1JZAA

Crystal structure of variant 2 scorpion toxin from centruroides sculpturatus ewing
Total Genus 16

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
66
structure length
66
Chain Sequence
KEGYLVNKSTGCKYGCLKLGENEGCDKECKAKNQGGSYGYCYAFACWCEGLPESTPTYPLPNKSCS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV4 (48-51)S1 (3-4)S4 (45-49)S3 (38-42)TIV5 (57-60)TI1 (7-10)TI2 (8-11)TIV6 (60-63)O1 (12-65)TIV1 (19-22)S2 (20-21)AH1 (23-30)TI3 (31-34)TIV2 (32-35)TI4 (52-55)Updating...
connected with : NaN
molecule tags Toxin
publication title Structure of variant 2 scorpion toxin from Centruroides sculpturatus Ewing.
pubmed doi rcsb
molecule keywords NEUROTOXIN 2
total genus 16
structure length 66
sequence length 66
chains with identical sequence B
ec nomenclature
pdb deposition date 2001-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00537 Toxin_3 Scorpion toxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1jzaA00
2SN3A 1DJTA 4UJ0A 1OZZA 2E0HA 5CY0A 3E7RL 1MYNA 1VNAA 1B7DA 1NPIA 1ZFUA 2KJAA 1CN2A 1C55A 2KGQA 1TI5A 2KPYA 2NY9X 1ICAA 2N69A 4KYPA 2I61A 2KYQA 1I6GA 4AB0A 2KSKA 1C56A 2KBKA 1BMRA 1BK8A 1I2UA 1GPTA 1MR4A 2KBHA 3PSMA 1PTXA 2N2RA 4HE7A 1LQHA 2LJMA 1T7EA 2A7TA 1T0ZA 2ATBA 2YC1C 2KBJA 1SN1A 1NRBA 2LY5A 2M8BB 1NRAA 2B68A 4V1DC 1AYJA 1WT7A 1SEGA 2E3FA 1BRZA 1ZVGA 1B3CA 1JZBA 1WWNA 2N66A 1T7AA 2N2QA 1LQIA 1NH5A 1P0AA 2LKBA 1GPSA 1FH3A 2YEOA 4AAZA 2B3CA 2LR3A 1PE4A 1ZVEA 1JZAA 1DQ7A 1I6FA 1P00A 1T7BA 2GL1A 1KV0A 1ZYWA 1ZU3A 1VNBA 2LI7A 1PX9A 4AEIA 1L4VA 1T1TA 2LJ7A 1N4NA 2ASCA 1JKZA 2BRZA 1ZYVA 2NY8X 1BCGA 1OMYA 2E3GA 1NE5A 2YBRC 1LQQA 1SNBA 4HHFA 2MZ0A 1JXCA 1AHOA 5KK4A 1CHZA 1SN4A 1ZUTA 1I2VA 1WMTA 3E7UX 4CQKA 2LT8A 2LY6A
chains in the Genus database with same CATH superfamily
2SN3A 1DJTA 4UJ0A 1OZZA 2E0HA 1HPMA 2QWMA 1DKGD 3JXUA 5AQQA 3KP0A 5AR0A 5EXWA 5CY0A 5EX5A 3AY9A 3CW4A 3E7RL 1MYNA 1VNAA 3C7NB 1B7DA 1NPIA 5F2RA 1ZFUA 2KJAA 5AQXA 1CN2A 1C55A 4FSVA 2KGQA 4H5RA 1QQMA 5EY4A 2YILA 1TI5A 2YIOA 3KOZA 2KPYA 1NGGA 2NY9X 3SF4D 1ICAA 2N69A 4KYPA 2LN8A 2I61A 2KYQA 3D2EA 5AQPA 5AQOA 2MBKA 3D2FB 1I6GA 4AB0A 5BPMA 2KSKA 2QWPA 5BN9A 5AQYA 3ATUA 2QXLA 1C56A 2KBKA 5AQJA 2K35A 1BK8A 1BMRA 3R2VA 4H5WA 5EVZA 5AQWA 5FPMA 1I2UA 1GPTA 4IO8A 5AQSA 4H5VA 1MR4A 1KAXA 2E88A 2BUPA 2KBHA 3PSMA 1PTXA 3LDOA 3KOYA 1NGCA 1KAZA 2N2RA 4HE7A 5AQKA 1LQHA 3LDQA 2LJMA 1T7EA 3LDPA 2A7TA 2JDQD 4FL9A 1T0ZA 1YUWA 5AQUA 2MN5A 2G2KA 2ATBA 3C7NA 5BPLA 2YC1C 2GMOA 4GNIA 2KBJA 1SN1A 3KP1A 3QMLA 3KVGA 1NRBA 3GL1A 2LY5A 5AQVA 2M8BB 1NRAA 1NGFA 2B68A 5AQFA 4V1DC 1AYJA 1NGAA 1NGJA 1WT7A 1SEGA 2E3FA 1BRZA 1BUPA 3L56A 1ZVGA 1B3CA 5FPDA 1NGEA 1JZBA 1WWNA 2D56A 2N66A 2E8AA 5F0XA 3QI7A 1BA1A 1T7AA 5BPNA 1ATSA 2N2QA 3QFPA 5BN8A 1LQIA 1NGIA 1NH5A 1P0AA 2LKBA 3LDNA 2VY6A 5AQGA 3FZMA 3D2EB 1GPSA 1FH3A 2YEOA 4UAEF 2QWRA 3LDLA 5FPNA 2QW9A 4UADE 1NGHA 4UAFE 4AAZA 2B3CA 2LR3A 1PE4A 5FPEA 1K8BA 3FZKA 1ZVEA 2E2FA 1JZAA 1I6FA 1DQ7A 1P00A 1T7BA 2GL1A 4H5TA 5AQTA 1HX1A 1NGDA 3A8YA 1KV0A 3L6QA 1ZYWA 5AQIA 5AQLA 1ZU3A 5F1XA 3KOWA 1VNBA 3D2FA 3GDQA 1PX9A 2LI7A 1QQOA 4AEIA 1L4VA 1T1TA 2LJ7A 3FZFA 1UGLA 1N4NA 2ASCA 3ATVA 3QFUA 1JKZA 5AQMA 4H5NA 2BRZA 5AQNA 1ZYVA 2NY8X 1S3XA 1BCGA 1OMYA 2E3GA 3KHWA 1NE5A 3BK3C 3KC6A 3FE1A 2QWLA 3KOXA 1ATRA 1XRSB 1LQQA 1SNBA 2YBRC 4HHFA 2QWQA 1HJOA 5AQHA 2MZ0A 1POIA 5AQZA 3IUCA 1JXCA 5AQRA 1AHOA 5KK4A 3I33A 1CHZA 2QWOA 3CQXA 1NGBA 3HSCA 1SN4A 1ZUTA 1I2VA 2KHOA 4KBOA 1BA0A 1WMTA 3M3ZA 3E7UX 4CQKA 2LT8A 2QWNA 4HWIA 1QQNA 3GKUA 1KAYA 2YIPA 3FZHA 2V7ZA 3FZLA 3L4IA 2LY6A
chains in the Genus database with same CATH topology
2SN3A 1DJTA 4UJ0A 1OZZA 2E0HA 5CY0A 3E7RL 1MYNA 1VNAA 1B7DA 1NPIA 1ZFUA 2KJAA 1CN2A 1C55A 2KGQA 1TI5A 2KPYA 2NY9X 1ICAA 2N69A 4KYPA 2I61A 2KYQA 1I6GA 4AB0A 2KSKA 1C56A 2KBKA 1BMRA 1BK8A 1I2UA 1GPTA 1MR4A 2KBHA 3PSMA 1PTXA 2N2RA 4HE7A 1LQHA 2LJMA 1T7EA 2A7TA 1T0ZA 2ATBA 2YC1C 2KBJA 1SN1A 1NRBA 2LY5A 2M8BB 1NRAA 2B68A 4V1DC 1AYJA 1WT7A 1SEGA 2E3FA 1BRZA 1ZVGA 1B3CA 1JZBA 1WWNA 2N66A 1T7AA 2N2QA 1LQIA 1NH5A 1P0AA 2LKBA 1GPSA 1FH3A 2YEOA 4AAZA 2B3CA 2LR3A 1PE4A 1ZVEA 1JZAA 1DQ7A 1I6FA 1P00A 1T7BA 2GL1A 1KV0A 1ZYWA 1ZU3A 1VNBA 2LI7A 1PX9A 4AEIA 1L4VA 1T1TA 2LJ7A 1N4NA 2ASCA 1JKZA 2BRZA 1ZYVA 2NY8X 1BCGA 1OMYA 2E3GA 1NE5A 2YBRC 1LQQA 1SNBA 4HHFA 2MZ0A 1JXCA 1AHOA 5KK4A 1CHZA 1SN4A 1ZUTA 1I2VA 1WMTA 3E7UX 4CQKA 2LT8A 2LY6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2SN3 A;  1DJT A;  4UJ0 A;  1OZZ A;  2E0H A;  5CY0 A;  3E7R L;  1MYN A;  1VNA A;  1B7D A;  1NPI A;  1ZFU A;  2KJA A;  1CN2 A;  1C55 A;  2KGQ A;  1TI5 A;  2KPY A;  2NY9 X;  1ICA A;  2N69 A;  4KYP A;  2I61 A;  2KYQ A;  1I6G A;  4AB0 A;  2KSK A;  1C56 A;  2KBK A;  1BMR A;  1BK8 A;  1I2U A;  1GPT A;  1MR4 A;  2KBH A;  3PSM A;  1PTX A;  2N2R A;  4HE7 A;  1LQH A;  2LJM A;  1T7E A;  2A7T A;  1T0Z A;  2ATB A;  2YC1 C;  2KBJ A;  1SN1 A;  1NRB A;  2LY5 A;  2M8B B;  1NRA A;  2B68 A;  4V1D C;  1AYJ A;  1WT7 A;  1SEG A;  2E3F A;  1BRZ A;  1ZVG A;  1B3C A;  1JZB A;  1WWN A;  2N66 A;  1T7A A;  2N2Q A;  1LQI A;  1NH5 A;  1P0A A;  2LKB A;  1GPS A;  1FH3 A;  2YEO A;  4AAZ A;  2B3C A;  2LR3 A;  1PE4 A;  1ZVE A;  1JZA A;  1DQ7 A;  1I6F A;  1P00 A;  1T7B A;  2GL1 A;  1KV0 A;  1ZYW A;  1ZU3 A;  1VNB A;  2LI7 A;  1PX9 A;  4AEI A;  1L4V A;  1T1T A;  2LJ7 A;  1N4N A;  2ASC A;  1JKZ A;  2BRZ A;  1ZYV A;  2NY8 X;  1BCG A;  1OMY A;  2E3G A;  1NE5 A;  2YBR C;  1LQQ A;  1SNB A;  4HHF A;  2MZ0 A;  1JXC A;  1AHO A;  5KK4 A;  1CHZ A;  1SN4 A;  1ZUT A;  1I2V A;  1WMT A;  3E7U X;  4CQK A;  2LT8 A;  2LY6 A; 
#chains in the Genus database with same CATH topology
 2SN3 A;  1DJT A;  4UJ0 A;  1OZZ A;  2E0H A;  1HPM A;  2QWM A;  1DKG D;  3JXU A;  5AQQ A;  3KP0 A;  5AR0 A;  5EXW A;  5CY0 A;  5EX5 A;  3AY9 A;  3CW4 A;  3E7R L;  1MYN A;  1VNA A;  3C7N B;  1B7D A;  1NPI A;  5F2R A;  1ZFU A;  2KJA A;  5AQX A;  1CN2 A;  1C55 A;  4FSV A;  2KGQ A;  4H5R A;  1QQM A;  5EY4 A;  2YIL A;  1TI5 A;  2YIO A;  3KOZ A;  2KPY A;  1NGG A;  2NY9 X;  3SF4 D;  1ICA A;  2N69 A;  4KYP A;  2LN8 A;  2I61 A;  2KYQ A;  3D2E A;  5AQP A;  5AQO A;  2MBK A;  3D2F B;  1I6G A;  4AB0 A;  5BPM A;  2KSK A;  2QWP A;  5BN9 A;  5AQY A;  3ATU A;  2QXL A;  1C56 A;  2KBK A;  5AQJ A;  2K35 A;  1BK8 A;  1BMR A;  3R2V A;  4H5W A;  5EVZ A;  5AQW A;  5FPM A;  1I2U A;  1GPT A;  4IO8 A;  5AQS A;  4H5V A;  1MR4 A;  1KAX A;  2E88 A;  2BUP A;  2KBH A;  3PSM A;  1PTX A;  3LDO A;  3KOY A;  1NGC A;  1KAZ A;  2N2R A;  4HE7 A;  5AQK A;  1LQH A;  3LDQ A;  2LJM A;  1T7E A;  3LDP A;  2A7T A;  2JDQ D;  4FL9 A;  1T0Z A;  1YUW A;  5AQU A;  2MN5 A;  2G2K A;  2ATB A;  3C7N A;  5BPL A;  2YC1 C;  2GMO A;  4GNI A;  2KBJ A;  1SN1 A;  3KP1 A;  3QML A;  3KVG A;  1NRB A;  3GL1 A;  2LY5 A;  5AQV A;  2M8B B;  1NRA A;  1NGF A;  2B68 A;  5AQF A;  4V1D C;  1AYJ A;  1NGA A;  1NGJ A;  1WT7 A;  1SEG A;  2E3F A;  1BRZ A;  1BUP A;  3L56 A;  1ZVG A;  1B3C A;  5FPD A;  1NGE A;  1JZB A;  1WWN A;  2D56 A;  2N66 A;  2E8A A;  5F0X A;  3QI7 A;  1BA1 A;  1T7A A;  5BPN A;  1ATS A;  2N2Q A;  3QFP A;  5BN8 A;  1LQI A;  1NGI A;  1NH5 A;  1P0A A;  2LKB A;  3LDN A;  2VY6 A;  5AQG A;  3FZM A;  3D2E B;  1GPS A;  1FH3 A;  2YEO A;  4UAE F;  2QWR A;  3LDL A;  5FPN A;  2QW9 A;  4UAD E;  1NGH A;  4UAF E;  4AAZ A;  2B3C A;  2LR3 A;  1PE4 A;  5FPE A;  1K8B A;  3FZK A;  1ZVE A;  2E2F A;  1JZA A;  1I6F A;  1DQ7 A;  1P00 A;  1T7B A;  2GL1 A;  4H5T A;  5AQT A;  1HX1 A;  1NGD A;  3A8Y A;  1KV0 A;  3L6Q A;  1ZYW A;  5AQI A;  5AQL A;  1ZU3 A;  5F1X A;  3KOW A;  1VNB A;  3D2F A;  3GDQ A;  1PX9 A;  2LI7 A;  1QQO A;  4AEI A;  1L4V A;  1T1T A;  2LJ7 A;  3FZF A;  1UGL A;  1N4N A;  2ASC A;  3ATV A;  3QFU A;  1JKZ A;  5AQM A;  4H5N A;  2BRZ A;  5AQN A;  1ZYV A;  2NY8 X;  1S3X A;  1BCG A;  1OMY A;  2E3G A;  3KHW A;  1NE5 A;  3BK3 C;  3KC6 A;  3FE1 A;  2QWL A;  3KOX A;  1ATR A;  1XRS B;  1LQQ A;  1SNB A;  2YBR C;  4HHF A;  2QWQ A;  1HJO A;  5AQH A;  2MZ0 A;  1POI A;  5AQZ A;  3IUC A;  1JXC A;  5AQR A;  1AHO A;  5KK4 A;  3I33 A;  1CHZ A;  2QWO A;  3CQX A;  1NGB A;  3HSC A;  1SN4 A;  1ZUT A;  1I2V A;  2KHO A;  4KBO A;  1BA0 A;  1WMT A;  3M3Z A;  3E7U X;  4CQK A;  2LT8 A;  2QWN A;  4HWI A;  1QQN A;  3GKU A;  1KAY A;  2YIP A;  3FZH A;  2V7Z A;  3FZL A;  3L4I A;  2LY6 A; 
#chains in the Genus database with same CATH homology
 2SN3 A;  1DJT A;  4UJ0 A;  1OZZ A;  2E0H A;  5CY0 A;  3E7R L;  1MYN A;  1VNA A;  1B7D A;  1NPI A;  1ZFU A;  2KJA A;  1CN2 A;  1C55 A;  2KGQ A;  1TI5 A;  2KPY A;  2NY9 X;  1ICA A;  2N69 A;  4KYP A;  2I61 A;  2KYQ A;  1I6G A;  4AB0 A;  2KSK A;  1C56 A;  2KBK A;  1BMR A;  1BK8 A;  1I2U A;  1GPT A;  1MR4 A;  2KBH A;  3PSM A;  1PTX A;  2N2R A;  4HE7 A;  1LQH A;  2LJM A;  1T7E A;  2A7T A;  1T0Z A;  2ATB A;  2YC1 C;  2KBJ A;  1SN1 A;  1NRB A;  2LY5 A;  2M8B B;  1NRA A;  2B68 A;  4V1D C;  1AYJ A;  1WT7 A;  1SEG A;  2E3F A;  1BRZ A;  1ZVG A;  1B3C A;  1JZB A;  1WWN A;  2N66 A;  1T7A A;  2N2Q A;  1LQI A;  1NH5 A;  1P0A A;  2LKB A;  1GPS A;  1FH3 A;  2YEO A;  4AAZ A;  2B3C A;  2LR3 A;  1PE4 A;  1ZVE A;  1JZA A;  1DQ7 A;  1I6F A;  1P00 A;  1T7B A;  2GL1 A;  1KV0 A;  1ZYW A;  1ZU3 A;  1VNB A;  2LI7 A;  1PX9 A;  4AEI A;  1L4V A;  1T1T A;  2LJ7 A;  1N4N A;  2ASC A;  1JKZ A;  2BRZ A;  1ZYV A;  2NY8 X;  1BCG A;  1OMY A;  2E3G A;  1NE5 A;  2YBR C;  1LQQ A;  1SNB A;  4HHF A;  2MZ0 A;  1JXC A;  1AHO A;  5KK4 A;  1CHZ A;  1SN4 A;  1ZUT A;  1I2V A;  1WMT A;  3E7U X;  4CQK A;  2LT8 A;  2LY6 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.