1UGLA

Solution structure of s8-sp11
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
50
structure length
50
Chain Sequence
NLMKRCTRGFRKLGKCTTLEEEKCKTLYPRGQCTCSDSKMNTHSCDCKSC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of the Male Determinant Factor for Brassica Self-incompatibility
pubmed doi rcsb
molecule tags Plant protein
molecule keywords S-locus pollen protein
total genus 7
structure length 50
sequence length 50
ec nomenclature
pdb deposition date 2003-06-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.70 Alpha Beta 2-Layer Sandwich Defensin A-like Scorpion toxin-like 1uglA00
1UGLA
chains in the Genus database with same CATH superfamily
2I61A 2SN3A 5AQYA 1I6GA 3PSMA 3KC6A 2E88A 1OZZA 2N2RA 2QWQA 3FZFA 5AQQA 3FZKA 2YC1C 3I33A 4UAFE 3GKUA 3KOWA 5AQNA 2YEOA 3E7UX 3KVGA 3JXUA 1NGHA 1BK8A 1HJOA 3C7NB 5AQZA 1ZVGA 2KBKA 2E2FA 2LY5A 2N69A 1HX1A 5FPEA 1B3CA 5F2RA 4IO8A 3KOXA 5AQMA 2QXLA 5CY0A 1BA1A 4HE7A 1WMTA 2GMOA 3FE1A 1I2UA 5EXWA 3QMLA 2G2KA 1ATRA 2VY6A 4H5VA 3L56A 3QFPA 2YILA 5F1XA 1KAZA 4V1DC 3GL1A 3KOYA 3M3ZA 2JDQD 5EY4A 1NGGA 2ATBA 3D2EB 2KJAA 4H5TA 1LQQA 1KAYA 2D56A 3ATVA 1PE4A 3LDNA 2MZ0A 4UADE 1VNAA 1MYNA 2NY9X 3FZMA 3L6QA 2LN8A 5AQKA 1BMRA 1JKZA 2QW9A 3IUCA 1ICAA 3LDPA 3D2EA 3KP1A 1ZUTA 2LI7A 2YIPA 1NGIA 1I2VA 1CN2A 2BRZA 1ATSA 1NPIA 1T0ZA 1MR4A 2LJMA 1TI5A 1ZU3A 3L4IA 1PX9A 3AY9A 1QQMA 1NGBA 1AHOA 3CW4A 1LQHA 3D2FA 3KP0A 4HWIA 2YBRC 5AQRA 4GNIA 4AAZA 1NGFA 2LJ7A 4CQKA 1BCGA 4FSVA 1NRBA 1T7EA 1ZFUA 5AQHA 1GPSA 2A7TA 5AQXA 2M8BB 1NGCA 4AB0A 1NGJA 5AQOA 4H5RA 3CQXA 1XRSB 2ASCA 3QFUA 2N66A 1NGDA 1L4VA 2LY6A 4UJ0A 2LT8A 3SF4D 5AQWA 1NGEA 2E3GA 1GPTA 3D2FB 5FPDA 1JXCA 1BUPA 1UGLA 1ZYWA 3LDLA 1JZBA 1SNBA 3GDQA 5KK4A 2KBJA 5AQSA 2KBHA 2QWLA 3FZHA 5AQGA 1WWNA 5AQJA 1LQIA 5AQVA 4H5WA 1K8BA 4AEIA 2B3CA 1WT7A 3HSCA 1PTXA 1SEGA 1SN4A 5FPNA 1JZAA 5AQLA 5FPMA 3FZLA 5AQIA 1ZYVA 1B7DA 3QI7A 1DQ7A 1NGAA 2QWPA 5F0XA 5BN9A 2LKBA 4HHFA 2QWNA 5BPMA 1OMYA 2KHOA 1BRZA 1YUWA 4KYPA 1ZVEA 2LR3A 4UAEF 2KSKA 2E0HA 2V7ZA 1NH5A 1C55A 3LDOA 1VNBA 1NE5A 1P00A 3LDQA 5EVZA 2K35A 2GL1A 5BPNA 2QWOA 2B68A 1FH3A 2QWRA 2KPYA 2BUPA 1CHZA 1HPMA 1T7BA 1QQOA 1S3XA 2KYQA 1QQNA 2NY8X 3A8YA 3ATUA 3E7RL 4KBOA 5AQUA 1KAXA 5BN8A 1DJTA 1T1TA 1SN1A 2QWMA 1BA0A 2MBKA 2YIOA 1T7AA 2E3FA 5EX5A 1AYJA 1DKGD 1POIA 5AQFA 1KV0A 2E8AA 2N2QA 4H5NA 3BK3C 5AQPA 3C7NA 3KHWA 5AQTA 2MN5A 3KOZA 1C56A 1NRAA 1P0AA 1N4NA 5AR0A 2KGQA 5BPLA 4FL9A 3R2VA 1I6FA
chains in the Genus database with same CATH topology
1UGLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UGL A; 
#chains in the Genus database with same CATH topology
 2I61 A;  2SN3 A;  5AQY A;  1I6G A;  3PSM A;  3KC6 A;  2E88 A;  1OZZ A;  2N2R A;  2QWQ A;  3FZF A;  5AQQ A;  3FZK A;  2YC1 C;  3I33 A;  4UAF E;  3GKU A;  3KOW A;  5AQN A;  2YEO A;  3E7U X;  3KVG A;  3JXU A;  1NGH A;  1BK8 A;  1HJO A;  3C7N B;  5AQZ A;  1ZVG A;  2KBK A;  2E2F A;  2LY5 A;  2N69 A;  1HX1 A;  5FPE A;  1B3C A;  5F2R A;  4IO8 A;  3KOX A;  5AQM A;  2QXL A;  5CY0 A;  1BA1 A;  4HE7 A;  1WMT A;  2GMO A;  3FE1 A;  1I2U A;  5EXW A;  3QML A;  2G2K A;  1ATR A;  2VY6 A;  4H5V A;  3L56 A;  3QFP A;  2YIL A;  5F1X A;  1KAZ A;  4V1D C;  3GL1 A;  3KOY A;  3M3Z A;  2JDQ D;  5EY4 A;  1NGG A;  2ATB A;  3D2E B;  2KJA A;  4H5T A;  1LQQ A;  1KAY A;  2D56 A;  3ATV A;  1PE4 A;  3LDN A;  2MZ0 A;  4UAD E;  1VNA A;  1MYN A;  2NY9 X;  3FZM A;  3L6Q A;  2LN8 A;  5AQK A;  1BMR A;  1JKZ A;  2QW9 A;  3IUC A;  1ICA A;  3LDP A;  3D2E A;  3KP1 A;  1ZUT A;  2LI7 A;  2YIP A;  1NGI A;  1I2V A;  1CN2 A;  2BRZ A;  1ATS A;  1NPI A;  1T0Z A;  1MR4 A;  2LJM A;  1TI5 A;  1ZU3 A;  3L4I A;  1PX9 A;  3AY9 A;  1QQM A;  1NGB A;  1AHO A;  3CW4 A;  1LQH A;  3D2F A;  3KP0 A;  4HWI A;  2YBR C;  5AQR A;  4GNI A;  4AAZ A;  1NGF A;  2LJ7 A;  4CQK A;  1BCG A;  4FSV A;  1NRB A;  1T7E A;  1ZFU A;  5AQH A;  1GPS A;  2A7T A;  5AQX A;  2M8B B;  1NGC A;  4AB0 A;  1NGJ A;  5AQO A;  4H5R A;  3CQX A;  1XRS B;  2ASC A;  3QFU A;  2N66 A;  1NGD A;  1L4V A;  2LY6 A;  4UJ0 A;  2LT8 A;  3SF4 D;  5AQW A;  1NGE A;  2E3G A;  1GPT A;  3D2F B;  5FPD A;  1JXC A;  1BUP A;  1UGL A;  1ZYW A;  3LDL A;  1JZB A;  1SNB A;  3GDQ A;  5KK4 A;  2KBJ A;  5AQS A;  2KBH A;  2QWL A;  3FZH A;  5AQG A;  1WWN A;  5AQJ A;  1LQI A;  5AQV A;  4H5W A;  1K8B A;  4AEI A;  2B3C A;  1WT7 A;  3HSC A;  1PTX A;  1SEG A;  1SN4 A;  5FPN A;  1JZA A;  5AQL A;  5FPM A;  3FZL A;  5AQI A;  1ZYV A;  1B7D A;  3QI7 A;  1DQ7 A;  1NGA A;  2QWP A;  5F0X A;  5BN9 A;  2LKB A;  4HHF A;  2QWN A;  5BPM A;  1OMY A;  2KHO A;  1BRZ A;  1YUW A;  4KYP A;  1ZVE A;  2LR3 A;  4UAE F;  2KSK A;  2E0H A;  2V7Z A;  1NH5 A;  1C55 A;  3LDO A;  1VNB A;  1NE5 A;  1P00 A;  3LDQ A;  5EVZ A;  2K35 A;  2GL1 A;  5BPN A;  2QWO A;  2B68 A;  1FH3 A;  2QWR A;  2KPY A;  2BUP A;  1CHZ A;  1HPM A;  1T7B A;  1QQO A;  1S3X A;  2KYQ A;  1QQN A;  2NY8 X;  3A8Y A;  3ATU A;  3E7R L;  4KBO A;  5AQU A;  1KAX A;  5BN8 A;  1DJT A;  1T1T A;  1SN1 A;  2QWM A;  1BA0 A;  2MBK A;  2YIO A;  1T7A A;  2E3F A;  5EX5 A;  1AYJ A;  1DKG D;  1POI A;  5AQF A;  1KV0 A;  2E8A A;  2N2Q A;  4H5N A;  3BK3 C;  5AQP A;  3C7N A;  3KHW A;  5AQT A;  2MN5 A;  3KOZ A;  1C56 A;  1NRA A;  1P0A A;  1N4N A;  5AR0 A;  2KGQ A;  5BPL A;  4FL9 A;  3R2V A;  1I6F A; 
#chains in the Genus database with same CATH homology
 1UGL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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