1NE5A

Solution structure of herg specific scorpion toxin cnerg1
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
42
structure length
42
Chain Sequence
DRDSCVDKSRCAKYGYYQECQDCCKNAGHNGGTCMFFKCKCA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of CnErg1 (Ergtoxin), a HERG specific scorpion toxin
pubmed doi rcsb
molecule tags Toxin
molecule keywords ergtoxin
total genus 7
structure length 42
sequence length 42
ec nomenclature
pdb deposition date 2002-12-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08086 Toxin_17 Ergtoxin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1ne5A00
1PTXA 1PX9A 2BRZA 2KJAA 4AB0A 4V1DC 2LY5A 1I6GA 1WWNA 1JXCA 1KV0A 2LY6A 1OMYA 1BRZA 2LJ7A 4CQKA 1I6FA 1TI5A 2NY8X 2A7TA 2KBJA 1PE4A 2KYQA 1ZYVA 1I2VA 1ICAA 1MR4A 2GL1A 2ATBA 2E3GA 1L4VA 1CHZA 1C55A 2KBHA 1SEGA 1LQQA 4KYPA 1SN1A 2YBRC 5CY0A 2KGQA 1ZFUA 1NRAA 2KPYA 2YEOA 1NPIA 2M8BB 1VNBA 1JZBA 1NRBA 1GPTA 1T1TA 2YC1C 1JZAA 1AYJA 1FH3A 1DJTA 4AAZA 4AEIA 1JKZA 1WMTA 1BCGA 1SNBA 1B3CA 2LJMA 2SN3A 1CN2A 1T7EA 1BMRA 1T7BA 1MYNA 2N2RA 1I2UA 1N4NA 2LI7A 1P00A 1BK8A 1LQIA 1P0AA 2N69A 2ASCA 4UJ0A 1ZUTA 2B68A 3E7RL 2LT8A 1SN4A 1DQ7A 1NE5A 1ZVGA 1GPSA 1ZU3A 2KBKA 1NH5A 2E3FA 4HHFA 1OZZA 1T0ZA 5KK4A 4HE7A 2MZ0A 1ZYWA 1T7AA 1ZVEA 1VNAA 2I61A 2B3CA 1C56A 2LKBA 3E7UX 2E0HA 1WT7A 2N2QA 1B7DA 2NY9X 2KSKA 2N66A 1LQHA 2LR3A 3PSMA 1AHOA
chains in the Genus database with same CATH superfamily
1PTXA 3D2FB 5FPDA 1PX9A 3LDQA 1DKGD 3KOYA 5BN9A 2BRZA 3ATUA 5BPMA 5AQLA 5BPLA 3FZMA 3HSCA 5BN8A 2KJAA 4AB0A 1HX1A 1POIA 3CW4A 3CQXA 4V1DC 3BK3C 2LY5A 1I6GA 3FZLA 1WWNA 5AQFA 1JXCA 2QXLA 3LDNA 5AQRA 1KV0A 2LY6A 5EXWA 1OMYA 2K35A 1QQNA 4H5TA 5AQKA 5F0XA 1BRZA 2LJ7A 3L4IA 4CQKA 1HJOA 1I6FA 1TI5A 1NGIA 2QWMA 4GNIA 2NY8X 2A7TA 2KBJA 3LDPA 2QWPA 1PE4A 2KYQA 4H5VA 1NGAA 2KHOA 1ZYVA 5AQQA 1XRSB 1I2VA 5EX5A 1MR4A 1ICAA 2GL1A 3SF4D 1KAYA 2E2FA 5FPMA 2JDQD 2ATBA 2E3GA 5FPEA 2G2KA 1L4VA 1CHZA 2MN5A 4UAFE 1C55A 1ATRA 1S3XA 3KHWA 5AQVA 2KBHA 3QI7A 3QMLA 5EY4A 1YUWA 1SEGA 1LQQA 3ATVA 4KYPA 1SN1A 5F1XA 2QW9A 2V7ZA 3M3ZA 3I33A 2YBRC 5AQJA 5CY0A 2E88A 2KGQA 1ZFUA 1QQMA 1NRAA 3JXUA 5AQWA 2KPYA 2BUPA 2VY6A 5FPNA 2YEOA 2QWNA 2LN8A 1NPIA 3KVGA 2M8BB 1VNBA 1JZBA 1NRBA 1NGDA 5AQZA 1NGGA 3QFUA 1GPTA 1T1TA 3LDLA 2YC1C 4FSVA 1JZAA 1AYJA 1FH3A 1DJTA 3AY9A 4AAZA 5F2RA 4AEIA 1JKZA 2QWLA 2YIPA 4H5NA 1NGBA 1WMTA 1BCGA 1SNBA 1B3CA 5AQMA 2LJMA 2SN3A 1KAZA 1CN2A 1T7EA 2LR3A 1BMRA 1T7BA 1MYNA 3KOXA 5AQTA 2N2RA 1I2UA 1N4NA 2LI7A 1BUPA 1P00A 5AQHA 3C7NA 3D2FA 1HPMA 1NGFA 1BK8A 1LQIA 4HWIA 1P0AA 1NGJA 2N69A 5AQGA 5AQOA 3GL1A 2ASCA 4UJ0A 1ZUTA 2B68A 1K8BA 3E7RL 3D2EA 5EVZA 2LT8A 1SN4A 5AQXA 4H5WA 5BPNA 1DQ7A 3A8YA 3L6QA 5AQSA 1NE5A 1NGCA 5AQYA 1ZVGA 3GKUA 1GPSA 1ZU3A 2KBKA 3L56A 1NH5A 4IO8A 1BA0A 4KBOA 2E3FA 4HHFA 2QWOA 3FZKA 1OZZA 1NGHA 1T0ZA 1NGEA 2YIOA 3QFPA 2QWQA 4UADE 5KK4A 4HE7A 2MZ0A 3FZHA 5AQPA 5AQUA 3KP0A 2D56A 3D2EB 1ZYWA 3IUCA 3KP1A 1QQOA 2YILA 3KC6A 3LDOA 1T7AA 1ZVEA 3R2VA 1ATSA 1VNAA 2E8AA 2I61A 5AR0A 4UAEF 2B3CA 3KOWA 1C56A 5AQNA 1UGLA 2LKBA 3E7UX 3KOZA 5AQIA 2MBKA 3FE1A 1WT7A 4H5RA 2N2QA 1B7DA 2NY9X 1BA1A 2KSKA 2GMOA 3GDQA 2N66A 4FL9A 3FZFA 1LQHA 2E0HA 1KAXA 2QWRA 3PSMA 1AHOA 3C7NB
chains in the Genus database with same CATH topology
1PTXA 1PX9A 2BRZA 2KJAA 4AB0A 4V1DC 2LY5A 1I6GA 1WWNA 1JXCA 1KV0A 2LY6A 1OMYA 1BRZA 2LJ7A 4CQKA 1I6FA 1TI5A 2NY8X 2A7TA 2KBJA 1PE4A 2KYQA 1ZYVA 1I2VA 1ICAA 1MR4A 2GL1A 2ATBA 2E3GA 1L4VA 1CHZA 1C55A 2KBHA 1SEGA 1LQQA 4KYPA 1SN1A 2YBRC 5CY0A 2KGQA 1ZFUA 1NRAA 2KPYA 2YEOA 1NPIA 2M8BB 1VNBA 1JZBA 1NRBA 1GPTA 1T1TA 2YC1C 1JZAA 1AYJA 1FH3A 1DJTA 4AAZA 4AEIA 1JKZA 1WMTA 1BCGA 1SNBA 1B3CA 2LJMA 2SN3A 1CN2A 1T7EA 1BMRA 1T7BA 1MYNA 2N2RA 1I2UA 1N4NA 2LI7A 1P00A 1BK8A 1LQIA 1P0AA 2N69A 2ASCA 4UJ0A 1ZUTA 2B68A 3E7RL 2LT8A 1SN4A 1DQ7A 1NE5A 1ZVGA 1GPSA 1ZU3A 2KBKA 1NH5A 2E3FA 4HHFA 1OZZA 1T0ZA 5KK4A 4HE7A 2MZ0A 1ZYWA 1T7AA 1ZVEA 1VNAA 2I61A 2B3CA 1C56A 2LKBA 3E7UX 2E0HA 1WT7A 2N2QA 1B7DA 2NY9X 2KSKA 2N66A 1LQHA 2LR3A 3PSMA 1AHOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PTX A;  1PX9 A;  2BRZ A;  2KJA A;  4AB0 A;  4V1D C;  2LY5 A;  1I6G A;  1WWN A;  1JXC A;  1KV0 A;  2LY6 A;  1OMY A;  1BRZ A;  2LJ7 A;  4CQK A;  1I6F A;  1TI5 A;  2NY8 X;  2A7T A;  2KBJ A;  1PE4 A;  2KYQ A;  1ZYV A;  1I2V A;  1ICA A;  1MR4 A;  2GL1 A;  2ATB A;  2E3G A;  1L4V A;  1CHZ A;  1C55 A;  2KBH A;  1SEG A;  1LQQ A;  4KYP A;  1SN1 A;  2YBR C;  5CY0 A;  2KGQ A;  1ZFU A;  1NRA A;  2KPY A;  2YEO A;  1NPI A;  2M8B B;  1VNB A;  1JZB A;  1NRB A;  1GPT A;  1T1T A;  2YC1 C;  1JZA A;  1AYJ A;  1FH3 A;  1DJT A;  4AAZ A;  4AEI A;  1JKZ A;  1WMT A;  1BCG A;  1SNB A;  1B3C A;  2LJM A;  2SN3 A;  1CN2 A;  1T7E A;  1BMR A;  1T7B A;  1MYN A;  2N2R A;  1I2U A;  1N4N A;  2LI7 A;  1P00 A;  1BK8 A;  1LQI A;  1P0A A;  2N69 A;  2ASC A;  4UJ0 A;  1ZUT A;  2B68 A;  3E7R L;  2LT8 A;  1SN4 A;  1DQ7 A;  1NE5 A;  1ZVG A;  1GPS A;  1ZU3 A;  2KBK A;  1NH5 A;  2E3F A;  4HHF A;  1OZZ A;  1T0Z A;  5KK4 A;  4HE7 A;  2MZ0 A;  1ZYW A;  1T7A A;  1ZVE A;  1VNA A;  2I61 A;  2B3C A;  1C56 A;  2LKB A;  3E7U X;  2E0H A;  1WT7 A;  2N2Q A;  1B7D A;  2NY9 X;  2KSK A;  2N66 A;  1LQH A;  2LR3 A;  3PSM A;  1AHO A; 
#chains in the Genus database with same CATH topology
 1PTX A;  3D2F B;  5FPD A;  1PX9 A;  3LDQ A;  1DKG D;  3KOY A;  5BN9 A;  2BRZ A;  3ATU A;  5BPM A;  5AQL A;  5BPL A;  3FZM A;  3HSC A;  5BN8 A;  2KJA A;  4AB0 A;  1HX1 A;  1POI A;  3CW4 A;  3CQX A;  4V1D C;  3BK3 C;  2LY5 A;  1I6G A;  3FZL A;  1WWN A;  5AQF A;  1JXC A;  2QXL A;  3LDN A;  5AQR A;  1KV0 A;  2LY6 A;  5EXW A;  1OMY A;  2K35 A;  1QQN A;  4H5T A;  5AQK A;  5F0X A;  1BRZ A;  2LJ7 A;  3L4I A;  4CQK A;  1HJO A;  1I6F A;  1TI5 A;  1NGI A;  2QWM A;  4GNI A;  2NY8 X;  2A7T A;  2KBJ A;  3LDP A;  2QWP A;  1PE4 A;  2KYQ A;  4H5V A;  1NGA A;  2KHO A;  1ZYV A;  5AQQ A;  1XRS B;  1I2V A;  5EX5 A;  1MR4 A;  1ICA A;  2GL1 A;  3SF4 D;  1KAY A;  2E2F A;  5FPM A;  2JDQ D;  2ATB A;  2E3G A;  5FPE A;  2G2K A;  1L4V A;  1CHZ A;  2MN5 A;  4UAF E;  1C55 A;  1ATR A;  1S3X A;  3KHW A;  5AQV A;  2KBH A;  3QI7 A;  3QML A;  5EY4 A;  1YUW A;  1SEG A;  1LQQ A;  3ATV A;  4KYP A;  1SN1 A;  5F1X A;  2QW9 A;  2V7Z A;  3M3Z A;  3I33 A;  2YBR C;  5AQJ A;  5CY0 A;  2E88 A;  2KGQ A;  1ZFU A;  1QQM A;  1NRA A;  3JXU A;  5AQW A;  2KPY A;  2BUP A;  2VY6 A;  5FPN A;  2YEO A;  2QWN A;  2LN8 A;  1NPI A;  3KVG A;  2M8B B;  1VNB A;  1JZB A;  1NRB A;  1NGD A;  5AQZ A;  1NGG A;  3QFU A;  1GPT A;  1T1T A;  3LDL A;  2YC1 C;  4FSV A;  1JZA A;  1AYJ A;  1FH3 A;  1DJT A;  3AY9 A;  4AAZ A;  5F2R A;  4AEI A;  1JKZ A;  2QWL A;  2YIP A;  4H5N A;  1NGB A;  1WMT A;  1BCG A;  1SNB A;  1B3C A;  5AQM A;  2LJM A;  2SN3 A;  1KAZ A;  1CN2 A;  1T7E A;  2LR3 A;  1BMR A;  1T7B A;  1MYN A;  3KOX A;  5AQT A;  2N2R A;  1I2U A;  1N4N A;  2LI7 A;  1BUP A;  1P00 A;  5AQH A;  3C7N A;  3D2F A;  1HPM A;  1NGF A;  1BK8 A;  1LQI A;  4HWI A;  1P0A A;  1NGJ A;  2N69 A;  5AQG A;  5AQO A;  3GL1 A;  2ASC A;  4UJ0 A;  1ZUT A;  2B68 A;  1K8B A;  3E7R L;  3D2E A;  5EVZ A;  2LT8 A;  1SN4 A;  5AQX A;  4H5W A;  5BPN A;  1DQ7 A;  3A8Y A;  3L6Q A;  5AQS A;  1NE5 A;  1NGC A;  5AQY A;  1ZVG A;  3GKU A;  1GPS A;  1ZU3 A;  2KBK A;  3L56 A;  1NH5 A;  4IO8 A;  1BA0 A;  4KBO A;  2E3F A;  4HHF A;  2QWO A;  3FZK A;  1OZZ A;  1NGH A;  1T0Z A;  1NGE A;  2YIO A;  3QFP A;  2QWQ A;  4UAD E;  5KK4 A;  4HE7 A;  2MZ0 A;  3FZH A;  5AQP A;  5AQU A;  3KP0 A;  2D56 A;  3D2E B;  1ZYW A;  3IUC A;  3KP1 A;  1QQO A;  2YIL A;  3KC6 A;  3LDO A;  1T7A A;  1ZVE A;  3R2V A;  1ATS A;  1VNA A;  2E8A A;  2I61 A;  5AR0 A;  4UAE F;  2B3C A;  3KOW A;  1C56 A;  5AQN A;  1UGL A;  2LKB A;  3E7U X;  3KOZ A;  5AQI A;  2MBK A;  3FE1 A;  1WT7 A;  4H5R A;  2N2Q A;  1B7D A;  2NY9 X;  1BA1 A;  2KSK A;  2GMO A;  3GDQ A;  2N66 A;  4FL9 A;  3FZF A;  1LQH A;  2E0H A;  1KAX A;  2QWR A;  3PSM A;  1AHO A;  3C7N B; 
#chains in the Genus database with same CATH homology
 1PTX A;  1PX9 A;  2BRZ A;  2KJA A;  4AB0 A;  4V1D C;  2LY5 A;  1I6G A;  1WWN A;  1JXC A;  1KV0 A;  2LY6 A;  1OMY A;  1BRZ A;  2LJ7 A;  4CQK A;  1I6F A;  1TI5 A;  2NY8 X;  2A7T A;  2KBJ A;  1PE4 A;  2KYQ A;  1ZYV A;  1I2V A;  1ICA A;  1MR4 A;  2GL1 A;  2ATB A;  2E3G A;  1L4V A;  1CHZ A;  1C55 A;  2KBH A;  1SEG A;  1LQQ A;  4KYP A;  1SN1 A;  2YBR C;  5CY0 A;  2KGQ A;  1ZFU A;  1NRA A;  2KPY A;  2YEO A;  1NPI A;  2M8B B;  1VNB A;  1JZB A;  1NRB A;  1GPT A;  1T1T A;  2YC1 C;  1JZA A;  1AYJ A;  1FH3 A;  1DJT A;  4AAZ A;  4AEI A;  1JKZ A;  1WMT A;  1BCG A;  1SNB A;  1B3C A;  2LJM A;  2SN3 A;  1CN2 A;  1T7E A;  1BMR A;  1T7B A;  1MYN A;  2N2R A;  1I2U A;  1N4N A;  2LI7 A;  1P00 A;  1BK8 A;  1LQI A;  1P0A A;  2N69 A;  2ASC A;  4UJ0 A;  1ZUT A;  2B68 A;  3E7R L;  2LT8 A;  1SN4 A;  1DQ7 A;  1NE5 A;  1ZVG A;  1GPS A;  1ZU3 A;  2KBK A;  1NH5 A;  2E3F A;  4HHF A;  1OZZ A;  1T0Z A;  5KK4 A;  4HE7 A;  2MZ0 A;  1ZYW A;  1T7A A;  1ZVE A;  1VNA A;  2I61 A;  2B3C A;  1C56 A;  2LKB A;  3E7U X;  2E0H A;  1WT7 A;  2N2Q A;  1B7D A;  2NY9 X;  2KSK A;  2N66 A;  1LQH A;  2LR3 A;  3PSM A;  1AHO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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