1JKZA

Nmr solution structure of pisum sativum defensin 1 (psd1)
Total Genus 7

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
46
structure length
46
Chain Sequence
KTCEHLADTYRGVCFTNASCDDHCKNKAHLISGTCHNWKCFCTQNC

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S3 (39-45)TIV1 (7-10)EMPTYAH1 (17-27)S2 (32-36)O1 (28-30)S1 (2-6)Updating...
connected with : NaN
molecule tags Antifungal protein
publication title Solution structure of Pisum sativum defensin 1 by high resolution NMR: plant defensins, identical backbone with different mechanisms of action.
pubmed doi rcsb
molecule keywords DEFENSE-RELATED PEPTIDE 1
total genus 7
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2001-07-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00304 Gamma-thionin Gamma-thionin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1jkzA00
4AEIA 1ZUTA 2E0HA 2LKBA 2LR3A 1ZVGA 1ZU3A 2KGQA 2LY6A 1P00A 1SNBA 1MR4A 2GL1A 1SN1A 1ZYVA 2N2RA 1BRZA 1NH5A 5CY0A 1KV0A 4V1DC 1VNAA 1SEGA 2B68A 1ZFUA 1B3CA 2KJAA 4HE7A 1WWNA 1LQHA 1DQ7A 2KYQA 1NRAA 1T7AA 1TI5A 1ZYWA 2N69A 2BRZA 2ATBA 1MYNA 1LQIA 1OMYA 1WMTA 2M8BB 1AHOA 3E7RL 1BK8A 2E3FA 1T0ZA 1JZBA 2LI7A 1GPSA 1C56A 1JKZA 1I6GA 2A7TA 1GPTA 1T7BA 4UJ0A 2SN3A 3PSMA 1AYJA 4AAZA 1ICAA 4CQKA 1JZAA 2E3GA 2KBKA 1L4VA 1N4NA 1VNBA 1CHZA 2LJMA 1CN2A 2ASCA 2YBRC 4AB0A 5KK4A 2MZ0A 1OZZA 2YEOA 1JXCA 1ZVEA 1T7EA 4KYPA 2NY9X 1C55A 2KBJA 1I2UA 1BCGA 1P0AA 4HHFA 1FH3A 1BMRA 1DJTA 1NE5A 1WT7A 1I2VA 2B3CA 1B7DA 2LJ7A 1NRBA 3E7UX 2N2QA 2KPYA 2N66A 2KBHA 1PE4A 2NY8X 2I61A 2KSKA 1T1TA 2LT8A 1I6FA 2LY5A 1PTXA 2YC1C 1NPIA 1PX9A 1LQQA 1SN4A
chains in the Genus database with same CATH superfamily
5AQQA 4AEIA 1ZUTA 2E0HA 2LKBA 2LR3A 1NGFA 5FPMA 1ZVGA 1ZU3A 2KGQA 5AQPA 3L6QA 2LY6A 4UADE 5AQIA 1P00A 1SNBA 1MR4A 2GL1A 5AQJA 1SN1A 3FZHA 1ZYVA 2JDQD 2N2RA 1NH5A 3ATVA 5AQSA 1BRZA 5CY0A 1KV0A 3FE1A 5BPLA 4V1DC 4H5TA 5FPDA 1VNAA 5BN9A 3QFPA 5AQUA 1SEGA 2QWLA 3D2EA 1BUPA 1NGAA 1ZFUA 2B68A 5AQOA 1B3CA 2KJAA 4HE7A 4KBOA 3GDQA 1WWNA 1LQHA 1DQ7A 2QWMA 2BUPA 2KYQA 1DKGD 3FZLA 1NRAA 1T7AA 1TI5A 1ZYWA 2N69A 3KC6A 5AQKA 5EXWA 5BPMA 1UGLA 2K35A 4GNIA 2YIOA 3KP0A 2BRZA 3C7NA 5AQZA 2ATBA 5AQRA 5AQWA 1MYNA 1ATRA 1LQIA 1QQOA 1BA1A 1OMYA 1HJOA 1WMTA 4IO8A 2E88A 2LN8A 1AHOA 2M8BB 1NGCA 3E7RL 4FL9A 1BK8A 2E3FA 1T0ZA 1JZBA 2LI7A 1GPSA 1C56A 1JKZA 1KAXA 5F2RA 1I6GA 2A7TA 2QWQA 3LDLA 1GPTA 3CQXA 1T7BA 3KOWA 5BN8A 2E2FA 1HPMA 4UJ0A 2SN3A 3PSMA 4H5VA 1AYJA 4AAZA 1ICAA 4CQKA 1JZAA 3A8YA 3KOYA 1QQNA 3FZFA 2E3GA 2KBKA 1L4VA 1N4NA 5AQHA 5AR0A 3CW4A 3I33A 1BA0A 1VNBA 1CHZA 5AQMA 2LJMA 1CN2A 2ASCA 3D2FA 2YBRC 5AQLA 3KHWA 4AB0A 1XRSB 4UAEF 5KK4A 5FPNA 1NGJA 1OZZA 2MZ0A 3QFUA 2YEOA 1K8BA 1JXCA 3FZMA 3LDNA 5F1XA 1ZVEA 2E8AA 1T7EA 4KYPA 1NGGA 1POIA 2QWRA 3D2EB 5F0XA 2NY9X 1KAZA 3M3ZA 2YILA 1NGBA 1C55A 5AQNA 3L4IA 1S3XA 2KBJA 3JXUA 2GMOA 4FSVA 1BCGA 1I2UA 2QXLA 3AY9A 1P0AA 4H5NA 4HHFA 1FH3A 3C7NB 1BMRA 3L56A 2MN5A 3ATUA 3FZKA 2MBKA 3KOZA 5AQVA 2QWPA 1DJTA 1NE5A 5AQYA 1QQMA 1WT7A 1I2VA 5BPNA 1YUWA 2B3CA 3QMLA 5EVZA 5EX5A 5AQFA 3GL1A 1B7DA 2G2KA 4UAFE 3GKUA 2LJ7A 2VY6A 3KOXA 1NRBA 3HSCA 3R2VA 5AQTA 1NGHA 3E7UX 3KP1A 3LDOA 4H5RA 4HWIA 5EY4A 5AQGA 2N2QA 2QWOA 5AQXA 2KPYA 2N66A 2KBHA 3KVGA 2QWNA 1PE4A 2NY8X 2I61A 2KHOA 2KSKA 4H5WA 1T1TA 2LT8A 2YIPA 3LDPA 3QI7A 1I6FA 3LDQA 1HX1A 3IUCA 3BK3C 2D56A 3D2FB 2LY5A 2V7ZA 5FPEA 1KAYA 1ATSA 3SF4D 1NGDA 1PTXA 2YC1C 1NGIA 1NGEA 1NPIA 1PX9A 2QW9A 1LQQA 1SN4A
chains in the Genus database with same CATH topology
4AEIA 1ZUTA 2E0HA 2LKBA 2LR3A 1ZVGA 1ZU3A 2KGQA 2LY6A 1P00A 1SNBA 1MR4A 2GL1A 1SN1A 1ZYVA 2N2RA 1BRZA 1NH5A 5CY0A 1KV0A 4V1DC 1VNAA 1SEGA 2B68A 1ZFUA 1B3CA 2KJAA 4HE7A 1WWNA 1LQHA 1DQ7A 2KYQA 1NRAA 1T7AA 1TI5A 1ZYWA 2N69A 2BRZA 2ATBA 1MYNA 1LQIA 1OMYA 1WMTA 2M8BB 1AHOA 3E7RL 1BK8A 2E3FA 1T0ZA 1JZBA 2LI7A 1GPSA 1C56A 1JKZA 1I6GA 2A7TA 1GPTA 1T7BA 4UJ0A 2SN3A 3PSMA 1AYJA 4AAZA 1ICAA 4CQKA 1JZAA 2E3GA 2KBKA 1L4VA 1N4NA 1VNBA 1CHZA 2LJMA 1CN2A 2ASCA 2YBRC 4AB0A 5KK4A 2MZ0A 1OZZA 2YEOA 1JXCA 1ZVEA 1T7EA 4KYPA 2NY9X 1C55A 2KBJA 1I2UA 1BCGA 1P0AA 4HHFA 1FH3A 1BMRA 1DJTA 1NE5A 1WT7A 1I2VA 2B3CA 1B7DA 2LJ7A 1NRBA 3E7UX 2N2QA 2KPYA 2N66A 2KBHA 1PE4A 2NY8X 2I61A 2KSKA 1T1TA 2LT8A 1I6FA 2LY5A 1PTXA 2YC1C 1NPIA 1PX9A 1LQQA 1SN4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AEI A;  1ZUT A;  2E0H A;  2LKB A;  2LR3 A;  1ZVG A;  1ZU3 A;  2KGQ A;  2LY6 A;  1P00 A;  1SNB A;  1MR4 A;  2GL1 A;  1SN1 A;  1ZYV A;  2N2R A;  1BRZ A;  1NH5 A;  5CY0 A;  1KV0 A;  4V1D C;  1VNA A;  1SEG A;  2B68 A;  1ZFU A;  1B3C A;  2KJA A;  4HE7 A;  1WWN A;  1LQH A;  1DQ7 A;  2KYQ A;  1NRA A;  1T7A A;  1TI5 A;  1ZYW A;  2N69 A;  2BRZ A;  2ATB A;  1MYN A;  1LQI A;  1OMY A;  1WMT A;  2M8B B;  1AHO A;  3E7R L;  1BK8 A;  2E3F A;  1T0Z A;  1JZB A;  2LI7 A;  1GPS A;  1C56 A;  1JKZ A;  1I6G A;  2A7T A;  1GPT A;  1T7B A;  4UJ0 A;  2SN3 A;  3PSM A;  1AYJ A;  4AAZ A;  1ICA A;  4CQK A;  1JZA A;  2E3G A;  2KBK A;  1L4V A;  1N4N A;  1VNB A;  1CHZ A;  2LJM A;  1CN2 A;  2ASC A;  2YBR C;  4AB0 A;  5KK4 A;  2MZ0 A;  1OZZ A;  2YEO A;  1JXC A;  1ZVE A;  1T7E A;  4KYP A;  2NY9 X;  1C55 A;  2KBJ A;  1I2U A;  1BCG A;  1P0A A;  4HHF A;  1FH3 A;  1BMR A;  1DJT A;  1NE5 A;  1WT7 A;  1I2V A;  2B3C A;  1B7D A;  2LJ7 A;  1NRB A;  3E7U X;  2N2Q A;  2KPY A;  2N66 A;  2KBH A;  1PE4 A;  2NY8 X;  2I61 A;  2KSK A;  1T1T A;  2LT8 A;  1I6F A;  2LY5 A;  1PTX A;  2YC1 C;  1NPI A;  1PX9 A;  1LQQ A;  1SN4 A; 
#chains in the Genus database with same CATH topology
 5AQQ A;  4AEI A;  1ZUT A;  2E0H A;  2LKB A;  2LR3 A;  1NGF A;  5FPM A;  1ZVG A;  1ZU3 A;  2KGQ A;  5AQP A;  3L6Q A;  2LY6 A;  4UAD E;  5AQI A;  1P00 A;  1SNB A;  1MR4 A;  2GL1 A;  5AQJ A;  1SN1 A;  3FZH A;  1ZYV A;  2JDQ D;  2N2R A;  1NH5 A;  3ATV A;  5AQS A;  1BRZ A;  5CY0 A;  1KV0 A;  3FE1 A;  5BPL A;  4V1D C;  4H5T A;  5FPD A;  1VNA A;  5BN9 A;  3QFP A;  5AQU A;  1SEG A;  2QWL A;  3D2E A;  1BUP A;  1NGA A;  1ZFU A;  2B68 A;  5AQO A;  1B3C A;  2KJA A;  4HE7 A;  4KBO A;  3GDQ A;  1WWN A;  1LQH A;  1DQ7 A;  2QWM A;  2BUP A;  2KYQ A;  1DKG D;  3FZL A;  1NRA A;  1T7A A;  1TI5 A;  1ZYW A;  2N69 A;  3KC6 A;  5AQK A;  5EXW A;  5BPM A;  1UGL A;  2K35 A;  4GNI A;  2YIO A;  3KP0 A;  2BRZ A;  3C7N A;  5AQZ A;  2ATB A;  5AQR A;  5AQW A;  1MYN A;  1ATR A;  1LQI A;  1QQO A;  1BA1 A;  1OMY A;  1HJO A;  1WMT A;  4IO8 A;  2E88 A;  2LN8 A;  1AHO A;  2M8B B;  1NGC A;  3E7R L;  4FL9 A;  1BK8 A;  2E3F A;  1T0Z A;  1JZB A;  2LI7 A;  1GPS A;  1C56 A;  1JKZ A;  1KAX A;  5F2R A;  1I6G A;  2A7T A;  2QWQ A;  3LDL A;  1GPT A;  3CQX A;  1T7B A;  3KOW A;  5BN8 A;  2E2F A;  1HPM A;  4UJ0 A;  2SN3 A;  3PSM A;  4H5V A;  1AYJ A;  4AAZ A;  1ICA A;  4CQK A;  1JZA A;  3A8Y A;  3KOY A;  1QQN A;  3FZF A;  2E3G A;  2KBK A;  1L4V A;  1N4N A;  5AQH A;  5AR0 A;  3CW4 A;  3I33 A;  1BA0 A;  1VNB A;  1CHZ A;  5AQM A;  2LJM A;  1CN2 A;  2ASC A;  3D2F A;  2YBR C;  5AQL A;  3KHW A;  4AB0 A;  1XRS B;  4UAE F;  5KK4 A;  5FPN A;  1NGJ A;  1OZZ A;  2MZ0 A;  3QFU A;  2YEO A;  1K8B A;  1JXC A;  3FZM A;  3LDN A;  5F1X A;  1ZVE A;  2E8A A;  1T7E A;  4KYP A;  1NGG A;  1POI A;  2QWR A;  3D2E B;  5F0X A;  2NY9 X;  1KAZ A;  3M3Z A;  2YIL A;  1NGB A;  1C55 A;  5AQN A;  3L4I A;  1S3X A;  2KBJ A;  3JXU A;  2GMO A;  4FSV A;  1BCG A;  1I2U A;  2QXL A;  3AY9 A;  1P0A A;  4H5N A;  4HHF A;  1FH3 A;  3C7N B;  1BMR A;  3L56 A;  2MN5 A;  3ATU A;  3FZK A;  2MBK A;  3KOZ A;  5AQV A;  2QWP A;  1DJT A;  1NE5 A;  5AQY A;  1QQM A;  1WT7 A;  1I2V A;  5BPN A;  1YUW A;  2B3C A;  3QML A;  5EVZ A;  5EX5 A;  5AQF A;  3GL1 A;  1B7D A;  2G2K A;  4UAF E;  3GKU A;  2LJ7 A;  2VY6 A;  3KOX A;  1NRB A;  3HSC A;  3R2V A;  5AQT A;  1NGH A;  3E7U X;  3KP1 A;  3LDO A;  4H5R A;  4HWI A;  5EY4 A;  5AQG A;  2N2Q A;  2QWO A;  5AQX A;  2KPY A;  2N66 A;  2KBH A;  3KVG A;  2QWN A;  1PE4 A;  2NY8 X;  2I61 A;  2KHO A;  2KSK A;  4H5W A;  1T1T A;  2LT8 A;  2YIP A;  3LDP A;  3QI7 A;  1I6F A;  3LDQ A;  1HX1 A;  3IUC A;  3BK3 C;  2D56 A;  3D2F B;  2LY5 A;  2V7Z A;  5FPE A;  1KAY A;  1ATS A;  3SF4 D;  1NGD A;  1PTX A;  2YC1 C;  1NGI A;  1NGE A;  1NPI A;  1PX9 A;  2QW9 A;  1LQQ A;  1SN4 A; 
#chains in the Genus database with same CATH homology
 4AEI A;  1ZUT A;  2E0H A;  2LKB A;  2LR3 A;  1ZVG A;  1ZU3 A;  2KGQ A;  2LY6 A;  1P00 A;  1SNB A;  1MR4 A;  2GL1 A;  1SN1 A;  1ZYV A;  2N2R A;  1BRZ A;  1NH5 A;  5CY0 A;  1KV0 A;  4V1D C;  1VNA A;  1SEG A;  2B68 A;  1ZFU A;  1B3C A;  2KJA A;  4HE7 A;  1WWN A;  1LQH A;  1DQ7 A;  2KYQ A;  1NRA A;  1T7A A;  1TI5 A;  1ZYW A;  2N69 A;  2BRZ A;  2ATB A;  1MYN A;  1LQI A;  1OMY A;  1WMT A;  2M8B B;  1AHO A;  3E7R L;  1BK8 A;  2E3F A;  1T0Z A;  1JZB A;  2LI7 A;  1GPS A;  1C56 A;  1JKZ A;  1I6G A;  2A7T A;  1GPT A;  1T7B A;  4UJ0 A;  2SN3 A;  3PSM A;  1AYJ A;  4AAZ A;  1ICA A;  4CQK A;  1JZA A;  2E3G A;  2KBK A;  1L4V A;  1N4N A;  1VNB A;  1CHZ A;  2LJM A;  1CN2 A;  2ASC A;  2YBR C;  4AB0 A;  5KK4 A;  2MZ0 A;  1OZZ A;  2YEO A;  1JXC A;  1ZVE A;  1T7E A;  4KYP A;  2NY9 X;  1C55 A;  2KBJ A;  1I2U A;  1BCG A;  1P0A A;  4HHF A;  1FH3 A;  1BMR A;  1DJT A;  1NE5 A;  1WT7 A;  1I2V A;  2B3C A;  1B7D A;  2LJ7 A;  1NRB A;  3E7U X;  2N2Q A;  2KPY A;  2N66 A;  2KBH A;  1PE4 A;  2NY8 X;  2I61 A;  2KSK A;  1T1T A;  2LT8 A;  1I6F A;  2LY5 A;  1PTX A;  2YC1 C;  1NPI A;  1PX9 A;  1LQQ A;  1SN4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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