2VY6A

Two domains from the c-terminal region of influenza a virus polymerase pb2 subunit
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
204
structure length
196
Chain Sequence
EINGPESVLVNTYQWIIRNWETVKIQWSQNPTMLYNKMEFEPFQSLVPKAIRGQYSGFVRTLFQQMRDVLGTFDTTQIIKLLPFAAAPPKQSRMQFSSLTVNVRGSGMRILVRGNSPVFNYNKTTKRLTILGKDAGTLIEVESAVLRGFLILGKEDRRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRDS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription
molecule keywords POLYMERASE BASIC PROTEIN 2
publication title Host Determinant Residue Lysine 627 Lies on the Surface of a Discrete, Folded Domain of Influenza Virus Polymerase Pb2 Subunit
pubmed doi rcsb
source organism Influenza a virus
total genus 58
structure length 196
sequence length 204
ec nomenclature
pdb deposition date 2008-07-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.90 Alpha Beta 2-Layer Sandwich Defensin A-like Defensin A-like 2vy6A02
3CW4A 2GMOA 3KC6A 3L56A 4UAEF 3KHWA 3R2VA 4UAFE 2VY6A 2JDQD 4UADE
chains in the Genus database with same CATH superfamily
1JKZA 1XRSB 2NY8X 3L56A 1BRZA 3KP1A 5AQJA 3LDOA 5AQIA 1NRBA 1FH3A 1B7DA 1JZBA 2E0HA 2E3FA 1PTXA 2YIPA 1MYNA 1NGJA 3A8YA 2QW9A 2KBKA 1PE4A 1ICAA 1POIA 2QWRA 1KAXA 4H5NA 4HHFA 5AQMA 1P00A 2N66A 3D2EB 4KBOA 1PX9A 1GPSA 2ASCA 2KJAA 2LJMA 5F2RA 4FSVA 4IO8A 3FZKA 1NE5A 3SF4D 1DJTA 1T7EA 1VNAA 2V7ZA 3ATVA 5AQVA 2N2QA 4H5RA 2B3CA 2E2FA 1ZFUA 2QWQA 1TI5A 3I33A 2E88A 1GPTA 1C56A 1NGHA 3LDNA 1ZYVA 3KVGA 2YC1C 4UJ0A 2QXLA 1NGDA 2LKBA 1KV0A 1ZVEA 5AQRA 1LQQA 3KHWA 3LDQA 2B68A 5FPNA 2LN8A 3AY9A 5AQGA 2MZ0A 4V1DC 1T7AA 2E8AA 5F0XA 3E7UX 2I61A 2BUPA 1WWNA 3CQXA 5AQSA 2KGQA 3KOXA 1NGFA 1ZVGA 1BMRA 2M8BB 4H5TA 1CN2A 1VNBA 1JZAA 1NPIA 2SN3A 1T1TA 1AHOA 1KAZA 3IUCA 5AQQA 1UGLA 3FZMA 2YEOA 1S3XA 5BN9A 1KAYA 5BPMA 1B3CA 2D56A 1BCGA 2A7TA 5EX5A 1L4VA 3PSMA 3L6QA 1DQ7A 4HE7A 1LQHA 5AR0A 5AQWA 1QQOA 3KP0A 1SEGA 1HX1A 3FE1A 4H5WA 5BN8A 5EXWA 5EY4A 1OMYA 1NH5A 1ATSA 3KOYA 2GMOA 2LR3A 5FPEA 4UAEF 5AQLA 2MN5A 1ZU3A 3GL1A 1SN1A 3E7RL 2QWPA 2LY6A 2QWOA 2N69A 1WT7A 4UAFE 2YIOA 1ATRA 2LJ7A 3QI7A 2KPYA 4KYPA 3LDLA 1K8BA 5KK4A 1MR4A 1T0ZA 2KBHA 5AQFA 5BPLA 2KBJA 4H5VA 1HJOA 2YILA 5F1XA 1N4NA 2QWMA 1P0AA 1LQIA 2ATBA 3C7NA 1CHZA 2N2RA 3CW4A 1NGIA 1T7BA 2QWNA 3FZHA 3QMLA 1BA0A 2G2KA 1QQMA 5FPDA 3KOZA 1DKGD 3FZLA 4FL9A 1NGAA 3D2FB 4GNIA 2LI7A 5AQXA 3FZFA 1I2VA 5AQTA 3HSCA 2NY9X 2QWLA 1NGEA 1I6FA 1ZUTA 5AQOA 5AQHA 3KOWA 2KHOA 5AQNA 4CQKA 2E3GA 1BK8A 3D2FA 1SNBA 1YUWA 2YBRC 3ATUA 1NRAA 1HPMA 1ZYWA 2VY6A 3C7NB 3GDQA 4UADE 3LDPA 1C55A 5CY0A 4AB0A 2LT8A 3M3ZA 2BRZA 5AQPA 2KYQA 5AQUA 1BA1A 5FPMA 1OZZA 5EVZA 3GKUA 4HWIA 1I6GA 1AYJA 3BK3C 5AQYA 2LY5A 1BUPA 1NGCA 1WMTA 3D2EA 3JXUA 1NGBA 3KC6A 3L4IA 4AEIA 1JXCA 5AQZA 2GL1A 5AQKA 1SN4A 2KSKA 3R2VA 1I2UA 1QQNA 3QFUA 4AAZA 1NGGA 2K35A 2MBKA 3QFPA 5BPNA 2JDQD
chains in the Genus database with same CATH topology
3L56A 5AQJA 3LDOA 5AQIA 1NGJA 3A8YA 2QW9A 1POIA 2QWRA 1KAXA 4H5NA 5AQMA 4KBOA 3D2EB 5F2RA 4FSVA 4IO8A 3FZKA 3SF4D 2V7ZA 3ATVA 5AQVA 4H5RA 2E2FA 2QWQA 3I33A 2E88A 1NGHA 3LDNA 3KVGA 2QXLA 1NGDA 5AQRA 3KHWA 3LDQA 5FPNA 2LN8A 3AY9A 5AQGA 2E8AA 5F0XA 2BUPA 3CQXA 5AQSA 1NGFA 4H5TA 1KAZA 3IUCA 5AQQA 3FZMA 1S3XA 5BN9A 1KAYA 5BPMA 2D56A 5EX5A 3L6QA 5AQWA 5AR0A 1QQOA 1HX1A 3FE1A 4H5WA 5BN8A 5EXWA 5EY4A 2JDQD 1ATSA 2GMOA 5FPEA 4UAEF 5AQLA 2MN5A 3GL1A 2QWPA 2QWOA 4UAFE 2YIOA 1ATRA 3QI7A 3LDLA 5AQFA 5BPLA 4H5VA 1HJOA 2YILA 5F1XA 2QWMA 3C7NA 3FZHA 3CW4A 1NGIA 3QMLA 2QWNA 1BA0A 1QQMA 5FPDA 1DKGD 3FZLA 4FL9A 1NGAA 3D2FB 4GNIA 5AQXA 3FZFA 5AQTA 3HSCA 2QWLA 1NGEA 5AQOA 5AQHA 2KHOA 5AQNA 3D2FA 1YUWA 3ATUA 1HPMA 2VY6A 3C7NB 3GDQA 4UADE 3LDPA 3M3ZA 5AQPA 5FPMA 5AQUA 1BA1A 5EVZA 4HWIA 3BK3C 5AQYA 1BUPA 1NGCA 3D2EA 3JXUA 1NGBA 3KC6A 3L4IA 5AQZA 5AQKA 3R2VA 1QQNA 3QFUA 1NGGA 2K35A 2MBKA 3QFPA 5BPNA 2YIPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CW4 A;  2GMO A;  3KC6 A;  3L56 A;  4UAE F;  3KHW A;  3R2V A;  4UAF E;  2VY6 A;  2JDQ D;  4UAD E; 
#chains in the Genus database with same CATH topology
 1JKZ A;  1XRS B;  2NY8 X;  3L56 A;  1BRZ A;  3KP1 A;  5AQJ A;  3LDO A;  5AQI A;  1NRB A;  1FH3 A;  1B7D A;  1JZB A;  2E0H A;  2E3F A;  1PTX A;  2YIP A;  1MYN A;  1NGJ A;  3A8Y A;  2QW9 A;  2KBK A;  1PE4 A;  1ICA A;  1POI A;  2QWR A;  1KAX A;  4H5N A;  4HHF A;  5AQM A;  1P00 A;  2N66 A;  3D2E B;  4KBO A;  1PX9 A;  1GPS A;  2ASC A;  2KJA A;  2LJM A;  5F2R A;  4FSV A;  4IO8 A;  3FZK A;  1NE5 A;  3SF4 D;  1DJT A;  1T7E A;  1VNA A;  2V7Z A;  3ATV A;  5AQV A;  2N2Q A;  4H5R A;  2B3C A;  2E2F A;  1ZFU A;  2QWQ A;  1TI5 A;  3I33 A;  2E88 A;  1GPT A;  1C56 A;  1NGH A;  3LDN A;  1ZYV A;  3KVG A;  2YC1 C;  4UJ0 A;  2QXL A;  1NGD A;  2LKB A;  1KV0 A;  1ZVE A;  5AQR A;  1LQQ A;  3KHW A;  3LDQ A;  2B68 A;  5FPN A;  2LN8 A;  3AY9 A;  5AQG A;  2MZ0 A;  4V1D C;  1T7A A;  2E8A A;  5F0X A;  3E7U X;  2I61 A;  2BUP A;  1WWN A;  3CQX A;  5AQS A;  2KGQ A;  3KOX A;  1NGF A;  1ZVG A;  1BMR A;  2M8B B;  4H5T A;  1CN2 A;  1VNB A;  1JZA A;  1NPI A;  2SN3 A;  1T1T A;  1AHO A;  1KAZ A;  3IUC A;  5AQQ A;  1UGL A;  3FZM A;  2YEO A;  1S3X A;  5BN9 A;  1KAY A;  5BPM A;  1B3C A;  2D56 A;  1BCG A;  2A7T A;  5EX5 A;  1L4V A;  3PSM A;  3L6Q A;  1DQ7 A;  4HE7 A;  1LQH A;  5AR0 A;  5AQW A;  1QQO A;  3KP0 A;  1SEG A;  1HX1 A;  3FE1 A;  4H5W A;  5BN8 A;  5EXW A;  5EY4 A;  1OMY A;  1NH5 A;  1ATS A;  3KOY A;  2GMO A;  2LR3 A;  5FPE A;  4UAE F;  5AQL A;  2MN5 A;  1ZU3 A;  3GL1 A;  1SN1 A;  3E7R L;  2QWP A;  2LY6 A;  2QWO A;  2N69 A;  1WT7 A;  4UAF E;  2YIO A;  1ATR A;  2LJ7 A;  3QI7 A;  2KPY A;  4KYP A;  3LDL A;  1K8B A;  5KK4 A;  1MR4 A;  1T0Z A;  2KBH A;  5AQF A;  5BPL A;  2KBJ A;  4H5V A;  1HJO A;  2YIL A;  5F1X A;  1N4N A;  2QWM A;  1P0A A;  1LQI A;  2ATB A;  3C7N A;  1CHZ A;  2N2R A;  3CW4 A;  1NGI A;  1T7B A;  2QWN A;  3FZH A;  3QML A;  1BA0 A;  2G2K A;  1QQM A;  5FPD A;  3KOZ A;  1DKG D;  3FZL A;  4FL9 A;  1NGA A;  3D2F B;  4GNI A;  2LI7 A;  5AQX A;  3FZF A;  1I2V A;  5AQT A;  3HSC A;  2NY9 X;  2QWL A;  1NGE A;  1I6F A;  1ZUT A;  5AQO A;  5AQH A;  3KOW A;  2KHO A;  5AQN A;  4CQK A;  2E3G A;  1BK8 A;  3D2F A;  1SNB A;  1YUW A;  2YBR C;  3ATU A;  1NRA A;  1HPM A;  1ZYW A;  2VY6 A;  3C7N B;  3GDQ A;  4UAD E;  3LDP A;  1C55 A;  5CY0 A;  4AB0 A;  2LT8 A;  3M3Z A;  2BRZ A;  5AQP A;  2KYQ A;  5AQU A;  1BA1 A;  5FPM A;  1OZZ A;  5EVZ A;  3GKU A;  4HWI A;  1I6G A;  1AYJ A;  3BK3 C;  5AQY A;  2LY5 A;  1BUP A;  1NGC A;  1WMT A;  3D2E A;  3JXU A;  1NGB A;  3KC6 A;  3L4I A;  4AEI A;  1JXC A;  5AQZ A;  2GL1 A;  5AQK A;  1SN4 A;  2KSK A;  3R2V A;  1I2U A;  1QQN A;  3QFU A;  4AAZ A;  1NGG A;  2K35 A;  2MBK A;  3QFP A;  5BPN A;  2JDQ D; 
#chains in the Genus database with same CATH homology
 3L56 A;  5AQJ A;  3LDO A;  5AQI A;  1NGJ A;  3A8Y A;  2QW9 A;  1POI A;  2QWR A;  1KAX A;  4H5N A;  5AQM A;  4KBO A;  3D2E B;  5F2R A;  4FSV A;  4IO8 A;  3FZK A;  3SF4 D;  2V7Z A;  3ATV A;  5AQV A;  4H5R A;  2E2F A;  2QWQ A;  3I33 A;  2E88 A;  1NGH A;  3LDN A;  3KVG A;  2QXL A;  1NGD A;  5AQR A;  3KHW A;  3LDQ A;  5FPN A;  2LN8 A;  3AY9 A;  5AQG A;  2E8A A;  5F0X A;  2BUP A;  3CQX A;  5AQS A;  1NGF A;  4H5T A;  1KAZ A;  3IUC A;  5AQQ A;  3FZM A;  1S3X A;  5BN9 A;  1KAY A;  5BPM A;  2D56 A;  5EX5 A;  3L6Q A;  5AQW A;  5AR0 A;  1QQO A;  1HX1 A;  3FE1 A;  4H5W A;  5BN8 A;  5EXW A;  5EY4 A;  2JDQ D;  1ATS A;  2GMO A;  5FPE A;  4UAE F;  5AQL A;  2MN5 A;  3GL1 A;  2QWP A;  2QWO A;  4UAF E;  2YIO A;  1ATR A;  3QI7 A;  3LDL A;  5AQF A;  5BPL A;  4H5V A;  1HJO A;  2YIL A;  5F1X A;  2QWM A;  3C7N A;  3FZH A;  3CW4 A;  1NGI A;  3QML A;  2QWN A;  1BA0 A;  1QQM A;  5FPD A;  1DKG D;  3FZL A;  4FL9 A;  1NGA A;  3D2F B;  4GNI A;  5AQX A;  3FZF A;  5AQT A;  3HSC A;  2QWL A;  1NGE A;  5AQO A;  5AQH A;  2KHO A;  5AQN A;  3D2F A;  1YUW A;  3ATU A;  1HPM A;  2VY6 A;  3C7N B;  3GDQ A;  4UAD E;  3LDP A;  3M3Z A;  5AQP A;  5FPM A;  5AQU A;  1BA1 A;  5EVZ A;  4HWI A;  3BK3 C;  5AQY A;  1BUP A;  1NGC A;  3D2E A;  3JXU A;  1NGB A;  3KC6 A;  3L4I A;  5AQZ A;  5AQK A;  3R2V A;  1QQN A;  3QFU A;  1NGG A;  2K35 A;  2MBK A;  3QFP A;  5BPN A;  2YIP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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