1UGLA

Solution structure of s8-sp11
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
50
structure length
50
Chain Sequence
NLMKRCTRGFRKLGKCTTLEEEKCKTLYPRGQCTCSDSKMNTHSCDCKSC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of the Male Determinant Factor for Brassica Self-incompatibility
pubmed doi rcsb
molecule tags Plant protein
molecule keywords S-locus pollen protein
total genus 7
structure length 50
sequence length 50
ec nomenclature
pdb deposition date 2003-06-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.70 Alpha Beta 2-Layer Sandwich Defensin A-like Scorpion toxin-like 1uglA00
1UGLA
chains in the Genus database with same CATH superfamily
1C55A 1KAYA 5BPLA 1ZFUA 1JKZA 5BN8A 5AQYA 1GPSA 1S3XA 2GMOA 1GPTA 1QQOA 5FPDA 1T7EA 4AB0A 1BA1A 1NGDA 1N4NA 3A8YA 5AQRA 2E3FA 5AQZA 1ZYWA 1ZYVA 3KOZA 1JZBA 3D2FA 2BRZA 3KHWA 3D2EA 4AEIA 1AHOA 2JDQD 5AQNA 1T7AA 3FZLA 3BK3C 1DKGD 5AQUA 1QQMA 2KBKA 2LY6A 5BPNA 3C7NB 1YUWA 2QWPA 5EXWA 2KPYA 4UADE 5AQMA 4AAZA 2E0HA 4UAEF 2K35A 1I6GA 1KV0A 5AQXA 2MN5A 2QWOA 1KAZA 1VNBA 2N2QA 5AQHA 2LJ7A 3QFPA 2LN8A 3I33A 5AQIA 1SN1A 4V1DC 1PE4A 2QWQA 5AQJA 5EY4A 1BCGA 4H5VA 5F0XA 3KVGA 3IUCA 3LDQA 5CY0A 3FZHA 5AQLA 1P0AA 1PTXA 2KHOA 1ATSA 1ZUTA 3D2EB 1NRBA 1WWNA 1ATRA 1HJOA 1JXCA 2LT8A 1T1TA 1K8BA 5AQQA 2V7ZA 2LY5A 1JZAA 1L4VA 1ZU3A 2ASCA 2LJMA 1NE5A 3KOWA 1BRZA 5AQGA 3KOYA 2D56A 2N2RA 2QW9A 3LDPA 5AQFA 3L6QA 1NH5A 5AQWA 2KJAA 1KAXA 3R2VA 5EVZA 2YBRC 2E3GA 1XRSB 2N66A 2QWMA 2YEOA 5BPMA 1ZVEA 2YIOA 2YILA 2SN3A 3ATVA 1P00A 3HSCA 3LDOA 4UAFE 2E8AA 1BA0A 1NGGA 4H5NA 1NGFA 5FPMA 3FZKA 1I2VA 3JXUA 4H5TA 5FPEA 2NY9X 1CHZA 2G2KA 4HWIA 5AQKA 2BUPA 3L56A 3CQXA 1UGLA 1T0ZA 2YIPA 3D2FB 1POIA 1HX1A 2KGQA 3GKUA 1B7DA 1VNAA 5AQVA 1NGIA 5BN9A 3CW4A 1C56A 1AYJA 3L4IA 4GNIA 1BUPA 1NGEA 3E7RL 3KC6A 2KBJA 4CQKA 1I6FA 2B3CA 3QFUA 4UJ0A 1NPIA 3LDNA 4H5WA 4HHFA 1SNBA 2KYQA 1BMRA 4FSVA 5AQPA 1MYNA 4H5RA 1SN4A 2E88A 5FPNA 4IO8A 3SF4D 2QXLA 1NGBA 1PX9A 1DJTA 3AY9A 2VY6A 4FL9A 1WMTA 5AQSA 5F1XA 1LQQA 3KP0A 1HPMA 1NGAA 2LKBA 3GL1A 2QWRA 1ICAA 2NY8X 1B3CA 1ZVGA 2N69A 1LQHA 2B68A 1T7BA 1SEGA 1MR4A 2E2FA 2KSKA 4HE7A 2MBKA 4KYPA 1NGHA 1TI5A 2A7TA 1NGJA 1CN2A 1WT7A 2MZ0A 3ATUA 2GL1A 3FZFA 1OMYA 2LI7A 3FZMA 3PSMA 3QMLA 5AQOA 2I61A 2KBHA 5AQTA 2LR3A 1LQIA 1NGCA 1NRAA 1OZZA 2YC1C 1QQNA 3FE1A 3KOXA 3M3ZA 5EX5A 2QWNA 2M8BB 3LDLA 1DQ7A 2ATBA 3QI7A 1FH3A 1I2UA 5F2RA 1BK8A 2QWLA 4KBOA 3C7NA 5KK4A 3E7UX 3GDQA 3KP1A 5AR0A
chains in the Genus database with same CATH topology
1UGLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UGL A; 
#chains in the Genus database with same CATH topology
 1C55 A;  1KAY A;  5BPL A;  1ZFU A;  1JKZ A;  5BN8 A;  5AQY A;  1GPS A;  1S3X A;  2GMO A;  1GPT A;  1QQO A;  5FPD A;  1T7E A;  4AB0 A;  1BA1 A;  1NGD A;  1N4N A;  3A8Y A;  5AQR A;  2E3F A;  5AQZ A;  1ZYW A;  1ZYV A;  3KOZ A;  1JZB A;  3D2F A;  2BRZ A;  3KHW A;  3D2E A;  4AEI A;  1AHO A;  2JDQ D;  5AQN A;  1T7A A;  3FZL A;  3BK3 C;  1DKG D;  5AQU A;  1QQM A;  2KBK A;  2LY6 A;  5BPN A;  3C7N B;  1YUW A;  2QWP A;  5EXW A;  2KPY A;  4UAD E;  5AQM A;  4AAZ A;  2E0H A;  4UAE F;  2K35 A;  1I6G A;  1KV0 A;  5AQX A;  2MN5 A;  2QWO A;  1KAZ A;  1VNB A;  2N2Q A;  5AQH A;  2LJ7 A;  3QFP A;  2LN8 A;  3I33 A;  5AQI A;  1SN1 A;  4V1D C;  1PE4 A;  2QWQ A;  5AQJ A;  5EY4 A;  1BCG A;  4H5V A;  5F0X A;  3KVG A;  3IUC A;  3LDQ A;  5CY0 A;  3FZH A;  5AQL A;  1P0A A;  1PTX A;  2KHO A;  1ATS A;  1ZUT A;  3D2E B;  1NRB A;  1WWN A;  1ATR A;  1HJO A;  1JXC A;  2LT8 A;  1T1T A;  1K8B A;  5AQQ A;  2V7Z A;  2LY5 A;  1JZA A;  1L4V A;  1ZU3 A;  2ASC A;  2LJM A;  1NE5 A;  3KOW A;  1BRZ A;  5AQG A;  3KOY A;  2D56 A;  2N2R A;  2QW9 A;  3LDP A;  5AQF A;  3L6Q A;  1NH5 A;  5AQW A;  2KJA A;  1KAX A;  3R2V A;  5EVZ A;  2YBR C;  2E3G A;  1XRS B;  2N66 A;  2QWM A;  2YEO A;  5BPM A;  1ZVE A;  2YIO A;  2YIL A;  2SN3 A;  3ATV A;  1P00 A;  3HSC A;  3LDO A;  4UAF E;  2E8A A;  1BA0 A;  1NGG A;  4H5N A;  1NGF A;  5FPM A;  3FZK A;  1I2V A;  3JXU A;  4H5T A;  5FPE A;  2NY9 X;  1CHZ A;  2G2K A;  4HWI A;  5AQK A;  2BUP A;  3L56 A;  3CQX A;  1UGL A;  1T0Z A;  2YIP A;  3D2F B;  1POI A;  1HX1 A;  2KGQ A;  3GKU A;  1B7D A;  1VNA A;  5AQV A;  1NGI A;  5BN9 A;  3CW4 A;  1C56 A;  1AYJ A;  3L4I A;  4GNI A;  1BUP A;  1NGE A;  3E7R L;  3KC6 A;  2KBJ A;  4CQK A;  1I6F A;  2B3C A;  3QFU A;  4UJ0 A;  1NPI A;  3LDN A;  4H5W A;  4HHF A;  1SNB A;  2KYQ A;  1BMR A;  4FSV A;  5AQP A;  1MYN A;  4H5R A;  1SN4 A;  2E88 A;  5FPN A;  4IO8 A;  3SF4 D;  2QXL A;  1NGB A;  1PX9 A;  1DJT A;  3AY9 A;  2VY6 A;  4FL9 A;  1WMT A;  5AQS A;  5F1X A;  1LQQ A;  3KP0 A;  1HPM A;  1NGA A;  2LKB A;  3GL1 A;  2QWR A;  1ICA A;  2NY8 X;  1B3C A;  1ZVG A;  2N69 A;  1LQH A;  2B68 A;  1T7B A;  1SEG A;  1MR4 A;  2E2F A;  2KSK A;  4HE7 A;  2MBK A;  4KYP A;  1NGH A;  1TI5 A;  2A7T A;  1NGJ A;  1CN2 A;  1WT7 A;  2MZ0 A;  3ATU A;  2GL1 A;  3FZF A;  1OMY A;  2LI7 A;  3FZM A;  3PSM A;  3QML A;  5AQO A;  2I61 A;  2KBH A;  5AQT A;  2LR3 A;  1LQI A;  1NGC A;  1NRA A;  1OZZ A;  2YC1 C;  1QQN A;  3FE1 A;  3KOX A;  3M3Z A;  5EX5 A;  2QWN A;  2M8B B;  3LDL A;  1DQ7 A;  2ATB A;  3QI7 A;  1FH3 A;  1I2U A;  5F2R A;  1BK8 A;  2QWL A;  4KBO A;  3C7N A;  5KK4 A;  3E7U X;  3GDQ A;  3KP1 A;  5AR0 A; 
#chains in the Genus database with same CATH homology
 1UGL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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