1UGLA

Solution structure of s8-sp11
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
50
structure length
50
Chain Sequence
NLMKRCTRGFRKLGKCTTLEEEKCKTLYPRGQCTCSDSKMNTHSCDCKSC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of the Male Determinant Factor for Brassica Self-incompatibility
pubmed doi rcsb
molecule tags Plant protein
molecule keywords S-locus pollen protein
total genus 7
structure length 50
sequence length 50
ec nomenclature
pdb deposition date 2003-06-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.70 Alpha Beta 2-Layer Sandwich Defensin A-like Scorpion toxin-like 1uglA00
1UGLA
chains in the Genus database with same CATH superfamily
5BPLA 5AQIA 4UAEF 2JDQD 3L56A 3L6QA 5AQRA 3C7NB 1NGDA 5AQLA 4HE7A 5AQVA 3FZKA 3KP1A 5AQOA 2NY8X 3E7RL 3FZFA 1QQOA 3FZHA 1BRZA 1PTXA 4UAFE 1ICAA 1NE5A 3QMLA 1CN2A 1P0AA 4AEIA 2K35A 3QFPA 3FZMA 1JKZA 1DJTA 1LQIA 5CY0A 3LDLA 3FE1A 3KHWA 1PX9A 1SN4A 2LJMA 1P00A 2SN3A 3PSMA 1ZU3A 5BPNA 2I61A 2QXLA 3A8YA 2BRZA 4H5WA 1POIA 3AY9A 1QQNA 2KGQA 1JXCA 1NH5A 5FPNA 2LY6A 4FL9A 4KBOA 3GDQA 4GNIA 5EXWA 1GPTA 1K8BA 1NPIA 2KBHA 1NGHA 2LJ7A 2KJAA 2ATBA 2YBRC 3FZLA 1I6GA 3ATUA 4CQKA 1S3XA 3LDPA 1T0ZA 1BCGA 2MBKA 3I33A 1KV0A 1WMTA 1NGIA 1KAYA 1WT7A 3D2EB 4KYPA 3KOWA 3KOZA 5KK4A 3IUCA 3QI7A 5AQNA 1PE4A 5F2RA 5AQZA 4H5TA 3D2FB 2D56A 1WWNA 1MYNA 4H5RA 5AQQA 5FPMA 5FPDA 2N69A 1OMYA 1UGLA 3LDQA 2E3FA 1ZYVA 5AQKA 5AR0A 1BMRA 1JZAA 2QWRA 2N2RA 5AQYA 5AQMA 1AHOA 1BUPA 1QQMA 5AQPA 1BA1A 1VNBA 1ZUTA 5FPEA 1LQHA 1I2VA 1SN1A 2E88A 2LT8A 3SF4D 2QWPA 1C55A 4AAZA 1OZZA 2LKBA 2KHOA 5AQHA 1L4VA 3LDOA 2GMOA 3BK3C 3C7NA 1BK8A 5F0XA 5AQUA 5BPMA 2E3GA 1I6FA 2E2FA 3HSCA 2BUPA 2QWMA 2E8AA 3CQXA 1GPSA 2GL1A 2V7ZA 1MR4A 1NRAA 1NGAA 1HPMA 2N2QA 5EX5A 3QFUA 2YIOA 5AQFA 2YC1C 3E7UX 1NGFA 5BN9A 4HHFA 1B3CA 1NGGA 1ZVGA 1KAXA 2LR3A 1C56A 5EVZA 1HX1A 1NGCA 3KVGA 3GL1A 1AYJA 4H5VA 1LQQA 4UADE 1TI5A 3CW4A 4HWIA 2VY6A 4FSVA 1ATSA 1JZBA 4IO8A 2LI7A 1DKGD 1ZVEA 2ASCA 1XRSB 2QW9A 3JXUA 3KC6A 5AQXA 5AQTA 1B7DA 4AB0A 1NGEA 1T7BA 2B3CA 2E0HA 1N4NA 2QWQA 5AQWA 2YEOA 2MZ0A 5EY4A 2QWNA 5BN8A 2MN5A 2KPYA 3D2EA 3KP0A 3M3ZA 2N66A 4V1DC 1HJOA 2LN8A 1SEGA 1T1TA 3ATVA 1FH3A 3D2FA 3R2VA 3L4IA 2KBKA 3KOXA 1CHZA 1T7AA 1KAZA 3KOYA 2KBJA 2B68A 3LDNA 5AQSA 1I2UA 1ZYWA 1NGBA 4H5NA 1DQ7A 2QWOA 2G2KA 1ZFUA 5F1XA 1NRBA 3GKUA 2KYQA 2KSKA 1YUWA 2YILA 5AQGA 1SNBA 2QWLA 5AQJA 2M8BB 1VNAA 2LY5A 2NY9X 1NGJA 1T7EA 1ATRA 2A7TA 2YIPA 4UJ0A 1BA0A
chains in the Genus database with same CATH topology
1UGLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UGL A; 
#chains in the Genus database with same CATH topology
 5BPL A;  5AQI A;  4UAE F;  2JDQ D;  3L56 A;  3L6Q A;  5AQR A;  3C7N B;  1NGD A;  5AQL A;  4HE7 A;  5AQV A;  3FZK A;  3KP1 A;  5AQO A;  2NY8 X;  3E7R L;  3FZF A;  1QQO A;  3FZH A;  1BRZ A;  1PTX A;  4UAF E;  1ICA A;  1NE5 A;  3QML A;  1CN2 A;  1P0A A;  4AEI A;  2K35 A;  3QFP A;  3FZM A;  1JKZ A;  1DJT A;  1LQI A;  5CY0 A;  3LDL A;  3FE1 A;  3KHW A;  1PX9 A;  1SN4 A;  2LJM A;  1P00 A;  2SN3 A;  3PSM A;  1ZU3 A;  5BPN A;  2I61 A;  2QXL A;  3A8Y A;  2BRZ A;  4H5W A;  1POI A;  3AY9 A;  1QQN A;  2KGQ A;  1JXC A;  1NH5 A;  5FPN A;  2LY6 A;  4FL9 A;  4KBO A;  3GDQ A;  4GNI A;  5EXW A;  1GPT A;  1K8B A;  1NPI A;  2KBH A;  1NGH A;  2LJ7 A;  2KJA A;  2ATB A;  2YBR C;  3FZL A;  1I6G A;  3ATU A;  4CQK A;  1S3X A;  3LDP A;  1T0Z A;  1BCG A;  2MBK A;  3I33 A;  1KV0 A;  1WMT A;  1NGI A;  1KAY A;  1WT7 A;  3D2E B;  4KYP A;  3KOW A;  3KOZ A;  5KK4 A;  3IUC A;  3QI7 A;  5AQN A;  1PE4 A;  5F2R A;  5AQZ A;  4H5T A;  3D2F B;  2D56 A;  1WWN A;  1MYN A;  4H5R A;  5AQQ A;  5FPM A;  5FPD A;  2N69 A;  1OMY A;  1UGL A;  3LDQ A;  2E3F A;  1ZYV A;  5AQK A;  5AR0 A;  1BMR A;  1JZA A;  2QWR A;  2N2R A;  5AQY A;  5AQM A;  1AHO A;  1BUP A;  1QQM A;  5AQP A;  1BA1 A;  1VNB A;  1ZUT A;  5FPE A;  1LQH A;  1I2V A;  1SN1 A;  2E88 A;  2LT8 A;  3SF4 D;  2QWP A;  1C55 A;  4AAZ A;  1OZZ A;  2LKB A;  2KHO A;  5AQH A;  1L4V A;  3LDO A;  2GMO A;  3BK3 C;  3C7N A;  1BK8 A;  5F0X A;  5AQU A;  5BPM A;  2E3G A;  1I6F A;  2E2F A;  3HSC A;  2BUP A;  2QWM A;  2E8A A;  3CQX A;  1GPS A;  2GL1 A;  2V7Z A;  1MR4 A;  1NRA A;  1NGA A;  1HPM A;  2N2Q A;  5EX5 A;  3QFU A;  2YIO A;  5AQF A;  2YC1 C;  3E7U X;  1NGF A;  5BN9 A;  4HHF A;  1B3C A;  1NGG A;  1ZVG A;  1KAX A;  2LR3 A;  1C56 A;  5EVZ A;  1HX1 A;  1NGC A;  3KVG A;  3GL1 A;  1AYJ A;  4H5V A;  1LQQ A;  4UAD E;  1TI5 A;  3CW4 A;  4HWI A;  2VY6 A;  4FSV A;  1ATS A;  1JZB A;  4IO8 A;  2LI7 A;  1DKG D;  1ZVE A;  2ASC A;  1XRS B;  2QW9 A;  3JXU A;  3KC6 A;  5AQX A;  5AQT A;  1B7D A;  4AB0 A;  1NGE A;  1T7B A;  2B3C A;  2E0H A;  1N4N A;  2QWQ A;  5AQW A;  2YEO A;  2MZ0 A;  5EY4 A;  2QWN A;  5BN8 A;  2MN5 A;  2KPY A;  3D2E A;  3KP0 A;  3M3Z A;  2N66 A;  4V1D C;  1HJO A;  2LN8 A;  1SEG A;  1T1T A;  3ATV A;  1FH3 A;  3D2F A;  3R2V A;  3L4I A;  2KBK A;  3KOX A;  1CHZ A;  1T7A A;  1KAZ A;  3KOY A;  2KBJ A;  2B68 A;  3LDN A;  5AQS A;  1I2U A;  1ZYW A;  1NGB A;  4H5N A;  1DQ7 A;  2QWO A;  2G2K A;  1ZFU A;  5F1X A;  1NRB A;  3GKU A;  2KYQ A;  2KSK A;  1YUW A;  2YIL A;  5AQG A;  1SNB A;  2QWL A;  5AQJ A;  2M8B B;  1VNA A;  2LY5 A;  2NY9 X;  1NGJ A;  1T7E A;  1ATR A;  2A7T A;  2YIP A;  4UJ0 A;  1BA0 A; 
#chains in the Genus database with same CATH homology
 1UGL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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