3E7UX

X-ray crystal structure of l-plectasin
Total Genus 10
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
40
structure length
40
Chain Sequence
GFGCNGPWDEDDMQCHNHCKSIKGYKGGYCAKGGFVCKCY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Antimicrobial protein
publication title Racemic crystallography of synthetic protein enantiomers used to determine the X-ray structure of plectasin by direct methods
pubmed doi rcsb
molecule keywords Plectasin
total genus 10
structure length 40
sequence length 40
ec nomenclature
pdb deposition date 2008-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF01097 Defensin_2 Arthropod defensin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 3e7uX01
1LQHA 1SEGA 1ICAA 2B3CA 2N69A 2B68A 1SN4A 2LT8A 1T7EA 1AYJA 1DJTA 1C56A 1ZUTA 2KJAA 2LJMA 1MYNA 4AEIA 2LKBA 2KGQA 1BRZA 4V1DC 2NY8X 2MZ0A 1NH5A 2LI7A 5KK4A 4CQKA 4KYPA 1DQ7A 1I2VA 1C55A 1BK8A 2NY9X 2M8BB 1ZYWA 1I6GA 1ZVEA 1ZVGA 1MR4A 1I2UA 1OMYA 1SN1A 1LQQA 2BRZA 1I6FA 2LY6A 1ZYVA 1P00A 1VNAA 2YC1C 1NRAA 1JKZA 1T7AA 1L4VA 2KBJA 4UJ0A 1NRBA 2KYQA 4HHFA 1BMRA 2E3GA 2KBHA 1ZU3A 4AAZA 1JZAA 2GL1A 2N66A 2KPYA 2KBKA 1WMTA 5CY0A 1WT7A 4HE7A 1T7BA 2SN3A 1PE4A 2N2QA 2A7TA 1BCGA 3PSMA 1PX9A 1T1TA 1CN2A 1SNBA 3E7UX 1P0AA 1OZZA 1WWNA 1FH3A 2ATBA 2LY5A 1GPTA 1ZFUA 2E3FA 2KSKA 1T0ZA 1GPSA 1JXCA 2I61A 1JZBA 2YBRC 2YEOA 2LJ7A 1VNBA 2ASCA 1LQIA 1CHZA 1KV0A 1PTXA 1B3CA 4AB0A 2E0HA 1B7DA 1NE5A 2N2RA 1NPIA 2LR3A 1TI5A 1N4NA 3E7RL 1AHOA
chains in the Genus database with same CATH superfamily
1DKGD 3KVGA 1LQHA 1NGBA 5AQUA 3QFUA 1SEGA 1ICAA 2B3CA 5F2RA 1HPMA 1NGHA 2N69A 3GL1A 2B68A 1SN4A 5BN9A 2LT8A 1T7EA 3KOXA 1AYJA 1DJTA 2YIPA 1C56A 3QMLA 1ZUTA 2KJAA 2LJMA 2QWPA 1MYNA 4AEIA 1NGDA 2LKBA 2E8AA 1XRSB 2D56A 2KHOA 2KGQA 3C7NB 1BRZA 4V1DC 2NY8X 2YILA 4IO8A 1ATRA 5FPMA 5AQIA 2MZ0A 1NH5A 1YUWA 5AQMA 5AQLA 5AR0A 2LI7A 5KK4A 4UAFE 5AQYA 2QWMA 2JDQD 5FPNA 5FPEA 5AQZA 4CQKA 5AQJA 5AQOA 5AQGA 1BA1A 4KYPA 1DQ7A 2K35A 3KOZA 1I2VA 2E88A 4H5RA 1C55A 5AQVA 3GKUA 1BK8A 1HJOA 2NY9X 3CQXA 2M8BB 3L6QA 3ATUA 1ZYWA 2YIOA 1KAZA 4H5NA 4HWIA 1I6GA 1ZVEA 3GDQA 3LDPA 1ZVGA 5AQXA 1UGLA 1MR4A 3KP1A 3FZMA 1NGGA 1NGCA 4UADE 5AQFA 1I2UA 3KHWA 1OMYA 1SN1A 1LQQA 2BRZA 2QWQA 3KOYA 1NGEA 1I6FA 1NGJA 2LY6A 3LDNA 5BPNA 2V7ZA 1ZYVA 1P00A 2QXLA 1POIA 3CW4A 1VNAA 2GMOA 2YC1C 3BK3C 1BMRA 5BN8A 1NRAA 5BPMA 3AY9A 5EXWA 1JKZA 1T7AA 1L4VA 2KBJA 5AQWA 4UJ0A 1K8BA 1NRBA 2KYQA 4HHFA 3L4IA 2E3GA 2KBHA 5AQHA 1NGFA 5AQPA 5AQNA 5AQTA 1HX1A 1ZU3A 1ATSA 1KAYA 1S3XA 1JZAA 2GL1A 1NGAA 4AAZA 2N66A 2QWLA 3IUCA 3JXUA 2KPYA 5EX5A 1BA0A 2KBKA 1WMTA 2QWOA 1WT7A 3M3ZA 4HE7A 1T7BA 2SN3A 5CY0A 1PE4A 2N2QA 2A7TA 1BCGA 5F1XA 3PSMA 4H5WA 1PX9A 1T1TA 4H5TA 3KP0A 4H5VA 3FZHA 1CN2A 1SNBA 4GNIA 1NGIA 3E7UX 2MN5A 1P0AA 2QWNA 3L56A 4FSVA 1OZZA 1WWNA 1FH3A 2ATBA 3LDOA 4KBOA 2LY5A 1GPTA 1ZFUA 2E3FA 2MBKA 2KSKA 3D2EA 5EVZA 1T0ZA 1KAXA 3ATVA 2VY6A 1JXCA 3D2FA 2QWRA 1GPSA 2I61A 2G2KA 3FZLA 3I33A 3KC6A 1JZBA 2BUPA 5AQSA 3A8YA 5EY4A 1BUPA 5AQRA 2YBRC 2LN8A 2YEOA 5AQQA 2LJ7A 1VNBA 1QQOA 2ASCA 4FL9A 5BPLA 1LQIA 5AQKA 1CHZA 1KV0A 1PTXA 1QQMA 3KOWA 3QFPA 1B3CA 4AB0A 3QI7A 2E0HA 3FZFA 2E2FA 1QQNA 3SF4D 1B7DA 3LDQA 1NE5A 2N2RA 3FE1A 5FPDA 4UAEF 3HSCA 5F0XA 1NPIA 2LR3A 3D2EB 3D2FB 1TI5A 3C7NA 3LDLA 2QW9A 3R2VA 1N4NA 3FZKA 3E7RL 1AHOA
chains in the Genus database with same CATH topology
1LQHA 1SEGA 1ICAA 2B3CA 2N69A 2B68A 1SN4A 2LT8A 1T7EA 1AYJA 1DJTA 1C56A 1ZUTA 2KJAA 2LJMA 1MYNA 4AEIA 2LKBA 2KGQA 1BRZA 4V1DC 2NY8X 2MZ0A 1NH5A 2LI7A 5KK4A 4CQKA 4KYPA 1DQ7A 1I2VA 1C55A 1BK8A 2NY9X 2M8BB 1ZYWA 1I6GA 1ZVEA 1ZVGA 1MR4A 1I2UA 1OMYA 1SN1A 1LQQA 2BRZA 1I6FA 2LY6A 1ZYVA 1P00A 1VNAA 2YC1C 1NRAA 1JKZA 1T7AA 1L4VA 2KBJA 4UJ0A 1NRBA 2KYQA 4HHFA 1BMRA 2E3GA 2KBHA 1ZU3A 4AAZA 1JZAA 2GL1A 2N66A 2KPYA 2KBKA 1WMTA 5CY0A 1WT7A 4HE7A 1T7BA 2SN3A 1PE4A 2N2QA 2A7TA 1BCGA 3PSMA 1PX9A 1T1TA 1CN2A 1SNBA 3E7UX 1P0AA 1OZZA 1WWNA 1FH3A 2ATBA 2LY5A 1GPTA 1ZFUA 2E3FA 2KSKA 1T0ZA 1GPSA 1JXCA 2I61A 1JZBA 2YBRC 2YEOA 2LJ7A 1VNBA 2ASCA 1LQIA 1CHZA 1KV0A 1PTXA 1B3CA 4AB0A 2E0HA 1B7DA 1NE5A 2N2RA 1NPIA 2LR3A 1TI5A 1N4NA 3E7RL 1AHOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LQH A;  1SEG A;  1ICA A;  2B3C A;  2N69 A;  2B68 A;  1SN4 A;  2LT8 A;  1T7E A;  1AYJ A;  1DJT A;  1C56 A;  1ZUT A;  2KJA A;  2LJM A;  1MYN A;  4AEI A;  2LKB A;  2KGQ A;  1BRZ A;  4V1D C;  2NY8 X;  2MZ0 A;  1NH5 A;  2LI7 A;  5KK4 A;  4CQK A;  4KYP A;  1DQ7 A;  1I2V A;  1C55 A;  1BK8 A;  2NY9 X;  2M8B B;  1ZYW A;  1I6G A;  1ZVE A;  1ZVG A;  1MR4 A;  1I2U A;  1OMY A;  1SN1 A;  1LQQ A;  2BRZ A;  1I6F A;  2LY6 A;  1ZYV A;  1P00 A;  1VNA A;  2YC1 C;  1NRA A;  1JKZ A;  1T7A A;  1L4V A;  2KBJ A;  4UJ0 A;  1NRB A;  2KYQ A;  4HHF A;  1BMR A;  2E3G A;  2KBH A;  1ZU3 A;  4AAZ A;  1JZA A;  2GL1 A;  2N66 A;  2KPY A;  2KBK A;  1WMT A;  5CY0 A;  1WT7 A;  4HE7 A;  1T7B A;  2SN3 A;  1PE4 A;  2N2Q A;  2A7T A;  1BCG A;  3PSM A;  1PX9 A;  1T1T A;  1CN2 A;  1SNB A;  3E7U X;  1P0A A;  1OZZ A;  1WWN A;  1FH3 A;  2ATB A;  2LY5 A;  1GPT A;  1ZFU A;  2E3F A;  2KSK A;  1T0Z A;  1GPS A;  1JXC A;  2I61 A;  1JZB A;  2YBR C;  2YEO A;  2LJ7 A;  1VNB A;  2ASC A;  1LQI A;  1CHZ A;  1KV0 A;  1PTX A;  1B3C A;  4AB0 A;  2E0H A;  1B7D A;  1NE5 A;  2N2R A;  1NPI A;  2LR3 A;  1TI5 A;  1N4N A;  3E7R L;  1AHO A; 
#chains in the Genus database with same CATH topology
 1DKG D;  3KVG A;  1LQH A;  1NGB A;  5AQU A;  3QFU A;  1SEG A;  1ICA A;  2B3C A;  5F2R A;  1HPM A;  1NGH A;  2N69 A;  3GL1 A;  2B68 A;  1SN4 A;  5BN9 A;  2LT8 A;  1T7E A;  3KOX A;  1AYJ A;  1DJT A;  2YIP A;  1C56 A;  3QML A;  1ZUT A;  2KJA A;  2LJM A;  2QWP A;  1MYN A;  4AEI A;  1NGD A;  2LKB A;  2E8A A;  1XRS B;  2D56 A;  2KHO A;  2KGQ A;  3C7N B;  1BRZ A;  4V1D C;  2NY8 X;  2YIL A;  4IO8 A;  1ATR A;  5FPM A;  5AQI A;  2MZ0 A;  1NH5 A;  1YUW A;  5AQM A;  5AQL A;  5AR0 A;  2LI7 A;  5KK4 A;  4UAF E;  5AQY A;  2QWM A;  2JDQ D;  5FPN A;  5FPE A;  5AQZ A;  4CQK A;  5AQJ A;  5AQO A;  5AQG A;  1BA1 A;  4KYP A;  1DQ7 A;  2K35 A;  3KOZ A;  1I2V A;  2E88 A;  4H5R A;  1C55 A;  5AQV A;  3GKU A;  1BK8 A;  1HJO A;  2NY9 X;  3CQX A;  2M8B B;  3L6Q A;  3ATU A;  1ZYW A;  2YIO A;  1KAZ A;  4H5N A;  4HWI A;  1I6G A;  1ZVE A;  3GDQ A;  3LDP A;  1ZVG A;  5AQX A;  1UGL A;  1MR4 A;  3KP1 A;  3FZM A;  1NGG A;  1NGC A;  4UAD E;  5AQF A;  1I2U A;  3KHW A;  1OMY A;  1SN1 A;  1LQQ A;  2BRZ A;  2QWQ A;  3KOY A;  1NGE A;  1I6F A;  1NGJ A;  2LY6 A;  3LDN A;  5BPN A;  2V7Z A;  1ZYV A;  1P00 A;  2QXL A;  1POI A;  3CW4 A;  1VNA A;  2GMO A;  2YC1 C;  3BK3 C;  1BMR A;  5BN8 A;  1NRA A;  5BPM A;  3AY9 A;  5EXW A;  1JKZ A;  1T7A A;  1L4V A;  2KBJ A;  5AQW A;  4UJ0 A;  1K8B A;  1NRB A;  2KYQ A;  4HHF A;  3L4I A;  2E3G A;  2KBH A;  5AQH A;  1NGF A;  5AQP A;  5AQN A;  5AQT A;  1HX1 A;  1ZU3 A;  1ATS A;  1KAY A;  1S3X A;  1JZA A;  2GL1 A;  1NGA A;  4AAZ A;  2N66 A;  2QWL A;  3IUC A;  3JXU A;  2KPY A;  5EX5 A;  1BA0 A;  2KBK A;  1WMT A;  2QWO A;  1WT7 A;  3M3Z A;  4HE7 A;  1T7B A;  2SN3 A;  5CY0 A;  1PE4 A;  2N2Q A;  2A7T A;  1BCG A;  5F1X A;  3PSM A;  4H5W A;  1PX9 A;  1T1T A;  4H5T A;  3KP0 A;  4H5V A;  3FZH A;  1CN2 A;  1SNB A;  4GNI A;  1NGI A;  3E7U X;  2MN5 A;  1P0A A;  2QWN A;  3L56 A;  4FSV A;  1OZZ A;  1WWN A;  1FH3 A;  2ATB A;  3LDO A;  4KBO A;  2LY5 A;  1GPT A;  1ZFU A;  2E3F A;  2MBK A;  2KSK A;  3D2E A;  5EVZ A;  1T0Z A;  1KAX A;  3ATV A;  2VY6 A;  1JXC A;  3D2F A;  2QWR A;  1GPS A;  2I61 A;  2G2K A;  3FZL A;  3I33 A;  3KC6 A;  1JZB A;  2BUP A;  5AQS A;  3A8Y A;  5EY4 A;  1BUP A;  5AQR A;  2YBR C;  2LN8 A;  2YEO A;  5AQQ A;  2LJ7 A;  1VNB A;  1QQO A;  2ASC A;  4FL9 A;  5BPL A;  1LQI A;  5AQK A;  1CHZ A;  1KV0 A;  1PTX A;  1QQM A;  3KOW A;  3QFP A;  1B3C A;  4AB0 A;  3QI7 A;  2E0H A;  3FZF A;  2E2F A;  1QQN A;  3SF4 D;  1B7D A;  3LDQ A;  1NE5 A;  2N2R A;  3FE1 A;  5FPD A;  4UAE F;  3HSC A;  5F0X A;  1NPI A;  2LR3 A;  3D2E B;  3D2F B;  1TI5 A;  3C7N A;  3LDL A;  2QW9 A;  3R2V A;  1N4N A;  3FZK A;  3E7R L;  1AHO A; 
#chains in the Genus database with same CATH homology
 1LQH A;  1SEG A;  1ICA A;  2B3C A;  2N69 A;  2B68 A;  1SN4 A;  2LT8 A;  1T7E A;  1AYJ A;  1DJT A;  1C56 A;  1ZUT A;  2KJA A;  2LJM A;  1MYN A;  4AEI A;  2LKB A;  2KGQ A;  1BRZ A;  4V1D C;  2NY8 X;  2MZ0 A;  1NH5 A;  2LI7 A;  5KK4 A;  4CQK A;  4KYP A;  1DQ7 A;  1I2V A;  1C55 A;  1BK8 A;  2NY9 X;  2M8B B;  1ZYW A;  1I6G A;  1ZVE A;  1ZVG A;  1MR4 A;  1I2U A;  1OMY A;  1SN1 A;  1LQQ A;  2BRZ A;  1I6F A;  2LY6 A;  1ZYV A;  1P00 A;  1VNA A;  2YC1 C;  1NRA A;  1JKZ A;  1T7A A;  1L4V A;  2KBJ A;  4UJ0 A;  1NRB A;  2KYQ A;  4HHF A;  1BMR A;  2E3G A;  2KBH A;  1ZU3 A;  4AAZ A;  1JZA A;  2GL1 A;  2N66 A;  2KPY A;  2KBK A;  1WMT A;  5CY0 A;  1WT7 A;  4HE7 A;  1T7B A;  2SN3 A;  1PE4 A;  2N2Q A;  2A7T A;  1BCG A;  3PSM A;  1PX9 A;  1T1T A;  1CN2 A;  1SNB A;  3E7U X;  1P0A A;  1OZZ A;  1WWN A;  1FH3 A;  2ATB A;  2LY5 A;  1GPT A;  1ZFU A;  2E3F A;  2KSK A;  1T0Z A;  1GPS A;  1JXC A;  2I61 A;  1JZB A;  2YBR C;  2YEO A;  2LJ7 A;  1VNB A;  2ASC A;  1LQI A;  1CHZ A;  1KV0 A;  1PTX A;  1B3C A;  4AB0 A;  2E0H A;  1B7D A;  1NE5 A;  2N2R A;  1NPI A;  2LR3 A;  1TI5 A;  1N4N A;  3E7R L;  1AHO A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...