1K8BA

Nmr structure analysis of the n-terminal domain of archaeal translation initiation factor 2 subunit beta
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
52
structure length
52
Chain Sequence
EILIEGNRTIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLEGGRLILQRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of the beta subunit of translation initiation factor 2 from the archaeon Methanococcus jannaschii: a representative of the eIF2beta/eIF5 family of proteins.
pubmed doi rcsb
molecule tags Translation
source organism Methanocaldococcus jannaschii
molecule keywords PROBABLE TRANSLATION INITIATION FACTOR 2 BETA SUBUNIT
total genus 9
structure length 52
sequence length 52
ec nomenclature
pdb deposition date 2001-10-23
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.50 Alpha Beta 2-Layer Sandwich Defensin A-like Translation initiation factor 2 beta, aIF2beta, N-terminal domain 1k8bA00
2G2KA 1K8BA
chains in the Genus database with same CATH superfamily
3D2FA 1LQQA 3QMLA 2QW9A 5AQWA 1LQHA 2MN5A 2N69A 2YIOA 1CHZA 1N4NA 5AQZA 1JXCA 2LT8A 5AQLA 5AQIA 5AQUA 3KOYA 1B3CA 4AAZA 1WMTA 1NGAA 3QFPA 1NGJA 5AQVA 2KJAA 1DJTA 1NGDA 5AR0A 1KAXA 2QWLA 3E7RL 4AB0A 1B7DA 4UJ0A 1NGFA 3BK3C 4FL9A 2I61A 2QXLA 3FZLA 3LDOA 5AQFA 2GL1A 3HSCA 5AQNA 2LY5A 3KHWA 4UADE 1KAYA 2E3GA 3FZHA 3L6QA 1VNAA 5FPNA 1KAZA 2E0HA 2KSKA 3A8YA 1C56A 2BRZA 1ATSA 2BUPA 3SF4D 1P00A 1T0ZA 1ZUTA 5BPMA 1ZU3A 1ZVEA 2LY6A 3AY9A 1T7EA 2N2QA 3KOWA 1QQOA 2LJ7A 3L56A 1GPTA 3LDLA 1KV0A 1OZZA 4H5NA 1OMYA 4UAEF 1NGCA 2D56A 2LR3A 3C7NB 3FZKA 3QI7A 5BPLA 1NGGA 1ZFUA 1NE5A 2G2KA 1SN1A 4H5VA 2YEOA 1S3XA 4HHFA 4IO8A 5AQRA 1I6GA 1DKGD 5AQKA 3GKUA 5AQQA 3LDNA 2KBHA 2QWPA 3KOXA 1AHOA 2GMOA 2YBRC 3KP0A 5CY0A 4UAFE 2B68A 5F1XA 1ICAA 1PE4A 4HE7A 3FZMA 2NY8X 1BMRA 3C7NA 5BN8A 1SN4A 1HPMA 1I6FA 2KYQA 1BRZA 5AQHA 1JKZA 1I2UA 3ATVA 3FZFA 3QFUA 1K8BA 5EY4A 2LJMA 2YIPA 2QWMA 1BCGA 5EVZA 1HX1A 2LN8A 3E7UX 2KGQA 5FPDA 3ATUA 5BN9A 3KC6A 3LDQA 1NRAA 1I2VA 4H5TA 1SNBA 1JZBA 2E8AA 1T7AA 1TI5A 2A7TA 1NRBA 1PX9A 1T1TA 1ZYVA 2VY6A 4FSVA 1BUPA 4H5RA 1C55A 1VNBA 4H5WA 1YUWA 1QQNA 1ZYWA 2KHOA 3GL1A 1ATRA 1NGEA 2MZ0A 2QWOA 1MYNA 2KPYA 2LI7A 1QQMA 5AQPA 2V7ZA 1NPIA 2B3CA 3D2EB 4HWIA 3IUCA 2M8BB 1ZVGA 3GDQA 3KOZA 1NGBA 5AQSA 1GPSA 5FPMA 2E2FA 2E3FA 3CQXA 4AEIA 1T7BA 1CN2A 5AQYA 5FPEA 2E88A 2N66A 2YILA 2YC1C 5F2RA 2QWRA 1BK8A 2ATBA 1UGLA 5AQOA 3KP1A 5AQGA 5AQXA 2JDQD 2QWQA 3D2EA 3JXUA 5EX5A 4KYPA 1NGHA 1FH3A 1BA0A 2KBJA 4V1DC 4KBOA 1HJOA 1DQ7A 3I33A 1NGIA 1POIA 1JZAA 2QWNA 3CW4A 3PSMA 3L4IA 5BPNA 2SN3A 5AQTA 3D2FB 1SEGA 2MBKA 2LKBA 2N2RA 2ASCA 3FE1A 1MR4A 5AQMA 2KBKA 2NY9X 4GNIA 1BA1A 3LDPA 3KVGA 1WWNA 1L4VA 1XRSB 3M3ZA 2K35A 5KK4A 4CQKA 1AYJA 1NH5A 1P0AA 5EXWA 1PTXA 5F0XA 1LQIA 5AQJA 1WT7A 3R2VA
chains in the Genus database with same CATH topology
2G2KA 1K8BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2G2K A;  1K8B A; 
#chains in the Genus database with same CATH topology
 3D2F A;  1LQQ A;  3QML A;  2QW9 A;  5AQW A;  1LQH A;  2MN5 A;  2N69 A;  2YIO A;  1CHZ A;  1N4N A;  5AQZ A;  1JXC A;  2LT8 A;  5AQL A;  5AQI A;  5AQU A;  3KOY A;  1B3C A;  4AAZ A;  1WMT A;  1NGA A;  3QFP A;  1NGJ A;  5AQV A;  2KJA A;  1DJT A;  1NGD A;  5AR0 A;  1KAX A;  2QWL A;  3E7R L;  4AB0 A;  1B7D A;  4UJ0 A;  1NGF A;  3BK3 C;  4FL9 A;  2I61 A;  2QXL A;  3FZL A;  3LDO A;  5AQF A;  2GL1 A;  3HSC A;  5AQN A;  2LY5 A;  3KHW A;  4UAD E;  1KAY A;  2E3G A;  3FZH A;  3L6Q A;  1VNA A;  5FPN A;  1KAZ A;  2E0H A;  2KSK A;  3A8Y A;  1C56 A;  2BRZ A;  1ATS A;  2BUP A;  3SF4 D;  1P00 A;  1T0Z A;  1ZUT A;  5BPM A;  1ZU3 A;  1ZVE A;  2LY6 A;  3AY9 A;  1T7E A;  2N2Q A;  3KOW A;  1QQO A;  2LJ7 A;  3L56 A;  1GPT A;  3LDL A;  1KV0 A;  1OZZ A;  4H5N A;  1OMY A;  4UAE F;  1NGC A;  2D56 A;  2LR3 A;  3C7N B;  3FZK A;  3QI7 A;  5BPL A;  1NGG A;  1ZFU A;  1NE5 A;  2G2K A;  1SN1 A;  4H5V A;  2YEO A;  1S3X A;  4HHF A;  4IO8 A;  5AQR A;  1I6G A;  1DKG D;  5AQK A;  3GKU A;  5AQQ A;  3LDN A;  2KBH A;  2QWP A;  3KOX A;  1AHO A;  2GMO A;  2YBR C;  3KP0 A;  5CY0 A;  4UAF E;  2B68 A;  5F1X A;  1ICA A;  1PE4 A;  4HE7 A;  3FZM A;  2NY8 X;  1BMR A;  3C7N A;  5BN8 A;  1SN4 A;  1HPM A;  1I6F A;  2KYQ A;  1BRZ A;  5AQH A;  1JKZ A;  1I2U A;  3ATV A;  3FZF A;  3QFU A;  1K8B A;  5EY4 A;  2LJM A;  2YIP A;  2QWM A;  1BCG A;  5EVZ A;  1HX1 A;  2LN8 A;  3E7U X;  2KGQ A;  5FPD A;  3ATU A;  5BN9 A;  3KC6 A;  3LDQ A;  1NRA A;  1I2V A;  4H5T A;  1SNB A;  1JZB A;  2E8A A;  1T7A A;  1TI5 A;  2A7T A;  1NRB A;  1PX9 A;  1T1T A;  1ZYV A;  2VY6 A;  4FSV A;  1BUP A;  4H5R A;  1C55 A;  1VNB A;  4H5W A;  1YUW A;  1QQN A;  1ZYW A;  2KHO A;  3GL1 A;  1ATR A;  1NGE A;  2MZ0 A;  2QWO A;  1MYN A;  2KPY A;  2LI7 A;  1QQM A;  5AQP A;  2V7Z A;  1NPI A;  2B3C A;  3D2E B;  4HWI A;  3IUC A;  2M8B B;  1ZVG A;  3GDQ A;  3KOZ A;  1NGB A;  5AQS A;  1GPS A;  5FPM A;  2E2F A;  2E3F A;  3CQX A;  4AEI A;  1T7B A;  1CN2 A;  5AQY A;  5FPE A;  2E88 A;  2N66 A;  2YIL A;  2YC1 C;  5F2R A;  2QWR A;  1BK8 A;  2ATB A;  1UGL A;  5AQO A;  3KP1 A;  5AQG A;  5AQX A;  2JDQ D;  2QWQ A;  3D2E A;  3JXU A;  5EX5 A;  4KYP A;  1NGH A;  1FH3 A;  1BA0 A;  2KBJ A;  4V1D C;  4KBO A;  1HJO A;  1DQ7 A;  3I33 A;  1NGI A;  1POI A;  1JZA A;  2QWN A;  3CW4 A;  3PSM A;  3L4I A;  5BPN A;  2SN3 A;  5AQT A;  3D2F B;  1SEG A;  2MBK A;  2LKB A;  2N2R A;  2ASC A;  3FE1 A;  1MR4 A;  5AQM A;  2KBK A;  2NY9 X;  4GNI A;  1BA1 A;  3LDP A;  3KVG A;  1WWN A;  1L4V A;  1XRS B;  3M3Z A;  2K35 A;  5KK4 A;  4CQK A;  1AYJ A;  1NH5 A;  1P0A A;  5EXW A;  1PTX A;  5F0X A;  1LQI A;  5AQJ A;  1WT7 A;  3R2V A; 
#chains in the Genus database with same CATH homology
 2G2K A;  1K8B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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