1B3CA

Solution structure of a beta-neurotoxin from the new world scorpion centruroides sculpturatus ewing
Total Genus 7

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
64
structure length
64
Chain Sequence
KDGYLVEKTGCKKTCYKLGENDFCNRECKWKHIGGSYGYCYGFGCYCEGLPDSTQTWPLPNKTC

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (2-4)S3 (45-48)TIV5 (56-59)EMPTYTIV1 (18-21)S2 (37-40)AH1 (22-28)TIV3 (41-44)TIV2 (40-43)TIV4 (51-54)Updating...
connected with : NaN
molecule tags Toxin
publication title Solution structure of a beta-neurotoxin from the New World scorpion Centruroides sculpturatus Ewing.
pubmed doi rcsb
molecule keywords PROTEIN (NEUROTOXIN CSE-I)
total genus 7
structure length 64
sequence length 64
ec nomenclature
pdb deposition date 1998-12-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00537 Toxin_3 Scorpion toxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1b3cA00
1TI5A 2I61A 1T7EA 1SN4A 1PTXA 2N69A 1NRBA 2LI7A 1C55A 3E7RL 1LQIA 1JZBA 1NH5A 1ZVGA 1L4VA 2KGQA 1NE5A 1CHZA 1SEGA 1PE4A 2LKBA 5CY0A 1ICAA 1T1TA 1N4NA 2LT8A 1MYNA 2E3FA 2B68A 1OMYA 1ZUTA 4AAZA 4CQKA 1BRZA 1ZU3A 4HHFA 2ASCA 1MR4A 1AYJA 1JZAA 1AHOA 1I6GA 5KK4A 4HE7A 4AEIA 1PX9A 2YC1C 1T7AA 2LY5A 3E7UX 1CN2A 1LQQA 4UJ0A 1C56A 1T7BA 1GPSA 1ZYVA 2KPYA 1T0ZA 1DJTA 1BMRA 2B3CA 2N2RA 2N2QA 4KYPA 1JKZA 4V1DC 1B7DA 1I2UA 1GPTA 2LJMA 2KBHA 1ZYWA 2KYQA 1WT7A 2NY9X 1I2VA 1P0AA 1SNBA 4AB0A 1P00A 2E3GA 2SN3A 3PSMA 1DQ7A 1B3CA 2GL1A 2MZ0A 1FH3A 2M8BB 1BK8A 2YEOA 1VNAA 1I6FA 2LR3A 2KSKA 2KBJA 2LJ7A 1ZFUA 1KV0A 2BRZA 1NRAA 2YBRC 1NPIA 2ATBA 2KJAA 1ZVEA 2N66A 1JXCA 1OZZA 2E0HA 1VNBA 1SN1A 2A7TA 2LY6A 1WMTA 2NY8X 1WWNA 2KBKA 1LQHA 1BCGA
chains in the Genus database with same CATH superfamily
5AQYA 1TI5A 1S3XA 2I61A 1ATSA 4IO8A 2QXLA 4KBOA 5AQKA 5FPDA 2QWRA 1T7EA 5BN9A 2YIPA 2E88A 1SN4A 4UAFE 1PTXA 3KP1A 3KVGA 3D2FA 1NGIA 2N69A 1NRBA 2LI7A 5AQSA 1C55A 3E7RL 5AQOA 1LQIA 1JZBA 1NH5A 1ZVGA 1L4VA 2KGQA 1NE5A 1QQOA 1POIA 2QWOA 3QFUA 1CHZA 5AQZA 1SEGA 1PE4A 2LKBA 2GMOA 3L56A 5CY0A 1K8BA 1ICAA 1T1TA 3KOZA 1N4NA 2LT8A 2V7ZA 1MYNA 2E3FA 5FPMA 5BPNA 1NGFA 4H5VA 5AQXA 2B68A 1OMYA 1ZUTA 5FPNA 2QWPA 4AAZA 4CQKA 3M3ZA 5AQTA 5F0XA 1BRZA 3L6QA 1ZU3A 2K35A 4HHFA 2ASCA 3GL1A 1MR4A 4UAEF 5AR0A 1NGEA 1AYJA 1JZAA 1AHOA 1I6GA 3R2VA 5KK4A 1KAXA 4HE7A 1HX1A 1HJOA 3GDQA 4AEIA 1DKGD 3QMLA 1PX9A 1NGHA 2YC1C 3FZLA 5AQMA 5F1XA 2MBKA 1BUPA 5EX5A 1T7AA 2LY5A 3GKUA 3LDOA 3AY9A 3CW4A 5AQLA 3E7UX 5BN8A 2G2KA 1CN2A 5AQHA 1LQQA 4UJ0A 3JXUA 3SF4D 1C56A 1T7BA 5AQQA 5EVZA 2YILA 1GPSA 1ZYVA 5FPEA 5AQFA 3A8YA 3BK3C 1NGDA 2QW9A 2KPYA 1T0ZA 1DJTA 1BMRA 1XRSB 2B3CA 3KP0A 4H5WA 1NGCA 2N2QA 2N2RA 4KYPA 3KC6A 4AB0A 4V1DC 5AQUA 1JKZA 5EY4A 1B7DA 1I2UA 3ATUA 3KOWA 1NGJA 1QQNA 1NGAA 1GPTA 3KOXA 2LJMA 3LDQA 2KBHA 2D56A 1BA1A 1ZYWA 2KYQA 1WT7A 2NY9X 5AQJA 2MN5A 1KAYA 1ATRA 1HPMA 2KHOA 2QWMA 3FZFA 1P0AA 3HSCA 1SNBA 2YIOA 4UADE 1P00A 1NGBA 3KOYA 2E3GA 2QWNA 2SN3A 1YUWA 3PSMA 1DQ7A 2E8AA 3D2EA 3LDNA 3I33A 2GL1A 3FZMA 2MZ0A 3QFPA 5AQIA 1B3CA 2M8BB 1BK8A 1FH3A 2YEOA 2LN8A 3ATVA 4H5TA 1VNAA 3QI7A 5F2RA 1I6FA 5AQNA 3C7NB 1QQMA 2LR3A 2KSKA 2QWLA 3KHWA 5AQWA 2KBJA 2LJ7A 1ZFUA 2KBKA 1KV0A 2BRZA 1NRAA 4H5NA 2YBRC 1NPIA 2ATBA 2KJAA 5EXWA 2E2FA 5BPLA 1ZVEA 3FE1A 2N66A 4FSVA 4HWIA 2QWQA 3C7NA 1UGLA 3D2EB 3LDPA 5AQPA 1KAZA 1NGGA 1JXCA 2BUPA 3CQXA 1OZZA 2E0HA 1VNBA 1I2VA 3FZHA 2VY6A 3L4IA 1BA0A 2A7TA 2LY6A 3LDLA 5AQRA 3FZKA 5BPMA 3IUCA 1WMTA 2JDQD 2NY8X 4GNIA 5AQVA 1WWNA 5AQGA 3D2FB 4FL9A 1SN1A 4H5RA 1LQHA 1BCGA
chains in the Genus database with same CATH topology
1TI5A 2I61A 1T7EA 1SN4A 1PTXA 2N69A 1NRBA 2LI7A 1C55A 3E7RL 1LQIA 1JZBA 1NH5A 1ZVGA 1L4VA 2KGQA 1NE5A 1CHZA 1SEGA 1PE4A 2LKBA 5CY0A 1ICAA 1T1TA 1N4NA 2LT8A 1MYNA 2E3FA 2B68A 1OMYA 1ZUTA 4AAZA 4CQKA 1BRZA 1ZU3A 4HHFA 2ASCA 1MR4A 1AYJA 1JZAA 1AHOA 1I6GA 5KK4A 4HE7A 4AEIA 1PX9A 2YC1C 1T7AA 2LY5A 3E7UX 1CN2A 1LQQA 4UJ0A 1C56A 1T7BA 1GPSA 1ZYVA 2KPYA 1T0ZA 1DJTA 1BMRA 2B3CA 2N2RA 2N2QA 4KYPA 1JKZA 4V1DC 1B7DA 1I2UA 1GPTA 2LJMA 2KBHA 1ZYWA 2KYQA 1WT7A 2NY9X 1I2VA 1P0AA 1SNBA 4AB0A 1P00A 2E3GA 2SN3A 3PSMA 1DQ7A 1B3CA 2GL1A 2MZ0A 1FH3A 2M8BB 1BK8A 2YEOA 1VNAA 1I6FA 2LR3A 2KSKA 2KBJA 2LJ7A 1ZFUA 1KV0A 2BRZA 1NRAA 2YBRC 1NPIA 2ATBA 2KJAA 1ZVEA 2N66A 1JXCA 1OZZA 2E0HA 1VNBA 1SN1A 2A7TA 2LY6A 1WMTA 2NY8X 1WWNA 2KBKA 1LQHA 1BCGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TI5 A;  2I61 A;  1T7E A;  1SN4 A;  1PTX A;  2N69 A;  1NRB A;  2LI7 A;  1C55 A;  3E7R L;  1LQI A;  1JZB A;  1NH5 A;  1ZVG A;  1L4V A;  2KGQ A;  1NE5 A;  1CHZ A;  1SEG A;  1PE4 A;  2LKB A;  5CY0 A;  1ICA A;  1T1T A;  1N4N A;  2LT8 A;  1MYN A;  2E3F A;  2B68 A;  1OMY A;  1ZUT A;  4AAZ A;  4CQK A;  1BRZ A;  1ZU3 A;  4HHF A;  2ASC A;  1MR4 A;  1AYJ A;  1JZA A;  1AHO A;  1I6G A;  5KK4 A;  4HE7 A;  4AEI A;  1PX9 A;  2YC1 C;  1T7A A;  2LY5 A;  3E7U X;  1CN2 A;  1LQQ A;  4UJ0 A;  1C56 A;  1T7B A;  1GPS A;  1ZYV A;  2KPY A;  1T0Z A;  1DJT A;  1BMR A;  2B3C A;  2N2R A;  2N2Q A;  4KYP A;  1JKZ A;  4V1D C;  1B7D A;  1I2U A;  1GPT A;  2LJM A;  2KBH A;  1ZYW A;  2KYQ A;  1WT7 A;  2NY9 X;  1I2V A;  1P0A A;  1SNB A;  4AB0 A;  1P00 A;  2E3G A;  2SN3 A;  3PSM A;  1DQ7 A;  1B3C A;  2GL1 A;  2MZ0 A;  1FH3 A;  2M8B B;  1BK8 A;  2YEO A;  1VNA A;  1I6F A;  2LR3 A;  2KSK A;  2KBJ A;  2LJ7 A;  1ZFU A;  1KV0 A;  2BRZ A;  1NRA A;  2YBR C;  1NPI A;  2ATB A;  2KJA A;  1ZVE A;  2N66 A;  1JXC A;  1OZZ A;  2E0H A;  1VNB A;  1SN1 A;  2A7T A;  2LY6 A;  1WMT A;  2NY8 X;  1WWN A;  2KBK A;  1LQH A;  1BCG A; 
#chains in the Genus database with same CATH topology
 5AQY A;  1TI5 A;  1S3X A;  2I61 A;  1ATS A;  4IO8 A;  2QXL A;  4KBO A;  5AQK A;  5FPD A;  2QWR A;  1T7E A;  5BN9 A;  2YIP A;  2E88 A;  1SN4 A;  4UAF E;  1PTX A;  3KP1 A;  3KVG A;  3D2F A;  1NGI A;  2N69 A;  1NRB A;  2LI7 A;  5AQS A;  1C55 A;  3E7R L;  5AQO A;  1LQI A;  1JZB A;  1NH5 A;  1ZVG A;  1L4V A;  2KGQ A;  1NE5 A;  1QQO A;  1POI A;  2QWO A;  3QFU A;  1CHZ A;  5AQZ A;  1SEG A;  1PE4 A;  2LKB A;  2GMO A;  3L56 A;  5CY0 A;  1K8B A;  1ICA A;  1T1T A;  3KOZ A;  1N4N A;  2LT8 A;  2V7Z A;  1MYN A;  2E3F A;  5FPM A;  5BPN A;  1NGF A;  4H5V A;  5AQX A;  2B68 A;  1OMY A;  1ZUT A;  5FPN A;  2QWP A;  4AAZ A;  4CQK A;  3M3Z A;  5AQT A;  5F0X A;  1BRZ A;  3L6Q A;  1ZU3 A;  2K35 A;  4HHF A;  2ASC A;  3GL1 A;  1MR4 A;  4UAE F;  5AR0 A;  1NGE A;  1AYJ A;  1JZA A;  1AHO A;  1I6G A;  3R2V A;  5KK4 A;  1KAX A;  4HE7 A;  1HX1 A;  1HJO A;  3GDQ A;  4AEI A;  1DKG D;  3QML A;  1PX9 A;  1NGH A;  2YC1 C;  3FZL A;  5AQM A;  5F1X A;  2MBK A;  1BUP A;  5EX5 A;  1T7A A;  2LY5 A;  3GKU A;  3LDO A;  3AY9 A;  3CW4 A;  5AQL A;  3E7U X;  5BN8 A;  2G2K A;  1CN2 A;  5AQH A;  1LQQ A;  4UJ0 A;  3JXU A;  3SF4 D;  1C56 A;  1T7B A;  5AQQ A;  5EVZ A;  2YIL A;  1GPS A;  1ZYV A;  5FPE A;  5AQF A;  3A8Y A;  3BK3 C;  1NGD A;  2QW9 A;  2KPY A;  1T0Z A;  1DJT A;  1BMR A;  1XRS B;  2B3C A;  3KP0 A;  4H5W A;  1NGC A;  2N2Q A;  2N2R A;  4KYP A;  3KC6 A;  4AB0 A;  4V1D C;  5AQU A;  1JKZ A;  5EY4 A;  1B7D A;  1I2U A;  3ATU A;  3KOW A;  1NGJ A;  1QQN A;  1NGA A;  1GPT A;  3KOX A;  2LJM A;  3LDQ A;  2KBH A;  2D56 A;  1BA1 A;  1ZYW A;  2KYQ A;  1WT7 A;  2NY9 X;  5AQJ A;  2MN5 A;  1KAY A;  1ATR A;  1HPM A;  2KHO A;  2QWM A;  3FZF A;  1P0A A;  3HSC A;  1SNB A;  2YIO A;  4UAD E;  1P00 A;  1NGB A;  3KOY A;  2E3G A;  2QWN A;  2SN3 A;  1YUW A;  3PSM A;  1DQ7 A;  2E8A A;  3D2E A;  3LDN A;  3I33 A;  2GL1 A;  3FZM A;  2MZ0 A;  3QFP A;  5AQI A;  1B3C A;  2M8B B;  1BK8 A;  1FH3 A;  2YEO A;  2LN8 A;  3ATV A;  4H5T A;  1VNA A;  3QI7 A;  5F2R A;  1I6F A;  5AQN A;  3C7N B;  1QQM A;  2LR3 A;  2KSK A;  2QWL A;  3KHW A;  5AQW A;  2KBJ A;  2LJ7 A;  1ZFU A;  2KBK A;  1KV0 A;  2BRZ A;  1NRA A;  4H5N A;  2YBR C;  1NPI A;  2ATB A;  2KJA A;  5EXW A;  2E2F A;  5BPL A;  1ZVE A;  3FE1 A;  2N66 A;  4FSV A;  4HWI A;  2QWQ A;  3C7N A;  1UGL A;  3D2E B;  3LDP A;  5AQP A;  1KAZ A;  1NGG A;  1JXC A;  2BUP A;  3CQX A;  1OZZ A;  2E0H A;  1VNB A;  1I2V A;  3FZH A;  2VY6 A;  3L4I A;  1BA0 A;  2A7T A;  2LY6 A;  3LDL A;  5AQR A;  3FZK A;  5BPM A;  3IUC A;  1WMT A;  2JDQ D;  2NY8 X;  4GNI A;  5AQV A;  1WWN A;  5AQG A;  3D2F B;  4FL9 A;  1SN1 A;  4H5R A;  1LQH A;  1BCG A; 
#chains in the Genus database with same CATH homology
 1TI5 A;  2I61 A;  1T7E A;  1SN4 A;  1PTX A;  2N69 A;  1NRB A;  2LI7 A;  1C55 A;  3E7R L;  1LQI A;  1JZB A;  1NH5 A;  1ZVG A;  1L4V A;  2KGQ A;  1NE5 A;  1CHZ A;  1SEG A;  1PE4 A;  2LKB A;  5CY0 A;  1ICA A;  1T1T A;  1N4N A;  2LT8 A;  1MYN A;  2E3F A;  2B68 A;  1OMY A;  1ZUT A;  4AAZ A;  4CQK A;  1BRZ A;  1ZU3 A;  4HHF A;  2ASC A;  1MR4 A;  1AYJ A;  1JZA A;  1AHO A;  1I6G A;  5KK4 A;  4HE7 A;  4AEI A;  1PX9 A;  2YC1 C;  1T7A A;  2LY5 A;  3E7U X;  1CN2 A;  1LQQ A;  4UJ0 A;  1C56 A;  1T7B A;  1GPS A;  1ZYV A;  2KPY A;  1T0Z A;  1DJT A;  1BMR A;  2B3C A;  2N2R A;  2N2Q A;  4KYP A;  1JKZ A;  4V1D C;  1B7D A;  1I2U A;  1GPT A;  2LJM A;  2KBH A;  1ZYW A;  2KYQ A;  1WT7 A;  2NY9 X;  1I2V A;  1P0A A;  1SNB A;  4AB0 A;  1P00 A;  2E3G A;  2SN3 A;  3PSM A;  1DQ7 A;  1B3C A;  2GL1 A;  2MZ0 A;  1FH3 A;  2M8B B;  1BK8 A;  2YEO A;  1VNA A;  1I6F A;  2LR3 A;  2KSK A;  2KBJ A;  2LJ7 A;  1ZFU A;  1KV0 A;  2BRZ A;  1NRA A;  2YBR C;  1NPI A;  2ATB A;  2KJA A;  1ZVE A;  2N66 A;  1JXC A;  1OZZ A;  2E0H A;  1VNB A;  1SN1 A;  2A7T A;  2LY6 A;  1WMT A;  2NY8 X;  1WWN A;  2KBK A;  1LQH A;  1BCG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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