1GPTA

Solution structure of gamma 1-h and gamma 1-p thionins from barley and wheat endosperm determined by 1h-nmr: a structural motif common to toxic arthropod proteins
Total Genus 15

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
47
structure length
47
Chain Sequence
RICRRRSAGFKGPCVSNKNCAQVCMQEGWGGGNCDGPLRRCKCMRRC

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (2-6)TII1 (7-10)O1 (10-12)S3 (40-46)TVIII1 (14-17)TII'1 (35-38)TVIII2 (38-41)S2 (31-35)AH1 (17-27)Updating...
connected with : NaN
molecule tags Plant toxin
source organism Hordeum vulgare
publication title Solution structure of gamma 1-H and gamma 1-P thionins from barley and wheat endosperm determined by 1H-NMR: a structural motif common to toxic arthropod proteins.
pubmed doi rcsb
molecule keywords GAMMA-1-H THIONIN
total genus 15
structure length 47
sequence length 47
ec nomenclature
pdb deposition date 1992-07-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00304 Gamma-thionin Gamma-thionin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1gptA00
4V1DC 1PX9A 3E7RL 1P00A 1T7AA 2KBJA 2LJ7A 1JZBA 1I6FA 1B7DA 1ZVEA 2N2QA 2YEOA 1JZAA 1ZYVA 1LQQA 1DJTA 2B3CA 2ASCA 1NRAA 1SN4A 1KV0A 4KYPA 1WT7A 1SN1A 2N2RA 1CN2A 1ZU3A 1MR4A 1NPIA 1ZFUA 2N69A 3PSMA 1JXCA 1P0AA 2KGQA 2LI7A 1T0ZA 1NRBA 2LY5A 2A7TA 2MZ0A 1N4NA 5KK4A 1VNAA 3E7UX 1PE4A 1WWNA 2M8BB 2ATBA 2KBHA 2YC1C 1ZYWA 1JKZA 1ZVGA 2BRZA 1I2UA 1BMRA 1GPTA 1I2VA 1B3CA 2N66A 1ZUTA 2E3FA 2NY9X 2LY6A 1MYNA 1T7EA 2KPYA 1PTXA 1I6GA 1WMTA 4AEIA 1T7BA 2KJAA 4AAZA 1BRZA 4HE7A 2E3GA 4CQKA 4HHFA 2LT8A 1OMYA 1T1TA 1GPSA 1AHOA 1DQ7A 1TI5A 2I61A 2KBKA 1NE5A 1SNBA 2KSKA 1BCGA 2NY8X 2LKBA 4UJ0A 1VNBA 1C56A 2B68A 2LR3A 2GL1A 1AYJA 4AB0A 1LQIA 1C55A 1FH3A 2E0HA 1ICAA 1L4VA 2YBRC 1CHZA 1NH5A 1LQHA 2KYQA 5CY0A 1BK8A 2SN3A 1OZZA 1SEGA 2LJMA
chains in the Genus database with same CATH superfamily
4V1DC 2QWPA 1NGHA 4GNIA 5AQVA 2QXLA 1PX9A 1BA1A 2VY6A 3E7RL 4UAFE 4UADE 5FPEA 1P00A 2YILA 3IUCA 1T7AA 2KBJA 2GMOA 2QWRA 1BUPA 5EXWA 2YIOA 2LJ7A 4UAEF 5AQQA 1JZBA 3FZKA 1I6FA 1B7DA 1ZVEA 2N2QA 2YEOA 4H5VA 2BUPA 5AQIA 1JZAA 3LDNA 5AQFA 3SF4D 5BPNA 2MN5A 1BA0A 1ZYVA 1NGFA 1XRSB 2QWOA 3D2FB 2E2FA 4FSVA 1LQQA 2QW9A 1DJTA 2E88A 4H5TA 2B3CA 3HSCA 2ASCA 5F0XA 1NRAA 5FPMA 3KP0A 3LDLA 1SN4A 1KV0A 3FZLA 4KYPA 5F2RA 3CW4A 3D2FA 5BPLA 4HWIA 1WT7A 5AQTA 1SN1A 2N2RA 1CN2A 1ZU3A 1MR4A 1NPIA 1ZFUA 2N69A 3PSMA 1NGBA 1JXCA 1P0AA 2KGQA 2LI7A 1S3XA 4IO8A 5BN8A 1T0ZA 3ATVA 5AQZA 1NGJA 3CQXA 1NRBA 5AQXA 2LY5A 1UGLA 1HX1A 1POIA 3I33A 2A7TA 2MZ0A 1QQOA 1N4NA 2D56A 5AQOA 5F1XA 5KK4A 1VNAA 3BK3C 3E7UX 1PE4A 1WWNA 3KOYA 2JDQD 2ATBA 2M8BB 2KBHA 3AY9A 2YC1C 3FZHA 5AQLA 3LDQA 1ZYWA 1JKZA 3M3ZA 1ZVGA 2BRZA 1I2UA 1BMRA 1GPTA 2V7ZA 5AQYA 1I2VA 3A8YA 1B3CA 4H5RA 2LN8A 2N66A 1ZUTA 1NGDA 2E3FA 3FZMA 1HJOA 1HPMA 3QFPA 2NY9X 2LY6A 5AQPA 1T7EA 1MYNA 1KAXA 1NGGA 5AQRA 2KPYA 3JXUA 1PTXA 5BPMA 5FPDA 1I6GA 3LDPA 1WMTA 1QQNA 4AEIA 1NGEA 1T7BA 5AQGA 2K35A 4H5NA 1NGIA 4FL9A 1K8BA 2KJAA 4AAZA 2E8AA 3C7NB 3GL1A 1YUWA 3QI7A 1BRZA 4HE7A 3KHWA 3L6QA 2E3GA 5EX5A 2QWQA 3C7NA 3QFUA 4HHFA 4CQKA 2YIPA 3D2EB 2LT8A 5AQHA 1OMYA 1ATRA 5AQSA 1T1TA 5FPNA 1GPSA 2QWMA 4KBOA 1AHOA 1DQ7A 1TI5A 2I61A 2KBKA 2KHOA 2QWNA 3KP1A 5AQJA 3KOXA 3D2EA 3KC6A 5AR0A 3L4IA 1NE5A 1NGCA 3ATUA 5AQWA 1SNBA 2G2KA 2KSKA 1BCGA 3KVGA 2NY8X 5EVZA 5AQNA 1KAYA 2LKBA 4UJ0A 1VNBA 3GKUA 1C56A 1KAZA 2B68A 3R2VA 3KOZA 2LR3A 2GL1A 3QMLA 4AB0A 1AYJA 1LQIA 1C55A 1ATSA 5EY4A 2QWLA 1FH3A 2E0HA 3LDOA 3L56A 1DKGD 3GDQA 1ICAA 3KOWA 4H5WA 1L4VA 2YBRC 5AQKA 1NGAA 1CHZA 1NH5A 5AQMA 1LQHA 5AQUA 2KYQA 1QQMA 5BN9A 3FE1A 3FZFA 5CY0A 2MBKA 1BK8A 2SN3A 1OZZA 1SEGA 2LJMA
chains in the Genus database with same CATH topology
4V1DC 1PX9A 3E7RL 1P00A 1T7AA 2KBJA 2LJ7A 1JZBA 1I6FA 1B7DA 1ZVEA 2N2QA 2YEOA 1JZAA 1ZYVA 1LQQA 1DJTA 2B3CA 2ASCA 1NRAA 1SN4A 1KV0A 4KYPA 1WT7A 1SN1A 2N2RA 1CN2A 1ZU3A 1MR4A 1NPIA 1ZFUA 2N69A 3PSMA 1JXCA 1P0AA 2KGQA 2LI7A 1T0ZA 1NRBA 2LY5A 2A7TA 2MZ0A 1N4NA 5KK4A 1VNAA 3E7UX 1PE4A 1WWNA 2M8BB 2ATBA 2KBHA 2YC1C 1ZYWA 1JKZA 1ZVGA 2BRZA 1I2UA 1BMRA 1GPTA 1I2VA 1B3CA 2N66A 1ZUTA 2E3FA 2NY9X 2LY6A 1MYNA 1T7EA 2KPYA 1PTXA 1I6GA 1WMTA 4AEIA 1T7BA 2KJAA 4AAZA 1BRZA 4HE7A 2E3GA 4CQKA 4HHFA 2LT8A 1OMYA 1T1TA 1GPSA 1AHOA 1DQ7A 1TI5A 2I61A 2KBKA 1NE5A 1SNBA 2KSKA 1BCGA 2NY8X 2LKBA 4UJ0A 1VNBA 1C56A 2B68A 2LR3A 2GL1A 1AYJA 4AB0A 1LQIA 1C55A 1FH3A 2E0HA 1ICAA 1L4VA 2YBRC 1CHZA 1NH5A 1LQHA 2KYQA 5CY0A 1BK8A 2SN3A 1OZZA 1SEGA 2LJMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4V1D C;  1PX9 A;  3E7R L;  1P00 A;  1T7A A;  2KBJ A;  2LJ7 A;  1JZB A;  1I6F A;  1B7D A;  1ZVE A;  2N2Q A;  2YEO A;  1JZA A;  1ZYV A;  1LQQ A;  1DJT A;  2B3C A;  2ASC A;  1NRA A;  1SN4 A;  1KV0 A;  4KYP A;  1WT7 A;  1SN1 A;  2N2R A;  1CN2 A;  1ZU3 A;  1MR4 A;  1NPI A;  1ZFU A;  2N69 A;  3PSM A;  1JXC A;  1P0A A;  2KGQ A;  2LI7 A;  1T0Z A;  1NRB A;  2LY5 A;  2A7T A;  2MZ0 A;  1N4N A;  5KK4 A;  1VNA A;  3E7U X;  1PE4 A;  1WWN A;  2M8B B;  2ATB A;  2KBH A;  2YC1 C;  1ZYW A;  1JKZ A;  1ZVG A;  2BRZ A;  1I2U A;  1BMR A;  1GPT A;  1I2V A;  1B3C A;  2N66 A;  1ZUT A;  2E3F A;  2NY9 X;  2LY6 A;  1MYN A;  1T7E A;  2KPY A;  1PTX A;  1I6G A;  1WMT A;  4AEI A;  1T7B A;  2KJA A;  4AAZ A;  1BRZ A;  4HE7 A;  2E3G A;  4CQK A;  4HHF A;  2LT8 A;  1OMY A;  1T1T A;  1GPS A;  1AHO A;  1DQ7 A;  1TI5 A;  2I61 A;  2KBK A;  1NE5 A;  1SNB A;  2KSK A;  1BCG A;  2NY8 X;  2LKB A;  4UJ0 A;  1VNB A;  1C56 A;  2B68 A;  2LR3 A;  2GL1 A;  1AYJ A;  4AB0 A;  1LQI A;  1C55 A;  1FH3 A;  2E0H A;  1ICA A;  1L4V A;  2YBR C;  1CHZ A;  1NH5 A;  1LQH A;  2KYQ A;  5CY0 A;  1BK8 A;  2SN3 A;  1OZZ A;  1SEG A;  2LJM A; 
#chains in the Genus database with same CATH topology
 4V1D C;  2QWP A;  1NGH A;  4GNI A;  5AQV A;  2QXL A;  1PX9 A;  1BA1 A;  2VY6 A;  3E7R L;  4UAF E;  4UAD E;  5FPE A;  1P00 A;  2YIL A;  3IUC A;  1T7A A;  2KBJ A;  2GMO A;  2QWR A;  1BUP A;  5EXW A;  2YIO A;  2LJ7 A;  4UAE F;  5AQQ A;  1JZB A;  3FZK A;  1I6F A;  1B7D A;  1ZVE A;  2N2Q A;  2YEO A;  4H5V A;  2BUP A;  5AQI A;  1JZA A;  3LDN A;  5AQF A;  3SF4 D;  5BPN A;  2MN5 A;  1BA0 A;  1ZYV A;  1NGF A;  1XRS B;  2QWO A;  3D2F B;  2E2F A;  4FSV A;  1LQQ A;  2QW9 A;  1DJT A;  2E88 A;  4H5T A;  2B3C A;  3HSC A;  2ASC A;  5F0X A;  1NRA A;  5FPM A;  3KP0 A;  3LDL A;  1SN4 A;  1KV0 A;  3FZL A;  4KYP A;  5F2R A;  3CW4 A;  3D2F A;  5BPL A;  4HWI A;  1WT7 A;  5AQT A;  1SN1 A;  2N2R A;  1CN2 A;  1ZU3 A;  1MR4 A;  1NPI A;  1ZFU A;  2N69 A;  3PSM A;  1NGB A;  1JXC A;  1P0A A;  2KGQ A;  2LI7 A;  1S3X A;  4IO8 A;  5BN8 A;  1T0Z A;  3ATV A;  5AQZ A;  1NGJ A;  3CQX A;  1NRB A;  5AQX A;  2LY5 A;  1UGL A;  1HX1 A;  1POI A;  3I33 A;  2A7T A;  2MZ0 A;  1QQO A;  1N4N A;  2D56 A;  5AQO A;  5F1X A;  5KK4 A;  1VNA A;  3BK3 C;  3E7U X;  1PE4 A;  1WWN A;  3KOY A;  2JDQ D;  2ATB A;  2M8B B;  2KBH A;  3AY9 A;  2YC1 C;  3FZH A;  5AQL A;  3LDQ A;  1ZYW A;  1JKZ A;  3M3Z A;  1ZVG A;  2BRZ A;  1I2U A;  1BMR A;  1GPT A;  2V7Z A;  5AQY A;  1I2V A;  3A8Y A;  1B3C A;  4H5R A;  2LN8 A;  2N66 A;  1ZUT A;  1NGD A;  2E3F A;  3FZM A;  1HJO A;  1HPM A;  3QFP A;  2NY9 X;  2LY6 A;  5AQP A;  1T7E A;  1MYN A;  1KAX A;  1NGG A;  5AQR A;  2KPY A;  3JXU A;  1PTX A;  5BPM A;  5FPD A;  1I6G A;  3LDP A;  1WMT A;  1QQN A;  4AEI A;  1NGE A;  1T7B A;  5AQG A;  2K35 A;  4H5N A;  1NGI A;  4FL9 A;  1K8B A;  2KJA A;  4AAZ A;  2E8A A;  3C7N B;  3GL1 A;  1YUW A;  3QI7 A;  1BRZ A;  4HE7 A;  3KHW A;  3L6Q A;  2E3G A;  5EX5 A;  2QWQ A;  3C7N A;  3QFU A;  4HHF A;  4CQK A;  2YIP A;  3D2E B;  2LT8 A;  5AQH A;  1OMY A;  1ATR A;  5AQS A;  1T1T A;  5FPN A;  1GPS A;  2QWM A;  4KBO A;  1AHO A;  1DQ7 A;  1TI5 A;  2I61 A;  2KBK A;  2KHO A;  2QWN A;  3KP1 A;  5AQJ A;  3KOX A;  3D2E A;  3KC6 A;  5AR0 A;  3L4I A;  1NE5 A;  1NGC A;  3ATU A;  5AQW A;  1SNB A;  2G2K A;  2KSK A;  1BCG A;  3KVG A;  2NY8 X;  5EVZ A;  5AQN A;  1KAY A;  2LKB A;  4UJ0 A;  1VNB A;  3GKU A;  1C56 A;  1KAZ A;  2B68 A;  3R2V A;  3KOZ A;  2LR3 A;  2GL1 A;  3QML A;  4AB0 A;  1AYJ A;  1LQI A;  1C55 A;  1ATS A;  5EY4 A;  2QWL A;  1FH3 A;  2E0H A;  3LDO A;  3L56 A;  1DKG D;  3GDQ A;  1ICA A;  3KOW A;  4H5W A;  1L4V A;  2YBR C;  5AQK A;  1NGA A;  1CHZ A;  1NH5 A;  5AQM A;  1LQH A;  5AQU A;  2KYQ A;  1QQM A;  5BN9 A;  3FE1 A;  3FZF A;  5CY0 A;  2MBK A;  1BK8 A;  2SN3 A;  1OZZ A;  1SEG A;  2LJM A; 
#chains in the Genus database with same CATH homology
 4V1D C;  1PX9 A;  3E7R L;  1P00 A;  1T7A A;  2KBJ A;  2LJ7 A;  1JZB A;  1I6F A;  1B7D A;  1ZVE A;  2N2Q A;  2YEO A;  1JZA A;  1ZYV A;  1LQQ A;  1DJT A;  2B3C A;  2ASC A;  1NRA A;  1SN4 A;  1KV0 A;  4KYP A;  1WT7 A;  1SN1 A;  2N2R A;  1CN2 A;  1ZU3 A;  1MR4 A;  1NPI A;  1ZFU A;  2N69 A;  3PSM A;  1JXC A;  1P0A A;  2KGQ A;  2LI7 A;  1T0Z A;  1NRB A;  2LY5 A;  2A7T A;  2MZ0 A;  1N4N A;  5KK4 A;  1VNA A;  3E7U X;  1PE4 A;  1WWN A;  2M8B B;  2ATB A;  2KBH A;  2YC1 C;  1ZYW A;  1JKZ A;  1ZVG A;  2BRZ A;  1I2U A;  1BMR A;  1GPT A;  1I2V A;  1B3C A;  2N66 A;  1ZUT A;  2E3F A;  2NY9 X;  2LY6 A;  1MYN A;  1T7E A;  2KPY A;  1PTX A;  1I6G A;  1WMT A;  4AEI A;  1T7B A;  2KJA A;  4AAZ A;  1BRZ A;  4HE7 A;  2E3G A;  4CQK A;  4HHF A;  2LT8 A;  1OMY A;  1T1T A;  1GPS A;  1AHO A;  1DQ7 A;  1TI5 A;  2I61 A;  2KBK A;  1NE5 A;  1SNB A;  2KSK A;  1BCG A;  2NY8 X;  2LKB A;  4UJ0 A;  1VNB A;  1C56 A;  2B68 A;  2LR3 A;  2GL1 A;  1AYJ A;  4AB0 A;  1LQI A;  1C55 A;  1FH3 A;  2E0H A;  1ICA A;  1L4V A;  2YBR C;  1CHZ A;  1NH5 A;  1LQH A;  2KYQ A;  5CY0 A;  1BK8 A;  2SN3 A;  1OZZ A;  1SEG A;  2LJM A; 
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