1ZVEA

Crystal structure of mutant k8g of scorpion alpha-like neurotoxin bmk m1 from buthus martensii karsch
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
66
structure length
66
Chain Sequence
NSVRDAYIAGPHNCVYECARNEYCNDLCTKNGAKSGYCQWVGKYGNGCWCIELPDNVPIRVPGKCH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural basis for the voltage-gated Na+ channel selectivity of the scorpion alpha-like toxin BmK M1
pubmed doi rcsb
molecule tags Toxin
source organism Mesobuthus martensii
molecule keywords Alpha-like neurotoxin BmK-I
total genus 17
structure length 66
sequence length 66
ec nomenclature
pdb deposition date 2005-06-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00537 Toxin_3 Scorpion toxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1zveA00
5CY0A 1BK8A 2LJ7A 1OZZA 1KV0A 1LQIA 1B3CA 4AEIA 2LI7A 1GPTA 1NRBA 1JKZA 2E3GA 1SEGA 1VNBA 1ICAA 1DJTA 2KSKA 1P00A 3E7UX 4AAZA 2KBKA 1JZAA 2N2RA 2LY5A 1C56A 1N4NA 2N2QA 2B3CA 4KYPA 2KBJA 2MZ0A 1BMRA 2LKBA 1SN4A 1BCGA 1FH3A 1I2VA 1B7DA 1ZU3A 1PX9A 4CQKA 1WT7A 2YEOA 1TI5A 2ATBA 1SNBA 1C55A 1ZUTA 1I6GA 2NY9X 1NE5A 2GL1A 2KPYA 2KGQA 1LQHA 1MR4A 1T7EA 1MYNA 1T7AA 1ZYVA 1WMTA 4V1DC 2KBHA 2KJAA 1JXCA 2ASCA 2B68A 1ZVGA 2I61A 2N66A 2M8BB 1CHZA 1AYJA 1T0ZA 1ZFUA 2SN3A 1LQQA 1PTXA 1BRZA 2E0HA 2LR3A 1SN1A 1CN2A 4AB0A 4HHFA 1AHOA 1JZBA 1DQ7A 2E3FA 1I2UA 3E7RL 1OMYA 1NRAA 2A7TA 2YC1C 1P0AA 1WWNA 2LT8A 1ZYWA 2BRZA 4HE7A 1ZVEA 1PE4A 1I6FA 4UJ0A 2YBRC 5KK4A 2KYQA 2N69A 1T7BA 1L4VA 2LJMA 1VNAA 2LY6A 2NY8X 1T1TA 1NH5A 1GPSA 1NPIA 3PSMA
chains in the Genus database with same CATH superfamily
1NGIA 4H5TA 1NGAA 5AQPA 2KHOA 3FZKA 5CY0A 1BK8A 2LJ7A 5FPDA 3QFPA 2JDQD 1OZZA 4FL9A 1KV0A 3KVGA 1LQIA 5AQVA 3C7NB 1HPMA 5AQZA 5F0XA 1B3CA 4AEIA 2LI7A 3LDPA 4UAEF 1GPTA 1NRBA 2QWOA 2E3GA 3HSCA 1YUWA 3LDNA 2YIOA 1SEGA 2QWQA 1NGFA 3ATVA 3I33A 3LDQA 1VNBA 1ICAA 5FPNA 1DJTA 2KSKA 3L56A 4GNIA 1P00A 5AQFA 3SF4D 3E7UX 3D2EB 4AAZA 5FPEA 2KBKA 5AQXA 1JZAA 2N2RA 1NGCA 2LY5A 3GKUA 4H5WA 3D2FA 5AQOA 1KAZA 5BN8A 2QXLA 5AQKA 5BPNA 3KOZA 1N4NA 1C56A 2N2QA 3L6QA 1KAYA 2B3CA 3A8YA 4KYPA 2KBJA 2MZ0A 4H5RA 1BMRA 2LKBA 1SN4A 1BCGA 3FZFA 1FH3A 5AQTA 1HX1A 1NGJA 1I2VA 1B7DA 1BA1A 2QWLA 1ZU3A 1NGDA 1PX9A 3FZHA 1XRSB 2MBKA 1WT7A 2QWRA 4CQKA 2YEOA 1TI5A 2ATBA 3GDQA 4FSVA 3D2FB 1SNBA 2QWPA 1S3XA 1ZUTA 4UADE 3QMLA 5AR0A 5AQYA 2NY9X 1C55A 1I6GA 1NE5A 1BUPA 2G2KA 2GL1A 2KPYA 2KGQA 1LQHA 1MR4A 1T7EA 4IO8A 3GL1A 1MYNA 1T7AA 3L4IA 1ATRA 3R2VA 5AQUA 1POIA 1WMTA 1ZYVA 2KBHA 2KJAA 4V1DC 1JXCA 2ASCA 2B68A 3LDOA 1ZVGA 1QQMA 2I61A 2N66A 2E88A 3FZMA 2M8BB 1CHZA 2MN5A 2E2FA 1AYJA 3KOYA 2YILA 5AQRA 1T0ZA 5AQSA 1ZFUA 2SN3A 1LQQA 2VY6A 1PTXA 4KBOA 2E0HA 2LR3A 5AQJA 1BRZA 5EXWA 1SN1A 3IUCA 1CN2A 1KAXA 1QQOA 1QQNA 1NGGA 5AQQA 1ATSA 4AB0A 4HHFA 3KOWA 3M3ZA 4HWIA 5FPMA 1AHOA 1JZBA 5EVZA 1DQ7A 1NGBA 2E3FA 1K8BA 1JKZA 5BN9A 3FE1A 4H5NA 3C7NA 1I2UA 2V7ZA 1OMYA 1NRAA 2A7TA 2YC1C 3E7RL 3JXUA 2BUPA 3KP1A 1P0AA 1WWNA 2LT8A 3CQXA 5AQGA 5AQWA 1ZYWA 1DKGD 3QI7A 2BRZA 5AQLA 4H5VA 1UGLA 5EY4A 3LDLA 4HE7A 1ZVEA 3KHWA 1PE4A 5AQHA 1I6FA 4UAFE 4UJ0A 2K35A 2YBRC 3D2EA 3KP0A 2YIPA 2E8AA 5KK4A 3KOXA 5EX5A 2KYQA 2N69A 3BK3C 1T7BA 3FZLA 1NGEA 3ATUA 1L4VA 2LJMA 5BPLA 1HJOA 3QFUA 5BPMA 1NGHA 3AY9A 2QW9A 1VNAA 5F1XA 2LY6A 2QWNA 3CW4A 2NY8X 5AQIA 1T1TA 3KC6A 2D56A 1NH5A 2QWMA 5AQNA 1GPSA 1NPIA 5AQMA 5F2RA 3PSMA 2LN8A 2GMOA 1BA0A
chains in the Genus database with same CATH topology
5CY0A 1BK8A 2LJ7A 1OZZA 1KV0A 1LQIA 1B3CA 4AEIA 2LI7A 1GPTA 1NRBA 1JKZA 2E3GA 1SEGA 1VNBA 1ICAA 1DJTA 2KSKA 1P00A 3E7UX 4AAZA 2KBKA 1JZAA 2N2RA 2LY5A 1C56A 1N4NA 2N2QA 2B3CA 4KYPA 2KBJA 2MZ0A 1BMRA 2LKBA 1SN4A 1BCGA 1FH3A 1I2VA 1B7DA 1ZU3A 1PX9A 4CQKA 1WT7A 2YEOA 1TI5A 2ATBA 1SNBA 1C55A 1ZUTA 1I6GA 2NY9X 1NE5A 2GL1A 2KPYA 2KGQA 1LQHA 1MR4A 1T7EA 1MYNA 1T7AA 1ZYVA 1WMTA 4V1DC 2KBHA 2KJAA 1JXCA 2ASCA 2B68A 1ZVGA 2I61A 2N66A 2M8BB 1CHZA 1AYJA 1T0ZA 1ZFUA 2SN3A 1LQQA 1PTXA 1BRZA 2E0HA 2LR3A 1SN1A 1CN2A 4AB0A 4HHFA 1AHOA 1JZBA 1DQ7A 2E3FA 1I2UA 3E7RL 1OMYA 1NRAA 2A7TA 2YC1C 1P0AA 1WWNA 2LT8A 1ZYWA 2BRZA 4HE7A 1ZVEA 1PE4A 1I6FA 4UJ0A 2YBRC 5KK4A 2KYQA 2N69A 1T7BA 1L4VA 2LJMA 1VNAA 2LY6A 2NY8X 1T1TA 1NH5A 1GPSA 1NPIA 3PSMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5CY0 A;  1BK8 A;  2LJ7 A;  1OZZ A;  1KV0 A;  1LQI A;  1B3C A;  4AEI A;  2LI7 A;  1GPT A;  1NRB A;  1JKZ A;  2E3G A;  1SEG A;  1VNB A;  1ICA A;  1DJT A;  2KSK A;  1P00 A;  3E7U X;  4AAZ A;  2KBK A;  1JZA A;  2N2R A;  2LY5 A;  1C56 A;  1N4N A;  2N2Q A;  2B3C A;  4KYP A;  2KBJ A;  2MZ0 A;  1BMR A;  2LKB A;  1SN4 A;  1BCG A;  1FH3 A;  1I2V A;  1B7D A;  1ZU3 A;  1PX9 A;  4CQK A;  1WT7 A;  2YEO A;  1TI5 A;  2ATB A;  1SNB A;  1C55 A;  1ZUT A;  1I6G A;  2NY9 X;  1NE5 A;  2GL1 A;  2KPY A;  2KGQ A;  1LQH A;  1MR4 A;  1T7E A;  1MYN A;  1T7A A;  1ZYV A;  1WMT A;  4V1D C;  2KBH A;  2KJA A;  1JXC A;  2ASC A;  2B68 A;  1ZVG A;  2I61 A;  2N66 A;  2M8B B;  1CHZ A;  1AYJ A;  1T0Z A;  1ZFU A;  2SN3 A;  1LQQ A;  1PTX A;  1BRZ A;  2E0H A;  2LR3 A;  1SN1 A;  1CN2 A;  4AB0 A;  4HHF A;  1AHO A;  1JZB A;  1DQ7 A;  2E3F A;  1I2U A;  3E7R L;  1OMY A;  1NRA A;  2A7T A;  2YC1 C;  1P0A A;  1WWN A;  2LT8 A;  1ZYW A;  2BRZ A;  4HE7 A;  1ZVE A;  1PE4 A;  1I6F A;  4UJ0 A;  2YBR C;  5KK4 A;  2KYQ A;  2N69 A;  1T7B A;  1L4V A;  2LJM A;  1VNA A;  2LY6 A;  2NY8 X;  1T1T A;  1NH5 A;  1GPS A;  1NPI A;  3PSM A; 
#chains in the Genus database with same CATH topology
 1NGI A;  4H5T A;  1NGA A;  5AQP A;  2KHO A;  3FZK A;  5CY0 A;  1BK8 A;  2LJ7 A;  5FPD A;  3QFP A;  2JDQ D;  1OZZ A;  4FL9 A;  1KV0 A;  3KVG A;  1LQI A;  5AQV A;  3C7N B;  1HPM A;  5AQZ A;  5F0X A;  1B3C A;  4AEI A;  2LI7 A;  3LDP A;  4UAE F;  1GPT A;  1NRB A;  2QWO A;  2E3G A;  3HSC A;  1YUW A;  3LDN A;  2YIO A;  1SEG A;  2QWQ A;  1NGF A;  3ATV A;  3I33 A;  3LDQ A;  1VNB A;  1ICA A;  5FPN A;  1DJT A;  2KSK A;  3L56 A;  4GNI A;  1P00 A;  5AQF A;  3SF4 D;  3E7U X;  3D2E B;  4AAZ A;  5FPE A;  2KBK A;  5AQX A;  1JZA A;  2N2R A;  1NGC A;  2LY5 A;  3GKU A;  4H5W A;  3D2F A;  5AQO A;  1KAZ A;  5BN8 A;  2QXL A;  5AQK A;  5BPN A;  3KOZ A;  1N4N A;  1C56 A;  2N2Q A;  3L6Q A;  1KAY A;  2B3C A;  3A8Y A;  4KYP A;  2KBJ A;  2MZ0 A;  4H5R A;  1BMR A;  2LKB A;  1SN4 A;  1BCG A;  3FZF A;  1FH3 A;  5AQT A;  1HX1 A;  1NGJ A;  1I2V A;  1B7D A;  1BA1 A;  2QWL A;  1ZU3 A;  1NGD A;  1PX9 A;  3FZH A;  1XRS B;  2MBK A;  1WT7 A;  2QWR A;  4CQK A;  2YEO A;  1TI5 A;  2ATB A;  3GDQ A;  4FSV A;  3D2F B;  1SNB A;  2QWP A;  1S3X A;  1ZUT A;  4UAD E;  3QML A;  5AR0 A;  5AQY A;  2NY9 X;  1C55 A;  1I6G A;  1NE5 A;  1BUP A;  2G2K A;  2GL1 A;  2KPY A;  2KGQ A;  1LQH A;  1MR4 A;  1T7E A;  4IO8 A;  3GL1 A;  1MYN A;  1T7A A;  3L4I A;  1ATR A;  3R2V A;  5AQU A;  1POI A;  1WMT A;  1ZYV A;  2KBH A;  2KJA A;  4V1D C;  1JXC A;  2ASC A;  2B68 A;  3LDO A;  1ZVG A;  1QQM A;  2I61 A;  2N66 A;  2E88 A;  3FZM A;  2M8B B;  1CHZ A;  2MN5 A;  2E2F A;  1AYJ A;  3KOY A;  2YIL A;  5AQR A;  1T0Z A;  5AQS A;  1ZFU A;  2SN3 A;  1LQQ A;  2VY6 A;  1PTX A;  4KBO A;  2E0H A;  2LR3 A;  5AQJ A;  1BRZ A;  5EXW A;  1SN1 A;  3IUC A;  1CN2 A;  1KAX A;  1QQO A;  1QQN A;  1NGG A;  5AQQ A;  1ATS A;  4AB0 A;  4HHF A;  3KOW A;  3M3Z A;  4HWI A;  5FPM A;  1AHO A;  1JZB A;  5EVZ A;  1DQ7 A;  1NGB A;  2E3F A;  1K8B A;  1JKZ A;  5BN9 A;  3FE1 A;  4H5N A;  3C7N A;  1I2U A;  2V7Z A;  1OMY A;  1NRA A;  2A7T A;  2YC1 C;  3E7R L;  3JXU A;  2BUP A;  3KP1 A;  1P0A A;  1WWN A;  2LT8 A;  3CQX A;  5AQG A;  5AQW A;  1ZYW A;  1DKG D;  3QI7 A;  2BRZ A;  5AQL A;  4H5V A;  1UGL A;  5EY4 A;  3LDL A;  4HE7 A;  1ZVE A;  3KHW A;  1PE4 A;  5AQH A;  1I6F A;  4UAF E;  4UJ0 A;  2K35 A;  2YBR C;  3D2E A;  3KP0 A;  2YIP A;  2E8A A;  5KK4 A;  3KOX A;  5EX5 A;  2KYQ A;  2N69 A;  3BK3 C;  1T7B A;  3FZL A;  1NGE A;  3ATU A;  1L4V A;  2LJM A;  5BPL A;  1HJO A;  3QFU A;  5BPM A;  1NGH A;  3AY9 A;  2QW9 A;  1VNA A;  5F1X A;  2LY6 A;  2QWN A;  3CW4 A;  2NY8 X;  5AQI A;  1T1T A;  3KC6 A;  2D56 A;  1NH5 A;  2QWM A;  5AQN A;  1GPS A;  1NPI A;  5AQM A;  5F2R A;  3PSM A;  2LN8 A;  2GMO A;  1BA0 A; 
#chains in the Genus database with same CATH homology
 5CY0 A;  1BK8 A;  2LJ7 A;  1OZZ A;  1KV0 A;  1LQI A;  1B3C A;  4AEI A;  2LI7 A;  1GPT A;  1NRB A;  1JKZ A;  2E3G A;  1SEG A;  1VNB A;  1ICA A;  1DJT A;  2KSK A;  1P00 A;  3E7U X;  4AAZ A;  2KBK A;  1JZA A;  2N2R A;  2LY5 A;  1C56 A;  1N4N A;  2N2Q A;  2B3C A;  4KYP A;  2KBJ A;  2MZ0 A;  1BMR A;  2LKB A;  1SN4 A;  1BCG A;  1FH3 A;  1I2V A;  1B7D A;  1ZU3 A;  1PX9 A;  4CQK A;  1WT7 A;  2YEO A;  1TI5 A;  2ATB A;  1SNB A;  1C55 A;  1ZUT A;  1I6G A;  2NY9 X;  1NE5 A;  2GL1 A;  2KPY A;  2KGQ A;  1LQH A;  1MR4 A;  1T7E A;  1MYN A;  1T7A A;  1ZYV A;  1WMT A;  4V1D C;  2KBH A;  2KJA A;  1JXC A;  2ASC A;  2B68 A;  1ZVG A;  2I61 A;  2N66 A;  2M8B B;  1CHZ A;  1AYJ A;  1T0Z A;  1ZFU A;  2SN3 A;  1LQQ A;  1PTX A;  1BRZ A;  2E0H A;  2LR3 A;  1SN1 A;  1CN2 A;  4AB0 A;  4HHF A;  1AHO A;  1JZB A;  1DQ7 A;  2E3F A;  1I2U A;  3E7R L;  1OMY A;  1NRA A;  2A7T A;  2YC1 C;  1P0A A;  1WWN A;  2LT8 A;  1ZYW A;  2BRZ A;  4HE7 A;  1ZVE A;  1PE4 A;  1I6F A;  4UJ0 A;  2YBR C;  5KK4 A;  2KYQ A;  2N69 A;  1T7B A;  1L4V A;  2LJM A;  1VNA A;  2LY6 A;  2NY8 X;  1T1T A;  1NH5 A;  1GPS A;  1NPI A;  3PSM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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