1BK8A

Determination of the three-dimensional solution structure of aesculus hippocastanum antimicrobial protein 1 (ah-amp1) by 1h nmr, 25 structures
Total Genus 15

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
50
structure length
50
Chain Sequence
LCNERPSQTWSGNCGNTAHCDKQCQDWEKASHGACHKRENHWKCFCYFNC

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
O1 (1-3)S1 (3-5)S2 (32-38)TIV1 (7-10)S3 (41-48)TIV3 (26-29)AH1 (17-26)EMPTYTIV2 (14-17)Updating...
connected with : NaN
molecule tags Plant defensin
publication title The three-dimensional solution structure of Aesculus hippocastanum antimicrobial protein 1 determined by 1H nuclear magnetic resonance.
pubmed doi rcsb
molecule keywords ANTIMICROBIAL PROTEIN 1
total genus 15
structure length 50
sequence length 50
ec nomenclature
pdb deposition date 1998-07-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00304 Gamma-thionin Gamma-thionin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1bk8A00
1GPTA 1L4VA 1B3CA 1AYJA 1OMYA 2NY9X 2YC1C 1JZBA 1AHOA 3PSMA 1JZAA 2LJ7A 1OZZA 1DQ7A 5CY0A 1CHZA 4CQKA 2B3CA 1BCGA 2KJAA 1DJTA 4V1DC 1PTXA 1ZU3A 2N66A 2KGQA 4AB0A 1BMRA 1ZUTA 3E7RL 5KK4A 1GPSA 1T1TA 1NPIA 2M8BB 1I6FA 2N2QA 1BK8A 1FH3A 2NY8X 1NH5A 2SN3A 2LT8A 2KPYA 1ZYWA 3E7UX 1SNBA 1ZFUA 1C56A 1PE4A 2LR3A 4HE7A 2KBJA 1JXCA 1MYNA 1N4NA 1I6GA 2LY5A 2N2RA 2E0HA 1T0ZA 1B7DA 2BRZA 1ICAA 4HHFA 1LQHA 1NRBA 1I2VA 1WT7A 2E3FA 2YBRC 2ASCA 1SN4A 2KSKA 2YEOA 1TI5A 2E3GA 1BRZA 2LJMA 1T7BA 1SEGA 1ZVEA 4UJ0A 1LQQA 1P0AA 1T7EA 2LI7A 2LY6A 2N69A 1NRAA 2LKBA 1KV0A 2KBKA 2A7TA 1SN1A 1WMTA 1VNBA 1C55A 1I2UA 4AEIA 1NE5A 2KBHA 1CN2A 1T7AA 1WWNA 2ATBA 2KYQA 4KYPA 1PX9A 2GL1A 1P00A 1MR4A 2I61A 2MZ0A 4AAZA 1ZVGA 1ZYVA 1VNAA 2B68A 1LQIA 1JKZA
chains in the Genus database with same CATH superfamily
2QWMA 3KOWA 1GPTA 4FSVA 1L4VA 3AY9A 3KOYA 4UADE 3L4IA 3CQXA 1B3CA 1AYJA 1OMYA 5FPDA 5AQQA 5AQKA 2MBKA 2NY9X 5AQYA 2YC1C 1JZBA 1AHOA 5FPNA 3JXUA 5AQZA 5F0XA 3L56A 5AQJA 3PSMA 1JZAA 2LJ7A 1OZZA 2KHOA 1DQ7A 5CY0A 1CHZA 3LDQA 3M3ZA 4CQKA 2B3CA 4UAFE 1BCGA 1HPMA 2KJAA 1NGFA 1DJTA 5AQVA 3KC6A 1NGCA 1BUPA 1NGBA 2YIPA 3KOXA 4H5TA 3KHWA 4V1DC 1XRSB 1QQOA 5AQPA 1PTXA 1ZU3A 2QWNA 3KVGA 1QQNA 5AQXA 3L6QA 2N66A 3LDLA 1HJOA 5AQSA 1NGGA 2KGQA 2LN8A 3D2EA 2MN5A 4AB0A 1UGLA 3CW4A 3BK3C 1BMRA 1BA0A 1ZUTA 2E8AA 2G2KA 4H5NA 3E7RL 2VY6A 3D2FA 5KK4A 5BPNA 1KAYA 2E88A 1GPSA 1T1TA 5AQMA 1NPIA 5AQRA 3LDPA 2E2FA 2M8BB 1I6FA 5BN8A 5AQGA 2N2QA 5FPMA 3GDQA 1BK8A 5EX5A 1FH3A 2NY8X 1NH5A 2SN3A 3FZFA 2LT8A 2BUPA 1ATRA 1ATSA 2KPYA 1ZYWA 3FZHA 3LDOA 5AQIA 3E7UX 3A8YA 1SNBA 5AQLA 1ZFUA 4FL9A 1NGDA 1C56A 1PE4A 2LR3A 3GL1A 5AQOA 4HE7A 5EY4A 3FE1A 2KBJA 5AQFA 1JXCA 1MYNA 1N4NA 3LDNA 1I6GA 4H5WA 2LY5A 2N2RA 3C7NB 2E0HA 1NGAA 1NGHA 1T0ZA 5F2RA 1B7DA 2BRZA 1ICAA 5FPEA 3HSCA 4HHFA 4UAEF 1LQHA 1NRBA 1YUWA 1I2VA 1WT7A 2E3FA 2YILA 3FZMA 2YBRC 4KBOA 5AQTA 1NGJA 2ASCA 5AQWA 4H5VA 2QWQA 4HWIA 1S3XA 1BA1A 1SN4A 2KSKA 5AQNA 2YEOA 3R2VA 2QW9A 2JDQD 2YIOA 3ATVA 1TI5A 2E3GA 1BRZA 2LJMA 1T7BA 1SEGA 2V7ZA 2QWRA 1K8BA 1ZVEA 3ATUA 4IO8A 4UJ0A 1LQQA 1P0AA 1T7EA 2LI7A 1HX1A 3SF4D 2LY6A 3GKUA 5EVZA 2N69A 3C7NA 3KP0A 1NRAA 3QFPA 2LKBA 4GNIA 1NGIA 1KV0A 2GMOA 2A7TA 1SN1A 2KBKA 1DKGD 3KP1A 3D2FB 3FZKA 2QXLA 1WMTA 1VNBA 3QMLA 1C55A 5F1XA 5BPMA 2QWLA 1I2UA 3I33A 4AEIA 1NE5A 3QI7A 2KBHA 1POIA 2K35A 1CN2A 1QQMA 3FZLA 4H5RA 3IUCA 1T7AA 1WWNA 3KOZA 2ATBA 3QFUA 2KYQA 4KYPA 5AQHA 1PX9A 2GL1A 1P00A 1MR4A 2I61A 2MZ0A 2QWOA 2QWPA 5AQUA 1NGEA 4AAZA 1KAXA 5AR0A 1ZVGA 5BPLA 1ZYVA 2D56A 1VNAA 5BN9A 3D2EB 1KAZA 2B68A 1LQIA 1JKZA 5EXWA
chains in the Genus database with same CATH topology
1GPTA 1L4VA 1B3CA 1AYJA 1OMYA 2NY9X 2YC1C 1JZBA 1AHOA 3PSMA 1JZAA 2LJ7A 1OZZA 1DQ7A 5CY0A 1CHZA 4CQKA 2B3CA 1BCGA 2KJAA 1DJTA 4V1DC 1PTXA 1ZU3A 2N66A 2KGQA 4AB0A 1BMRA 1ZUTA 3E7RL 5KK4A 1GPSA 1T1TA 1NPIA 2M8BB 1I6FA 2N2QA 1BK8A 1FH3A 2NY8X 1NH5A 2SN3A 2LT8A 2KPYA 1ZYWA 3E7UX 1SNBA 1ZFUA 1C56A 1PE4A 2LR3A 4HE7A 2KBJA 1JXCA 1MYNA 1N4NA 1I6GA 2LY5A 2N2RA 2E0HA 1T0ZA 1B7DA 2BRZA 1ICAA 4HHFA 1LQHA 1NRBA 1I2VA 1WT7A 2E3FA 2YBRC 2ASCA 1SN4A 2KSKA 2YEOA 1TI5A 2E3GA 1BRZA 2LJMA 1T7BA 1SEGA 1ZVEA 4UJ0A 1LQQA 1P0AA 1T7EA 2LI7A 2LY6A 2N69A 1NRAA 2LKBA 1KV0A 2KBKA 2A7TA 1SN1A 1WMTA 1VNBA 1C55A 1I2UA 4AEIA 1NE5A 2KBHA 1CN2A 1T7AA 1WWNA 2ATBA 2KYQA 4KYPA 1PX9A 2GL1A 1P00A 1MR4A 2I61A 2MZ0A 4AAZA 1ZVGA 1ZYVA 1VNAA 2B68A 1LQIA 1JKZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GPT A;  1L4V A;  1B3C A;  1AYJ A;  1OMY A;  2NY9 X;  2YC1 C;  1JZB A;  1AHO A;  3PSM A;  1JZA A;  2LJ7 A;  1OZZ A;  1DQ7 A;  5CY0 A;  1CHZ A;  4CQK A;  2B3C A;  1BCG A;  2KJA A;  1DJT A;  4V1D C;  1PTX A;  1ZU3 A;  2N66 A;  2KGQ A;  4AB0 A;  1BMR A;  1ZUT A;  3E7R L;  5KK4 A;  1GPS A;  1T1T A;  1NPI A;  2M8B B;  1I6F A;  2N2Q A;  1BK8 A;  1FH3 A;  2NY8 X;  1NH5 A;  2SN3 A;  2LT8 A;  2KPY A;  1ZYW A;  3E7U X;  1SNB A;  1ZFU A;  1C56 A;  1PE4 A;  2LR3 A;  4HE7 A;  2KBJ A;  1JXC A;  1MYN A;  1N4N A;  1I6G A;  2LY5 A;  2N2R A;  2E0H A;  1T0Z A;  1B7D A;  2BRZ A;  1ICA A;  4HHF A;  1LQH A;  1NRB A;  1I2V A;  1WT7 A;  2E3F A;  2YBR C;  2ASC A;  1SN4 A;  2KSK A;  2YEO A;  1TI5 A;  2E3G A;  1BRZ A;  2LJM A;  1T7B A;  1SEG A;  1ZVE A;  4UJ0 A;  1LQQ A;  1P0A A;  1T7E A;  2LI7 A;  2LY6 A;  2N69 A;  1NRA A;  2LKB A;  1KV0 A;  2KBK A;  2A7T A;  1SN1 A;  1WMT A;  1VNB A;  1C55 A;  1I2U A;  4AEI A;  1NE5 A;  2KBH A;  1CN2 A;  1T7A A;  1WWN A;  2ATB A;  2KYQ A;  4KYP A;  1PX9 A;  2GL1 A;  1P00 A;  1MR4 A;  2I61 A;  2MZ0 A;  4AAZ A;  1ZVG A;  1ZYV A;  1VNA A;  2B68 A;  1LQI A;  1JKZ A; 
#chains in the Genus database with same CATH topology
 2QWM A;  3KOW A;  1GPT A;  4FSV A;  1L4V A;  3AY9 A;  3KOY A;  4UAD E;  3L4I A;  3CQX A;  1B3C A;  1AYJ A;  1OMY A;  5FPD A;  5AQQ A;  5AQK A;  2MBK A;  2NY9 X;  5AQY A;  2YC1 C;  1JZB A;  1AHO A;  5FPN A;  3JXU A;  5AQZ A;  5F0X A;  3L56 A;  5AQJ A;  3PSM A;  1JZA A;  2LJ7 A;  1OZZ A;  2KHO A;  1DQ7 A;  5CY0 A;  1CHZ A;  3LDQ A;  3M3Z A;  4CQK A;  2B3C A;  4UAF E;  1BCG A;  1HPM A;  2KJA A;  1NGF A;  1DJT A;  5AQV A;  3KC6 A;  1NGC A;  1BUP A;  1NGB A;  2YIP A;  3KOX A;  4H5T A;  3KHW A;  4V1D C;  1XRS B;  1QQO A;  5AQP A;  1PTX A;  1ZU3 A;  2QWN A;  3KVG A;  1QQN A;  5AQX A;  3L6Q A;  2N66 A;  3LDL A;  1HJO A;  5AQS A;  1NGG A;  2KGQ A;  2LN8 A;  3D2E A;  2MN5 A;  4AB0 A;  1UGL A;  3CW4 A;  3BK3 C;  1BMR A;  1BA0 A;  1ZUT A;  2E8A A;  2G2K A;  4H5N A;  3E7R L;  2VY6 A;  3D2F A;  5KK4 A;  5BPN A;  1KAY A;  2E88 A;  1GPS A;  1T1T A;  5AQM A;  1NPI A;  5AQR A;  3LDP A;  2E2F A;  2M8B B;  1I6F A;  5BN8 A;  5AQG A;  2N2Q A;  5FPM A;  3GDQ A;  1BK8 A;  5EX5 A;  1FH3 A;  2NY8 X;  1NH5 A;  2SN3 A;  3FZF A;  2LT8 A;  2BUP A;  1ATR A;  1ATS A;  2KPY A;  1ZYW A;  3FZH A;  3LDO A;  5AQI A;  3E7U X;  3A8Y A;  1SNB A;  5AQL A;  1ZFU A;  4FL9 A;  1NGD A;  1C56 A;  1PE4 A;  2LR3 A;  3GL1 A;  5AQO A;  4HE7 A;  5EY4 A;  3FE1 A;  2KBJ A;  5AQF A;  1JXC A;  1MYN A;  1N4N A;  3LDN A;  1I6G A;  4H5W A;  2LY5 A;  2N2R A;  3C7N B;  2E0H A;  1NGA A;  1NGH A;  1T0Z A;  5F2R A;  1B7D A;  2BRZ A;  1ICA A;  5FPE A;  3HSC A;  4HHF A;  4UAE F;  1LQH A;  1NRB A;  1YUW A;  1I2V A;  1WT7 A;  2E3F A;  2YIL A;  3FZM A;  2YBR C;  4KBO A;  5AQT A;  1NGJ A;  2ASC A;  5AQW A;  4H5V A;  2QWQ A;  4HWI A;  1S3X A;  1BA1 A;  1SN4 A;  2KSK A;  5AQN A;  2YEO A;  3R2V A;  2QW9 A;  2JDQ D;  2YIO A;  3ATV A;  1TI5 A;  2E3G A;  1BRZ A;  2LJM A;  1T7B A;  1SEG A;  2V7Z A;  2QWR A;  1K8B A;  1ZVE A;  3ATU A;  4IO8 A;  4UJ0 A;  1LQQ A;  1P0A A;  1T7E A;  2LI7 A;  1HX1 A;  3SF4 D;  2LY6 A;  3GKU A;  5EVZ A;  2N69 A;  3C7N A;  3KP0 A;  1NRA A;  3QFP A;  2LKB A;  4GNI A;  1NGI A;  1KV0 A;  2GMO A;  2A7T A;  1SN1 A;  2KBK A;  1DKG D;  3KP1 A;  3D2F B;  3FZK A;  2QXL A;  1WMT A;  1VNB A;  3QML A;  1C55 A;  5F1X A;  5BPM A;  2QWL A;  1I2U A;  3I33 A;  4AEI A;  1NE5 A;  3QI7 A;  2KBH A;  1POI A;  2K35 A;  1CN2 A;  1QQM A;  3FZL A;  4H5R A;  3IUC A;  1T7A A;  1WWN A;  3KOZ A;  2ATB A;  3QFU A;  2KYQ A;  4KYP A;  5AQH A;  1PX9 A;  2GL1 A;  1P00 A;  1MR4 A;  2I61 A;  2MZ0 A;  2QWO A;  2QWP A;  5AQU A;  1NGE A;  4AAZ A;  1KAX A;  5AR0 A;  1ZVG A;  5BPL A;  1ZYV A;  2D56 A;  1VNA A;  5BN9 A;  3D2E B;  1KAZ A;  2B68 A;  1LQI A;  1JKZ A;  5EXW A; 
#chains in the Genus database with same CATH homology
 1GPT A;  1L4V A;  1B3C A;  1AYJ A;  1OMY A;  2NY9 X;  2YC1 C;  1JZB A;  1AHO A;  3PSM A;  1JZA A;  2LJ7 A;  1OZZ A;  1DQ7 A;  5CY0 A;  1CHZ A;  4CQK A;  2B3C A;  1BCG A;  2KJA A;  1DJT A;  4V1D C;  1PTX A;  1ZU3 A;  2N66 A;  2KGQ A;  4AB0 A;  1BMR A;  1ZUT A;  3E7R L;  5KK4 A;  1GPS A;  1T1T A;  1NPI A;  2M8B B;  1I6F A;  2N2Q A;  1BK8 A;  1FH3 A;  2NY8 X;  1NH5 A;  2SN3 A;  2LT8 A;  2KPY A;  1ZYW A;  3E7U X;  1SNB A;  1ZFU A;  1C56 A;  1PE4 A;  2LR3 A;  4HE7 A;  2KBJ A;  1JXC A;  1MYN A;  1N4N A;  1I6G A;  2LY5 A;  2N2R A;  2E0H A;  1T0Z A;  1B7D A;  2BRZ A;  1ICA A;  4HHF A;  1LQH A;  1NRB A;  1I2V A;  1WT7 A;  2E3F A;  2YBR C;  2ASC A;  1SN4 A;  2KSK A;  2YEO A;  1TI5 A;  2E3G A;  1BRZ A;  2LJM A;  1T7B A;  1SEG A;  1ZVE A;  4UJ0 A;  1LQQ A;  1P0A A;  1T7E A;  2LI7 A;  2LY6 A;  2N69 A;  1NRA A;  2LKB A;  1KV0 A;  2KBK A;  2A7T A;  1SN1 A;  1WMT A;  1VNB A;  1C55 A;  1I2U A;  4AEI A;  1NE5 A;  2KBH A;  1CN2 A;  1T7A A;  1WWN A;  2ATB A;  2KYQ A;  4KYP A;  1PX9 A;  2GL1 A;  1P00 A;  1MR4 A;  2I61 A;  2MZ0 A;  4AAZ A;  1ZVG A;  1ZYV A;  1VNA A;  2B68 A;  1LQI A;  1JKZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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