  1ZYV A;  2LJM A;  1PTX A;  1AHO A;  3E7R L;  4AAZ A;  1MR4 A; 
#chains in the Genus database with same CATH topology
 1BMR A;  1ZYW A;  2YIO A;  1TI5 A;  1NRA A;  1SN1 A;  2KBH A;  1JXC A;  2E3F A;  2QWN A;  2V7Z A;  5AQX A;  5FPD A;  2NY8 X;  3KOZ A;  2MN5 A;  3D2F A;  3L56 A;  4UAE F;  3HSC A;  2M8B B;  2KBK A;  1NGE A;  3FZF A;  1I2V A;  1FH3 A;  2KJA A;  1NGB A;  5BN9 A;  3KP0 A;  3LDO A;  4UAD E;  1OZZ A;  1I6F A;  3KOX A;  2YBR C;  3LDN A;  5BPL A;  1BA1 A;  5AQN A;  1CN2 A;  5AQS A;  1BRZ A;  4KYP A;  2E8A A;  4H5N A;  1ZU3 A;  1I2U A;  3KC6 A;  1QQM A;  3D2E A;  3LDP A;  5AQT A;  3QFP A;  3PSM A;  2QW9 A;  1KAY A;  2E88 A;  1DKG D;  1WWN A;  2LJ7 A;  1UGL A;  2A7T A;  2QXL A;  3A8Y A;  3FZL A;  1NGF A;  2LY6 A;  2VY6 A;  3D2F B;  3FZH A;  3KP1 A;  4KBO A;  1KAZ A;  1BUP A;  2KPY A;  1HJO A;  5AQL A;  1AYJ A;  2QWP A;  3ATV A;  3KHW A;  5AQH A;  4AEI A;  3LDL A;  3ATU A;  4V1D C;  1S3X A;  5F1X A;  1KAX A;  1JKZ A;  5AQY A;  1NPI A;  3GKU A;  3R2V A;  1P00 A;  1QQN A;  1P0A A;  1T7B A;  2LT8 A;  5EY4 A;  4GNI A;  2KSK A;  5AQM A;  3D2E B;  1NGA A;  1SN4 A;  5AQP A;  1LQI A;  1LQQ A;  1ATR A;  1ZVE A;  2E2F A;  1T7A A;  2KYQ A;  2N69 A;  2QWL A;  2N2Q A;  1HX1 A;  5AQR A;  1K8B A;  1OMY A;  4IO8 A;  1C56 A;  2KBJ A;  1L4V A;  5AQK A;  5BPN A;  2BRZ A;  1ICA A;  3IUC A;  2E3G A;  2YEO A;  1NGC A;  1B7D A;  1JZB A;  5AQJ A;  3I33 A;  1HPM A;  1T1T A;  1ATS A;  2BUP A;  4H5R A;  5FPN A;  1GPT A;  5BPM A;  1ZVG A;  1NGG A;  1DJT A;  1ZUT A;  1WT7 A;  2LR3 A;  3QI7 A;  2QWR A;  3M3Z A;  2N66 A;  1NGJ A;  1MYN A;  2JDQ D;  4H5V A;  1I6G A;  3C7N A;  3QFU A;  1BCG A;  5FPE A;  1ZFU A;  4CQK A;  5KK4 A;  1YUW A;  2NY9 X;  3AY9 A;  2GMO A;  3KOW A;  1NGI A;  1PX9 A;  2LI7 A;  1POI A;  2LY5 A;  1C55 A;  1BA0 A;  2ATB A;  5EX5 A;  2MZ0 A;  2YC1 C;  1QQO A;  3LDQ A;  5F2R A;  2LN8 A;  5FPM A;  4AB0 A;  5AQI A;  4HHF A;  3CQX A;  2B68 A;  1NGH A;  1WMT A;  1N4N A;  1SNB A;  1CHZ A;  2GL1 A;  5EVZ A;  2KGQ A;  2K35 A;  2MBK A;  1NH5 A;  2SN3 A;  3KOY A;  4HWI A;  1B3C A;  3C7N B;  1PE4 A;  3KVG A;  5AQW A;  2KHO A;  2D56 A;  2YIL A;  1NRB A;  3FZK A;  1T7E A;  1NE5 A;  5AQQ A;  1GPS A;  1T0Z A;  5AQG A;  4FL9 A;  3FZM A;  1LQH A;  1VNB A;  2QWQ A;  3BK3 C;  1BK8 A;  2E0H A;  4FSV A;  2LKB A;  3L4I A;  4H5T A;  2B3C A;  5BN8 A;  3QML A;  5AR0 A;  1KV0 A;  2YIP A;  5F0X A;  5CY0 A;  1JZA A;  1SEG A;  4HE7 A;  2QWM A;  5AQF A;  4UAF E;  2N2R A;  2QWO A;  5EXW A;  2I61 A;  3GDQ A;  4UJ0 A;  2ASC A;  3L6Q A;  1DQ7 A;  3E7U X;  3SF4 D;  1NGD A;  4H5W A;  1VNA A;  3GL1 A;  5AQO A;  5AQU A;  3CW4 A;  1XRS B;  1ZYV A;  1PTX A;  2LJM A;  3FE1 A;  1AHO A;  2G2K A;  3JXU A;  5AQV A;  3E7R L;  5AQZ A;  4AAZ A;  1MR4 A; 
#chains in the Genus database with same CATH homology
 1BMR A;  1ZYW A;  1TI5 A;  1NRA A;  1SN1 A;  2KBH A;  1JXC A;  2E3F A;  2NY8 X;  2M8B B;  2KBK A;  1I2V A;  1FH3 A;  2KJA A;  1OZZ A;  1I6F A;  2YBR C;  1CN2 A;  1BRZ A;  4KYP A;  1ZU3 A;  1I2U A;  3PSM A;  1WWN A;  2LJ7 A;  2A7T A;  2LY6 A;  1AYJ A;  2KPY A;  4AEI A;  4V1D C;  1JKZ A;  1NPI A;  1P00 A;  1T7B A;  1P0A A;  2LT8 A;  2KSK A;  1SN4 A;  1LQI A;  1LQQ A;  1ZVE A;  1T7A A;  2KYQ A;  2N69 A;  2N2Q A;  1OMY A;  1C56 A;  2KBJ A;  1L4V A;  2BRZ A;  1ICA A;  2E3G A;  2YEO A;  1B7D A;  1JZB A;  1T1T A;  1GPT A;  1ZVG A;  1DJT A;  1ZUT A;  1WT7 A;  2LR3 A;  2N66 A;  1MYN A;  1I6G A;  1BCG A;  1ZFU A;  4CQK A;  5KK4 A;  2NY9 X;  2LI7 A;  1PX9 A;  2LY5 A;  1C55 A;  2ATB A;  2MZ0 A;  2YC1 C;  4AB0 A;  4HHF A;  2B68 A;  1WMT A;  1N4N A;  1SNB A;  1CHZ A;  2GL1 A;  2KGQ A;  2SN3 A;  1NH5 A;  1B3C A;  1PE4 A;  1NRB A;  1GPS A;  1T7E A;  1NE5 A;  1T0Z A;  1LQH A;  1VNB A;  1BK8 A;  2E0H A;  2LKB A;  2B3C A;  1KV0 A;  5CY0 A;  1JZA A;  1SEG A;  4HE7 A;  2N2R A;  2I61 A;  4UJ0 A;  2ASC A;  1DQ7 A;  3E7U X;  1VNA A;  1ZYV A;  2LJM A;  1PTX A;  1AHO A;  3E7R L;  4AAZ A;  1MR4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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