1ZU3A

Crystal structure of mutant k8a of scorpion alpha-like neurotoxin bmk m1 from buthus martensii karsch
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
64
structure length
64
Chain Sequence
VRDAYIAAPHNCVYECARNEYCNDLCTKNGAKSGYCQWVGKYGNGCWCIELPDNVPIRVPGKCH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural basis for the voltage-gated Na+ channel selectivity of the scorpion alpha-like toxin BmK M1
pubmed doi rcsb
molecule tags Toxin
source organism Mesobuthus martensii
molecule keywords Alpha-like neurotoxin BmK-I
total genus 15
structure length 64
sequence length 64
ec nomenclature
pdb deposition date 2005-05-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00537 Toxin_3 Scorpion toxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1zu3A00
1OZZA 1T7EA 2LY6A 4AEIA 1ZYWA 1C56A 1T7AA 2YC1C 1JZBA 4UJ0A 2LJMA 1T0ZA 4HE7A 1I2VA 1NPIA 1BRZA 1B3CA 2MZ0A 1LQIA 2NY8X 4V1DC 2KJAA 1T1TA 2I61A 2KYQA 2KSKA 1SN1A 1SN4A 1ICAA 1OMYA 2LI7A 2LKBA 1VNAA 1AHOA 2E3FA 2KBKA 1LQHA 1I6GA 1P0AA 2B3CA 2NY9X 1ZFUA 2BRZA 1C55A 1FH3A 2M8BB 2LT8A 1L4VA 1SNBA 1PTXA 4AB0A 5CY0A 2KPYA 1LQQA 2E3GA 1ZVEA 1N4NA 1I2UA 2LJ7A 1ZVGA 1PX9A 3E7UX 2SN3A 2YBRC 1I6FA 4HHFA 3PSMA 2ASCA 2A7TA 2N66A 2N69A 2N2RA 1VNBA 1NH5A 2ATBA 2LY5A 2N2QA 1KV0A 1DJTA 1T7BA 1NE5A 1WT7A 1ZYVA 1AYJA 1BCGA 2GL1A 2KGQA 4KYPA 1MR4A 1ZU3A 1NRAA 5KK4A 1WWNA 1WMTA 2KBJA 1GPSA 1B7DA 1GPTA 2KBHA 1P00A 1MYNA 3E7RL 2B68A 2YEOA 1BK8A 1TI5A 1CHZA 2E0HA 1SEGA 4AAZA 1JZAA 1CN2A 2LR3A 4CQKA 1JKZA 1PE4A 1JXCA 1DQ7A 1NRBA 1ZUTA 1BMRA
chains in the Genus database with same CATH superfamily
1OZZA 5AQKA 1T7EA 1NGCA 2LY6A 3QFPA 4AEIA 1ZYWA 5BPLA 4UADE 3LDPA 1C56A 2QW9A 1T7AA 2MN5A 1NGAA 1JZBA 2YC1C 3I33A 4UJ0A 5F0XA 2G2KA 2QWMA 2E2FA 2LJMA 1T0ZA 4HE7A 1I2VA 3LDQA 5AQJA 3ATVA 1NPIA 1BRZA 5F1XA 1B3CA 3KOZA 2MZ0A 1LQIA 2NY8X 2YILA 5EVZA 3D2FA 5FPDA 4V1DC 3L56A 2KJAA 1NGGA 1NGJA 1T1TA 2MBKA 2I61A 2KYQA 5AQUA 3R2VA 2KSKA 1SN1A 1KAZA 1SN4A 2QWNA 5BN8A 1ICAA 1OMYA 4UAEF 2LI7A 1HJOA 2LN8A 2LKBA 1VNAA 1AHOA 5AQWA 5AQTA 1KAYA 2E3FA 5FPEA 2KBKA 2QWRA 5FPNA 5EY4A 2QWLA 1LQHA 3ATUA 3KHWA 1P0AA 3FZHA 1I6GA 2B3CA 2NY9X 3KOYA 5AQXA 5AQOA 1ZFUA 1HPMA 2BRZA 4KBOA 5AQLA 1C55A 4H5NA 3KP0A 1FH3A 2M8BB 3KP1A 3CQXA 2LT8A 2QXLA 1SNBA 1L4VA 1PTXA 2BUPA 2YIOA 5AQFA 5EX5A 4AB0A 5AQHA 5CY0A 2KHOA 4HWIA 2KPYA 3C7NA 3GKUA 1NGEA 1XRSB 3KC6A 3GDQA 1LQQA 3LDNA 4FL9A 3AY9A 4H5VA 2E3GA 1NGBA 2V7ZA 3BK3C 1ZVEA 1K8BA 1N4NA 2E8AA 2QWQA 4UAFE 1BA1A 1I2UA 1S3XA 1NGDA 1QQOA 1PX9A 1ZVGA 2LJ7A 3SF4D 1POIA 3E7UX 3L6QA 2SN3A 2YBRC 1I6FA 3FE1A 4FSVA 3A8YA 1DKGD 4HHFA 3QMLA 3PSMA 2ASCA 1QQNA 5AQYA 3D2EA 2VY6A 1HX1A 2A7TA 2D56A 2N66A 2N69A 4H5RA 4H5TA 4IO8A 5F2RA 2N2RA 1ATRA 1VNBA 1NH5A 2ATBA 2LY5A 2N2QA 3FZMA 5FPMA 5AQPA 1NGIA 1KV0A 1DJTA 1T7BA 1NE5A 1WT7A 1ZYVA 1AYJA 1BCGA 5AQMA 1UGLA 3FZFA 2GL1A 2KGQA 4GNIA 1QQMA 4KYPA 1MR4A 1ZU3A 1YUWA 1NRAA 5AQNA 3JXUA 5KK4A 5BPMA 1WWNA 1WMTA 5EXWA 2JDQD 2KBJA 2QWPA 3M3ZA 2E88A 3QI7A 5AR0A 3CW4A 3IUCA 1GPSA 1B7DA 3FZLA 5AQIA 3LDLA 2K35A 1GPTA 1NGFA 3D2FB 5AQZA 2KBHA 3LDOA 3C7NB 2YIPA 3HSCA 3KVGA 1P00A 3L4IA 1MYNA 3E7RL 2B68A 2YEOA 1BK8A 1NGHA 1TI5A 5BPNA 3GL1A 3QFUA 1CHZA 2E0HA 2GMOA 1SEGA 4AAZA 1JZAA 5AQQA 1CN2A 5BN9A 2LR3A 4CQKA 1JKZA 1PE4A 1JXCA 1KAXA 1DQ7A 1NRBA 5AQRA 1BUPA 5AQSA 2QWOA 3FZKA 1BA0A 3KOWA 1ZUTA 5AQGA 5AQVA 3KOXA 1BMRA 1ATSA 4H5WA 3D2EB
chains in the Genus database with same CATH topology
1OZZA 1T7EA 2LY6A 4AEIA 1ZYWA 1C56A 1T7AA 2YC1C 1JZBA 4UJ0A 2LJMA 1T0ZA 4HE7A 1I2VA 1NPIA 1BRZA 1B3CA 2MZ0A 1LQIA 2NY8X 4V1DC 2KJAA 1T1TA 2I61A 2KYQA 2KSKA 1SN1A 1SN4A 1ICAA 1OMYA 2LI7A 2LKBA 1VNAA 1AHOA 2E3FA 2KBKA 1LQHA 1I6GA 1P0AA 2B3CA 2NY9X 1ZFUA 2BRZA 1C55A 1FH3A 2M8BB 2LT8A 1L4VA 1SNBA 1PTXA 4AB0A 5CY0A 2KPYA 1LQQA 2E3GA 1ZVEA 1N4NA 1I2UA 2LJ7A 1ZVGA 1PX9A 3E7UX 2SN3A 2YBRC 1I6FA 4HHFA 3PSMA 2ASCA 2A7TA 2N66A 2N69A 2N2RA 1VNBA 1NH5A 2ATBA 2LY5A 2N2QA 1KV0A 1DJTA 1T7BA 1NE5A 1WT7A 1ZYVA 1AYJA 1BCGA 2GL1A 2KGQA 4KYPA 1MR4A 1ZU3A 1NRAA 5KK4A 1WWNA 1WMTA 2KBJA 1GPSA 1B7DA 1GPTA 2KBHA 1P00A 1MYNA 3E7RL 2B68A 2YEOA 1BK8A 1TI5A 1CHZA 2E0HA 1SEGA 4AAZA 1JZAA 1CN2A 2LR3A 4CQKA 1JKZA 1PE4A 1JXCA 1DQ7A 1NRBA 1ZUTA 1BMRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OZZ A;  1T7E A;  2LY6 A;  4AEI A;  1ZYW A;  1C56 A;  1T7A A;  2YC1 C;  1JZB A;  4UJ0 A;  2LJM A;  1T0Z A;  4HE7 A;  1I2V A;  1NPI A;  1BRZ A;  1B3C A;  2MZ0 A;  1LQI A;  2NY8 X;  4V1D C;  2KJA A;  1T1T A;  2I61 A;  2KYQ A;  2KSK A;  1SN1 A;  1SN4 A;  1ICA A;  1OMY A;  2LI7 A;  2LKB A;  1VNA A;  1AHO A;  2E3F A;  2KBK A;  1LQH A;  1I6G A;  1P0A A;  2B3C A;  2NY9 X;  1ZFU A;  2BRZ A;  1C55 A;  1FH3 A;  2M8B B;  2LT8 A;  1L4V A;  1SNB A;  1PTX A;  4AB0 A;  5CY0 A;  2KPY A;  1LQQ A;  2E3G A;  1ZVE A;  1N4N A;  1I2U A;  2LJ7 A;  1ZVG A;  1PX9 A;  3E7U X;  2SN3 A;  2YBR C;  1I6F A;  4HHF A;  3PSM A;  2ASC A;  2A7T A;  2N66 A;  2N69 A;  2N2R A;  1VNB A;  1NH5 A;  2ATB A;  2LY5 A;  2N2Q A;  1KV0 A;  1DJT A;  1T7B A;  1NE5 A;  1WT7 A;  1ZYV A;  1AYJ A;  1BCG A;  2GL1 A;  2KGQ A;  4KYP A;  1MR4 A;  1ZU3 A;  1NRA A;  5KK4 A;  1WWN A;  1WMT A;  2KBJ A;  1GPS A;  1B7D A;  1GPT A;  2KBH A;  1P00 A;  1MYN A;  3E7R L;  2B68 A;  2YEO A;  1BK8 A;  1TI5 A;  1CHZ A;  2E0H A;  1SEG A;  4AAZ A;  1JZA A;  1CN2 A;  2LR3 A;  4CQK A;  1JKZ A;  1PE4 A;  1JXC A;  1DQ7 A;  1NRB A;  1ZUT A;  1BMR A; 
#chains in the Genus database with same CATH topology
 1OZZ A;  5AQK A;  1T7E A;  1NGC A;  2LY6 A;  3QFP A;  4AEI A;  1ZYW A;  5BPL A;  4UAD E;  3LDP A;  1C56 A;  2QW9 A;  1T7A A;  2MN5 A;  1NGA A;  1JZB A;  2YC1 C;  3I33 A;  4UJ0 A;  5F0X A;  2G2K A;  2QWM A;  2E2F A;  2LJM A;  1T0Z A;  4HE7 A;  1I2V A;  3LDQ A;  5AQJ A;  3ATV A;  1NPI A;  1BRZ A;  5F1X A;  1B3C A;  3KOZ A;  2MZ0 A;  1LQI A;  2NY8 X;  2YIL A;  5EVZ A;  3D2F A;  5FPD A;  4V1D C;  3L56 A;  2KJA A;  1NGG A;  1NGJ A;  1T1T A;  2MBK A;  2I61 A;  2KYQ A;  5AQU A;  3R2V A;  2KSK A;  1SN1 A;  1KAZ A;  1SN4 A;  2QWN A;  5BN8 A;  1ICA A;  1OMY A;  4UAE F;  2LI7 A;  1HJO A;  2LN8 A;  2LKB A;  1VNA A;  1AHO A;  5AQW A;  5AQT A;  1KAY A;  2E3F A;  5FPE A;  2KBK A;  2QWR A;  5FPN A;  5EY4 A;  2QWL A;  1LQH A;  3ATU A;  3KHW A;  1P0A A;  3FZH A;  1I6G A;  2B3C A;  2NY9 X;  3KOY A;  5AQX A;  5AQO A;  1ZFU A;  1HPM A;  2BRZ A;  4KBO A;  5AQL A;  1C55 A;  4H5N A;  3KP0 A;  1FH3 A;  2M8B B;  3KP1 A;  3CQX A;  2LT8 A;  2QXL A;  1SNB A;  1L4V A;  1PTX A;  2BUP A;  2YIO A;  5AQF A;  5EX5 A;  4AB0 A;  5AQH A;  5CY0 A;  2KHO A;  4HWI A;  2KPY A;  3C7N A;  3GKU A;  1NGE A;  1XRS B;  3KC6 A;  3GDQ A;  1LQQ A;  3LDN A;  4FL9 A;  3AY9 A;  4H5V A;  2E3G A;  1NGB A;  2V7Z A;  3BK3 C;  1ZVE A;  1K8B A;  1N4N A;  2E8A A;  2QWQ A;  4UAF E;  1BA1 A;  1I2U A;  1S3X A;  1NGD A;  1QQO A;  1PX9 A;  1ZVG A;  2LJ7 A;  3SF4 D;  1POI A;  3E7U X;  3L6Q A;  2SN3 A;  2YBR C;  1I6F A;  3FE1 A;  4FSV A;  3A8Y A;  1DKG D;  4HHF A;  3QML A;  3PSM A;  2ASC A;  1QQN A;  5AQY A;  3D2E A;  2VY6 A;  1HX1 A;  2A7T A;  2D56 A;  2N66 A;  2N69 A;  4H5R A;  4H5T A;  4IO8 A;  5F2R A;  2N2R A;  1ATR A;  1VNB A;  1NH5 A;  2ATB A;  2LY5 A;  2N2Q A;  3FZM A;  5FPM A;  5AQP A;  1NGI A;  1KV0 A;  1DJT A;  1T7B A;  1NE5 A;  1WT7 A;  1ZYV A;  1AYJ A;  1BCG A;  5AQM A;  1UGL A;  3FZF A;  2GL1 A;  2KGQ A;  4GNI A;  1QQM A;  4KYP A;  1MR4 A;  1ZU3 A;  1YUW A;  1NRA A;  5AQN A;  3JXU A;  5KK4 A;  5BPM A;  1WWN A;  1WMT A;  5EXW A;  2JDQ D;  2KBJ A;  2QWP A;  3M3Z A;  2E88 A;  3QI7 A;  5AR0 A;  3CW4 A;  3IUC A;  1GPS A;  1B7D A;  3FZL A;  5AQI A;  3LDL A;  2K35 A;  1GPT A;  1NGF A;  3D2F B;  5AQZ A;  2KBH A;  3LDO A;  3C7N B;  2YIP A;  3HSC A;  3KVG A;  1P00 A;  3L4I A;  1MYN A;  3E7R L;  2B68 A;  2YEO A;  1BK8 A;  1NGH A;  1TI5 A;  5BPN A;  3GL1 A;  3QFU A;  1CHZ A;  2E0H A;  2GMO A;  1SEG A;  4AAZ A;  1JZA A;  5AQQ A;  1CN2 A;  5BN9 A;  2LR3 A;  4CQK A;  1JKZ A;  1PE4 A;  1JXC A;  1KAX A;  1DQ7 A;  1NRB A;  5AQR A;  1BUP A;  5AQS A;  2QWO A;  3FZK A;  1BA0 A;  3KOW A;  1ZUT A;  5AQG A;  5AQV A;  3KOX A;  1BMR A;  1ATS A;  4H5W A;  3D2E B; 
#chains in the Genus database with same CATH homology
 1OZZ A;  1T7E A;  2LY6 A;  4AEI A;  1ZYW A;  1C56 A;  1T7A A;  2YC1 C;  1JZB A;  4UJ0 A;  2LJM A;  1T0Z A;  4HE7 A;  1I2V A;  1NPI A;  1BRZ A;  1B3C A;  2MZ0 A;  1LQI A;  2NY8 X;  4V1D C;  2KJA A;  1T1T A;  2I61 A;  2KYQ A;  2KSK A;  1SN1 A;  1SN4 A;  1ICA A;  1OMY A;  2LI7 A;  2LKB A;  1VNA A;  1AHO A;  2E3F A;  2KBK A;  1LQH A;  1I6G A;  1P0A A;  2B3C A;  2NY9 X;  1ZFU A;  2BRZ A;  1C55 A;  1FH3 A;  2M8B B;  2LT8 A;  1L4V A;  1SNB A;  1PTX A;  4AB0 A;  5CY0 A;  2KPY A;  1LQQ A;  2E3G A;  1ZVE A;  1N4N A;  1I2U A;  2LJ7 A;  1ZVG A;  1PX9 A;  3E7U X;  2SN3 A;  2YBR C;  1I6F A;  4HHF A;  3PSM A;  2ASC A;  2A7T A;  2N66 A;  2N69 A;  2N2R A;  1VNB A;  1NH5 A;  2ATB A;  2LY5 A;  2N2Q A;  1KV0 A;  1DJT A;  1T7B A;  1NE5 A;  1WT7 A;  1ZYV A;  1AYJ A;  1BCG A;  2GL1 A;  2KGQ A;  4KYP A;  1MR4 A;  1ZU3 A;  1NRA A;  5KK4 A;  1WWN A;  1WMT A;  2KBJ A;  1GPS A;  1B7D A;  1GPT A;  2KBH A;  1P00 A;  1MYN A;  3E7R L;  2B68 A;  2YEO A;  1BK8 A;  1TI5 A;  1CHZ A;  2E0H A;  1SEG A;  4AAZ A;  1JZA A;  1CN2 A;  2LR3 A;  4CQK A;  1JKZ A;  1PE4 A;  1JXC A;  1DQ7 A;  1NRB A;  1ZUT A;  1BMR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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