1P0AA

Nmr structure of etd135, mutant of the antifungal defensin ard1 from archaeoprepona demophon
Total Genus 8

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
44
structure length
44
Chain Sequence
DKLIGSCVWGAVNYTSNCNAECKRRGYKGGHCGSFLNVNCWCET

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV2 (31-34)S1 (2-6)TIV1 (15-18)O2 (18-40)O1 (7-32)TII1 (8-11)TI1 (11-14)AH1 (18-25)S2 (29-30)S3 (39-43)TIV3 (33-36)Updating...
connected with : NaN
molecule tags Antifungal protein
source organism Archaeoprepona demophon
publication title Lead optimization of antifungal peptides with 3D NMR structures analysis.
pubmed doi rcsb
molecule keywords DEFENSIN ARD1
total genus 8
structure length 44
sequence length 44
ec nomenclature
pdb deposition date 2003-04-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1p0aA00
1ZVEA 2N2QA 2B68A 3E7UX 1B3CA 1NRBA 1CN2A 1PTXA 1C56A 1SEGA 2LI7A 4HHFA 4AEIA 1AHOA 1VNAA 1JXCA 1OZZA 1LQHA 2ATBA 1ZFUA 4HE7A 1NPIA 1JZBA 1MR4A 2KPYA 2E3GA 1WT7A 2A7TA 2E0HA 1BK8A 5KK4A 2MZ0A 1P0AA 1GPTA 1L4VA 1B7DA 1PE4A 1JZAA 1ZYWA 2KBKA 2LJMA 1BRZA 2BRZA 2KGQA 1AYJA 1T7BA 2YEOA 2YBRC 2LJ7A 1P00A 1VNBA 2N69A 1C55A 1ZYVA 2E3FA 1MYNA 2KSKA 2ASCA 1SN4A 4CQKA 1T1TA 1ICAA 2KYQA 1GPSA 2GL1A 4AB0A 2B3CA 1ZUTA 2NY8X 2I61A 2YC1C 4UJ0A 1CHZA 2KBJA 1ZVGA 2N2RA 4KYPA 3PSMA 1FH3A 2N66A 2LT8A 1LQIA 2NY9X 3E7RL 5CY0A 1OMYA 1I6FA 1DJTA 2M8BB 1NE5A 2SN3A 1SNBA 1KV0A 1WMTA 1SN1A 1JKZA 1NH5A 1BCGA 1ZU3A 1T0ZA 1I6GA 2LY6A 2KBHA 4V1DC 2LKBA 1I2VA 2KJAA 4AAZA 2LR3A 1BMRA 1DQ7A 1N4NA 1LQQA 1T7EA 2LY5A 1PX9A 1I2UA 1NRAA 1TI5A 1T7AA 1WWNA
chains in the Genus database with same CATH superfamily
1ZVEA 2N2QA 1HJOA 2B68A 5AR0A 5EVZA 3E7UX 3A8YA 2QWRA 2BUPA 1KAZA 3C7NA 1B3CA 1BA1A 5AQGA 1NRBA 3FZKA 1NGJA 3KP0A 2YIPA 1ATRA 1CN2A 1PTXA 1NGBA 1C56A 1SEGA 2LI7A 4H5TA 2VY6A 4HHFA 5EXWA 2QWMA 4AEIA 1AHOA 1VNAA 1JXCA 3R2VA 1OZZA 1NGGA 2QW9A 1LQHA 2ATBA 1ZFUA 3CQXA 2QWPA 3LDOA 3FZLA 1NPIA 4HE7A 3KC6A 1JZBA 5EY4A 5BN9A 1MR4A 2KPYA 1WT7A 2E3GA 5BPMA 3L6QA 3ATUA 3D2EB 3D2FB 5AQXA 5FPEA 5AQHA 2A7TA 2QWQA 3GL1A 2E0HA 3FZFA 4IO8A 4UAEF 3D2EA 3D2FA 1BK8A 5KK4A 2MZ0A 3HSCA 1P0AA 5AQJA 2K35A 3KP1A 1GPTA 1L4VA 1B7DA 1PE4A 1JZAA 1ZYWA 2KBKA 2LJMA 3BK3C 4H5RA 2BRZA 2KGQA 3KHWA 1BRZA 1K8BA 1POIA 1HX1A 1NGAA 5EX5A 5AQKA 1AYJA 1T7BA 2YEOA 1UGLA 2YBRC 2LJ7A 5AQSA 1P00A 1VNBA 4HWIA 5AQPA 2LN8A 2N69A 5AQUA 1QQNA 1ZYVA 1C55A 2YIOA 3QI7A 5AQMA 5AQWA 1QQMA 2E3FA 3KOYA 4FL9A 1MYNA 2KSKA 2ASCA 1SN4A 1NGFA 4CQKA 3QMLA 3I33A 1T1TA 4GNIA 1ICAA 2KYQA 3KVGA 1GPSA 3IUCA 1BA0A 2GL1A 3KOWA 2B3CA 1ZUTA 4AB0A 5AQYA 2NY8X 2I61A 1ATSA 1QQOA 2YC1C 1CHZA 1KAYA 3JXUA 4UJ0A 3GDQA 1DKGD 2KBJA 3M3ZA 3KOXA 1ZVGA 2G2KA 2N2RA 4KYPA 5FPDA 2QWNA 5AQZA 4H5WA 2JDQD 3AY9A 3PSMA 2MBKA 4UAFE 1FH3A 2N66A 2LT8A 1LQIA 2MN5A 2NY9X 3CW4A 3E7RL 5CY0A 2KHOA 1OMYA 1I6FA 3LDQA 5AQNA 1DJTA 2M8BB 3LDNA 4H5VA 5FPMA 4H5NA 1NE5A 3FZHA 2YILA 2E8AA 1YUWA 2V7ZA 1BUPA 2SN3A 4UADE 5F1XA 1NGDA 5AQIA 1SNBA 5BN8A 1KV0A 1WMTA 1SN1A 4FSVA 5BPNA 1JKZA 1NH5A 5AQTA 5AQQA 2E88A 1BCGA 5AQRA 3L56A 1ZU3A 1T0ZA 3FZMA 2GMOA 3KOZA 3LDLA 5F2RA 3ATVA 3L4IA 5FPNA 1I6GA 2LY6A 5F0XA 5AQVA 2QWOA 1NGEA 5BPLA 5AQFA 2KBHA 1XRSB 3FE1A 1NGCA 2D56A 3LDPA 3QFPA 4V1DC 2LKBA 1I2VA 1KAXA 2E2FA 2KJAA 2LR3A 4AAZA 3GKUA 1HPMA 5AQLA 1BMRA 1DQ7A 1N4NA 1NGHA 1LQQA 2QXLA 1S3XA 1T7EA 2QWLA 4KBOA 2LY5A 3SF4D 1PX9A 1I2UA 1NGIA 5AQOA 3C7NB 3QFUA 1NRAA 1TI5A 1T7AA 1WWNA
chains in the Genus database with same CATH topology
1ZVEA 2N2QA 2B68A 3E7UX 1B3CA 1NRBA 1CN2A 1PTXA 1C56A 1SEGA 2LI7A 4HHFA 4AEIA 1AHOA 1VNAA 1JXCA 1OZZA 1LQHA 2ATBA 1ZFUA 4HE7A 1NPIA 1JZBA 1MR4A 2KPYA 2E3GA 1WT7A 2A7TA 2E0HA 1BK8A 5KK4A 2MZ0A 1P0AA 1GPTA 1L4VA 1B7DA 1PE4A 1JZAA 1ZYWA 2KBKA 2LJMA 1BRZA 2BRZA 2KGQA 1AYJA 1T7BA 2YEOA 2YBRC 2LJ7A 1P00A 1VNBA 2N69A 1C55A 1ZYVA 2E3FA 1MYNA 2KSKA 2ASCA 1SN4A 4CQKA 1T1TA 1ICAA 2KYQA 1GPSA 2GL1A 4AB0A 2B3CA 1ZUTA 2NY8X 2I61A 2YC1C 4UJ0A 1CHZA 2KBJA 1ZVGA 2N2RA 4KYPA 3PSMA 1FH3A 2N66A 2LT8A 1LQIA 2NY9X 3E7RL 5CY0A 1OMYA 1I6FA 1DJTA 2M8BB 1NE5A 2SN3A 1SNBA 1KV0A 1WMTA 1SN1A 1JKZA 1NH5A 1BCGA 1ZU3A 1T0ZA 1I6GA 2LY6A 2KBHA 4V1DC 2LKBA 1I2VA 2KJAA 4AAZA 2LR3A 1BMRA 1DQ7A 1N4NA 1LQQA 1T7EA 2LY5A 1PX9A 1I2UA 1NRAA 1TI5A 1T7AA 1WWNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZVE A;  2N2Q A;  2B68 A;  3E7U X;  1B3C A;  1NRB A;  1CN2 A;  1PTX A;  1C56 A;  1SEG A;  2LI7 A;  4HHF A;  4AEI A;  1AHO A;  1VNA A;  1JXC A;  1OZZ A;  1LQH A;  2ATB A;  1ZFU A;  4HE7 A;  1NPI A;  1JZB A;  1MR4 A;  2KPY A;  2E3G A;  1WT7 A;  2A7T A;  2E0H A;  1BK8 A;  5KK4 A;  2MZ0 A;  1P0A A;  1GPT A;  1L4V A;  1B7D A;  1PE4 A;  1JZA A;  1ZYW A;  2KBK A;  2LJM A;  1BRZ A;  2BRZ A;  2KGQ A;  1AYJ A;  1T7B A;  2YEO A;  2YBR C;  2LJ7 A;  1P00 A;  1VNB A;  2N69 A;  1C55 A;  1ZYV A;  2E3F A;  1MYN A;  2KSK A;  2ASC A;  1SN4 A;  4CQK A;  1T1T A;  1ICA A;  2KYQ A;  1GPS A;  2GL1 A;  4AB0 A;  2B3C A;  1ZUT A;  2NY8 X;  2I61 A;  2YC1 C;  4UJ0 A;  1CHZ A;  2KBJ A;  1ZVG A;  2N2R A;  4KYP A;  3PSM A;  1FH3 A;  2N66 A;  2LT8 A;  1LQI A;  2NY9 X;  3E7R L;  5CY0 A;  1OMY A;  1I6F A;  1DJT A;  2M8B B;  1NE5 A;  2SN3 A;  1SNB A;  1KV0 A;  1WMT A;  1SN1 A;  1JKZ A;  1NH5 A;  1BCG A;  1ZU3 A;  1T0Z A;  1I6G A;  2LY6 A;  2KBH A;  4V1D C;  2LKB A;  1I2V A;  2KJA A;  4AAZ A;  2LR3 A;  1BMR A;  1DQ7 A;  1N4N A;  1LQQ A;  1T7E A;  2LY5 A;  1PX9 A;  1I2U A;  1NRA A;  1TI5 A;  1T7A A;  1WWN A; 
#chains in the Genus database with same CATH topology
 1ZVE A;  2N2Q A;  1HJO A;  2B68 A;  5AR0 A;  5EVZ A;  3E7U X;  3A8Y A;  2QWR A;  2BUP A;  1KAZ A;  3C7N A;  1B3C A;  1BA1 A;  5AQG A;  1NRB A;  3FZK A;  1NGJ A;  3KP0 A;  2YIP A;  1ATR A;  1CN2 A;  1PTX A;  1NGB A;  1C56 A;  1SEG A;  2LI7 A;  4H5T A;  2VY6 A;  4HHF A;  5EXW A;  2QWM A;  4AEI A;  1AHO A;  1VNA A;  1JXC A;  3R2V A;  1OZZ A;  1NGG A;  2QW9 A;  1LQH A;  2ATB A;  1ZFU A;  3CQX A;  2QWP A;  3LDO A;  3FZL A;  1NPI A;  4HE7 A;  3KC6 A;  1JZB A;  5EY4 A;  5BN9 A;  1MR4 A;  2KPY A;  1WT7 A;  2E3G A;  5BPM A;  3L6Q A;  3ATU A;  3D2E B;  3D2F B;  5AQX A;  5FPE A;  5AQH A;  2A7T A;  2QWQ A;  3GL1 A;  2E0H A;  3FZF A;  4IO8 A;  4UAE F;  3D2E A;  3D2F A;  1BK8 A;  5KK4 A;  2MZ0 A;  3HSC A;  1P0A A;  5AQJ A;  2K35 A;  3KP1 A;  1GPT A;  1L4V A;  1B7D A;  1PE4 A;  1JZA A;  1ZYW A;  2KBK A;  2LJM A;  3BK3 C;  4H5R A;  2BRZ A;  2KGQ A;  3KHW A;  1BRZ A;  1K8B A;  1POI A;  1HX1 A;  1NGA A;  5EX5 A;  5AQK A;  1AYJ A;  1T7B A;  2YEO A;  1UGL A;  2YBR C;  2LJ7 A;  5AQS A;  1P00 A;  1VNB A;  4HWI A;  5AQP A;  2LN8 A;  2N69 A;  5AQU A;  1QQN A;  1ZYV A;  1C55 A;  2YIO A;  3QI7 A;  5AQM A;  5AQW A;  1QQM A;  2E3F A;  3KOY A;  4FL9 A;  1MYN A;  2KSK A;  2ASC A;  1SN4 A;  1NGF A;  4CQK A;  3QML A;  3I33 A;  1T1T A;  4GNI A;  1ICA A;  2KYQ A;  3KVG A;  1GPS A;  3IUC A;  1BA0 A;  2GL1 A;  3KOW A;  2B3C A;  1ZUT A;  4AB0 A;  5AQY A;  2NY8 X;  2I61 A;  1ATS A;  1QQO A;  2YC1 C;  1CHZ A;  1KAY A;  3JXU A;  4UJ0 A;  3GDQ A;  1DKG D;  2KBJ A;  3M3Z A;  3KOX A;  1ZVG A;  2G2K A;  2N2R A;  4KYP A;  5FPD A;  2QWN A;  5AQZ A;  4H5W A;  2JDQ D;  3AY9 A;  3PSM A;  2MBK A;  4UAF E;  1FH3 A;  2N66 A;  2LT8 A;  1LQI A;  2MN5 A;  2NY9 X;  3CW4 A;  3E7R L;  5CY0 A;  2KHO A;  1OMY A;  1I6F A;  3LDQ A;  5AQN A;  1DJT A;  2M8B B;  3LDN A;  4H5V A;  5FPM A;  4H5N A;  1NE5 A;  3FZH A;  2YIL A;  2E8A A;  1YUW A;  2V7Z A;  1BUP A;  2SN3 A;  4UAD E;  5F1X A;  1NGD A;  5AQI A;  1SNB A;  5BN8 A;  1KV0 A;  1WMT A;  1SN1 A;  4FSV A;  5BPN A;  1JKZ A;  1NH5 A;  5AQT A;  5AQQ A;  2E88 A;  1BCG A;  5AQR A;  3L56 A;  1ZU3 A;  1T0Z A;  3FZM A;  2GMO A;  3KOZ A;  3LDL A;  5F2R A;  3ATV A;  3L4I A;  5FPN A;  1I6G A;  2LY6 A;  5F0X A;  5AQV A;  2QWO A;  1NGE A;  5BPL A;  5AQF A;  2KBH A;  1XRS B;  3FE1 A;  1NGC A;  2D56 A;  3LDP A;  3QFP A;  4V1D C;  2LKB A;  1I2V A;  1KAX A;  2E2F A;  2KJA A;  2LR3 A;  4AAZ A;  3GKU A;  1HPM A;  5AQL A;  1BMR A;  1DQ7 A;  1N4N A;  1NGH A;  1LQQ A;  2QXL A;  1S3X A;  1T7E A;  2QWL A;  4KBO A;  2LY5 A;  3SF4 D;  1PX9 A;  1I2U A;  1NGI A;  5AQO A;  3C7N B;  3QFU A;  1NRA A;  1TI5 A;  1T7A A;  1WWN A; 
#chains in the Genus database with same CATH homology
 1ZVE A;  2N2Q A;  2B68 A;  3E7U X;  1B3C A;  1NRB A;  1CN2 A;  1PTX A;  1C56 A;  1SEG A;  2LI7 A;  4HHF A;  4AEI A;  1AHO A;  1VNA A;  1JXC A;  1OZZ A;  1LQH A;  2ATB A;  1ZFU A;  4HE7 A;  1NPI A;  1JZB A;  1MR4 A;  2KPY A;  2E3G A;  1WT7 A;  2A7T A;  2E0H A;  1BK8 A;  5KK4 A;  2MZ0 A;  1P0A A;  1GPT A;  1L4V A;  1B7D A;  1PE4 A;  1JZA A;  1ZYW A;  2KBK A;  2LJM A;  1BRZ A;  2BRZ A;  2KGQ A;  1AYJ A;  1T7B A;  2YEO A;  2YBR C;  2LJ7 A;  1P00 A;  1VNB A;  2N69 A;  1C55 A;  1ZYV A;  2E3F A;  1MYN A;  2KSK A;  2ASC A;  1SN4 A;  4CQK A;  1T1T A;  1ICA A;  2KYQ A;  1GPS A;  2GL1 A;  4AB0 A;  2B3C A;  1ZUT A;  2NY8 X;  2I61 A;  2YC1 C;  4UJ0 A;  1CHZ A;  2KBJ A;  1ZVG A;  2N2R A;  4KYP A;  3PSM A;  1FH3 A;  2N66 A;  2LT8 A;  1LQI A;  2NY9 X;  3E7R L;  5CY0 A;  1OMY A;  1I6F A;  1DJT A;  2M8B B;  1NE5 A;  2SN3 A;  1SNB A;  1KV0 A;  1WMT A;  1SN1 A;  1JKZ A;  1NH5 A;  1BCG A;  1ZU3 A;  1T0Z A;  1I6G A;  2LY6 A;  2KBH A;  4V1D C;  2LKB A;  1I2V A;  2KJA A;  4AAZ A;  2LR3 A;  1BMR A;  1DQ7 A;  1N4N A;  1LQQ A;  1T7E A;  2LY5 A;  1PX9 A;  1I2U A;  1NRA A;  1TI5 A;  1T7A A;  1WWN A; 
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