1ZVGA

Crystal structure of mutant k8dp9s of scorpion alpha-like neurotoxin bmk m1 from buthus martensii karsch
Total Genus 17

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
66
structure length
66
Chain Sequence
NSVRDAYIADSHNCVYECARNEYCNDLCTKNGAKSGYCQWVGKYGNGCWCIELPDNVPIRVPGKCH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
Updating...
connected with : NaN
molecule tags Toxin
source organism Mesobuthus martensii
publication title Structural basis for the voltage-gated Na+ channel selectivity of the scorpion alpha-like toxin BmK M1
pubmed doi rcsb
molecule keywords Alpha-like neurotoxin BmK-I
total genus 17
structure length 66
sequence length 66
ec nomenclature
pdb deposition date 2005-06-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00537 Toxin_3 Scorpion toxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1zvgA00
2ASCA 2LJ7A 1PE4A 5KK4A 1N4NA 2I61A 1I2VA 2E3FA 1NRAA 2GL1A 2KGQA 1GPSA 3E7UX 1P0AA 2SN3A 1AHOA 1ICAA 1NE5A 4HHFA 3PSMA 2YC1C 1LQQA 1WWNA 1SEGA 1ZUTA 4CQKA 1VNBA 1ZYVA 1LQIA 2N66A 2KBHA 2N2QA 1JZBA 1B3CA 5CY0A 2KPYA 1C56A 2YEOA 2MZ0A 1OMYA 1ZVEA 1BK8A 1JXCA 2B68A 1NPIA 2BRZA 1T7AA 1VNAA 2KBJA 1BRZA 1L4VA 2LY5A 1DQ7A 2LY6A 1JKZA 1PX9A 1ZVGA 2B3CA 4AEIA 4V1DC 2M8BB 2LKBA 4HE7A 1DJTA 1I6GA 1FH3A 1I2UA 2KYQA 1KV0A 1T7BA 1OZZA 1I6FA 1PTXA 2LJMA 1WT7A 1BMRA 1CN2A 1WMTA 1B7DA 4AAZA 2LI7A 1TI5A 1SN1A 1T7EA 2ATBA 2E0HA 1SNBA 1BCGA 1MYNA 1MR4A 1SN4A 2NY9X 1ZYWA 2N69A 1T0ZA 1ZFUA 2LT8A 4UJ0A 1P00A 1T1TA 2YBRC 4AB0A 2E3GA 2NY8X 2KJAA 1JZAA 2N2RA 1C55A 1LQHA 1AYJA 1GPTA 2A7TA 1NH5A 3E7RL 2LR3A 1CHZA 1NRBA 4KYPA 1ZU3A 2KBKA 2KSKA
chains in the Genus database with same CATH superfamily
1QQOA 2KHOA 2ASCA 3L6QA 4H5RA 2LJ7A 1PE4A 5KK4A 1N4NA 1QQMA 2I61A 1NGDA 2E88A 3I33A 2E3FA 1NRAA 3KOZA 2GL1A 2VY6A 2KGQA 3KHWA 1I2VA 1GPSA 3E7UX 1P0AA 2SN3A 3HSCA 1AHOA 1ICAA 1NGCA 3C7NA 1NE5A 4HHFA 3PSMA 4H5TA 2GMOA 5BPMA 1HX1A 3GDQA 3M3ZA 2YC1C 5F2RA 1LQQA 1WWNA 2V7ZA 1SEGA 1ZUTA 1NGBA 4CQKA 1VNBA 1ZYVA 3C7NB 1LQIA 2E2FA 2LN8A 2N66A 2QWPA 5BN9A 4UAEF 2KBHA 2MN5A 1QQNA 1JZBA 2N2QA 1B3CA 1KAXA 2JDQD 3AY9A 2KPYA 1C56A 2YEOA 5CY0A 3BK3C 4FSVA 2MZ0A 4H5VA 1NGGA 4UAFE 5BN8A 1OMYA 5AQTA 5AQNA 5AQVA 1ZVEA 3CQXA 3FZLA 2QWMA 3KC6A 3QFUA 1BK8A 1JXCA 5AQIA 5AQWA 1ATSA 2B68A 1NPIA 1BA0A 2BRZA 4FL9A 4H5WA 1T7AA 3GKUA 1VNAA 1BA1A 2KBJA 3ATVA 1BRZA 1L4VA 5AQGA 2LY5A 1DQ7A 1KAYA 2LY6A 1BUPA 1JKZA 2QWLA 2QXLA 5AQKA 3FZKA 5AQJA 1PX9A 5AQUA 5AQMA 2E8AA 5FPMA 1ZVGA 2B3CA 5AQOA 3KOWA 5BPLA 3ATUA 4AEIA 4V1DC 5EVZA 1KAZA 1NGIA 2M8BB 2LKBA 3LDNA 1DJTA 4HE7A 5AQLA 1I6GA 3LDQA 3LDOA 2QW9A 5EX5A 5AQRA 1FH3A 1I2UA 3LDPA 3FE1A 3D2EA 5AQZA 2QWQA 2K35A 3D2FA 2QWRA 3FZFA 1K8BA 2KYQA 3KOXA 3QFPA 5AQPA 1KV0A 1T7BA 2MBKA 1OZZA 1I6FA 1PTXA 2D56A 2LJMA 1WT7A 2BUPA 4KBOA 3D2EB 3KP0A 4GNIA 3D2FB 1BMRA 1WMTA 5AQSA 1CN2A 1B7DA 1NGJA 4AAZA 1NGHA 2LI7A 1TI5A 1UGLA 2QWOA 5AQYA 3QMLA 5FPEA 1DKGD 1SN1A 2YILA 1T7EA 2ATBA 2E0HA 3KOYA 5F1XA 2YIOA 5FPNA 1SNBA 3L56A 5AQHA 1BCGA 1MYNA 3FZHA 3JXUA 2QWNA 1MR4A 1SN4A 2NY9X 1ZYWA 5EXWA 1ATRA 1POIA 2N69A 3A8YA 5FPDA 1YUWA 1T0ZA 1ZFUA 2G2KA 3R2VA 5F0XA 4IO8A 2LT8A 3KP1A 4UJ0A 1NGFA 3LDLA 1NGEA 1P00A 5AQXA 3CW4A 3GL1A 1T1TA 2YBRC 4AB0A 2E3GA 2NY8X 5AR0A 3IUCA 4HWIA 2KJAA 3FZMA 1HJOA 1XRSB 1JZAA 3KVGA 4UADE 2YIPA 2N2RA 3L4IA 1LQHA 1C55A 1AYJA 1NGAA 5AQFA 1S3XA 3SF4D 1GPTA 3QI7A 5BPNA 2A7TA 5EY4A 1HPMA 1NH5A 3E7RL 2LR3A 4H5NA 1CHZA 1NRBA 4KYPA 1ZU3A 2KBKA 5AQQA 2KSKA
chains in the Genus database with same CATH topology
2ASCA 2LJ7A 1PE4A 5KK4A 1N4NA 2I61A 1I2VA 2E3FA 1NRAA 2GL1A 2KGQA 1GPSA 3E7UX 1P0AA 2SN3A 1AHOA 1ICAA 1NE5A 4HHFA 3PSMA 2YC1C 1LQQA 1WWNA 1SEGA 1ZUTA 4CQKA 1VNBA 1ZYVA 1LQIA 2N66A 2KBHA 2N2QA 1JZBA 1B3CA 5CY0A 2KPYA 1C56A 2YEOA 2MZ0A 1OMYA 1ZVEA 1BK8A 1JXCA 2B68A 1NPIA 2BRZA 1T7AA 1VNAA 2KBJA 1BRZA 1L4VA 2LY5A 1DQ7A 2LY6A 1JKZA 1PX9A 1ZVGA 2B3CA 4AEIA 4V1DC 2M8BB 2LKBA 4HE7A 1DJTA 1I6GA 1FH3A 1I2UA 2KYQA 1KV0A 1T7BA 1OZZA 1I6FA 1PTXA 2LJMA 1WT7A 1BMRA 1CN2A 1WMTA 1B7DA 4AAZA 2LI7A 1TI5A 1SN1A 1T7EA 2ATBA 2E0HA 1SNBA 1BCGA 1MYNA 1MR4A 1SN4A 2NY9X 1ZYWA 2N69A 1T0ZA 1ZFUA 2LT8A 4UJ0A 1P00A 1T1TA 2YBRC 4AB0A 2E3GA 2NY8X 2KJAA 1JZAA 2N2RA 1C55A 1LQHA 1AYJA 1GPTA 2A7TA 1NH5A 3E7RL 2LR3A 1CHZA 1NRBA 4KYPA 1ZU3A 2KBKA 2KSKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ASC A;  2LJ7 A;  1PE4 A;  5KK4 A;  1N4N A;  2I61 A;  1I2V A;  2E3F A;  1NRA A;  2GL1 A;  2KGQ A;  1GPS A;  3E7U X;  1P0A A;  2SN3 A;  1AHO A;  1ICA A;  1NE5 A;  4HHF A;  3PSM A;  2YC1 C;  1LQQ A;  1WWN A;  1SEG A;  1ZUT A;  4CQK A;  1VNB A;  1ZYV A;  1LQI A;  2N66 A;  2KBH A;  2N2Q A;  1JZB A;  1B3C A;  5CY0 A;  2KPY A;  1C56 A;  2YEO A;  2MZ0 A;  1OMY A;  1ZVE A;  1BK8 A;  1JXC A;  2B68 A;  1NPI A;  2BRZ A;  1T7A A;  1VNA A;  2KBJ A;  1BRZ A;  1L4V A;  2LY5 A;  1DQ7 A;  2LY6 A;  1JKZ A;  1PX9 A;  1ZVG A;  2B3C A;  4AEI A;  4V1D C;  2M8B B;  2LKB A;  4HE7 A;  1DJT A;  1I6G A;  1FH3 A;  1I2U A;  2KYQ A;  1KV0 A;  1T7B A;  1OZZ A;  1I6F A;  1PTX A;  2LJM A;  1WT7 A;  1BMR A;  1CN2 A;  1WMT A;  1B7D A;  4AAZ A;  2LI7 A;  1TI5 A;  1SN1 A;  1T7E A;  2ATB A;  2E0H A;  1SNB A;  1BCG A;  1MYN A;  1MR4 A;  1SN4 A;  2NY9 X;  1ZYW A;  2N69 A;  1T0Z A;  1ZFU A;  2LT8 A;  4UJ0 A;  1P00 A;  1T1T A;  2YBR C;  4AB0 A;  2E3G A;  2NY8 X;  2KJA A;  1JZA A;  2N2R A;  1C55 A;  1LQH A;  1AYJ A;  1GPT A;  2A7T A;  1NH5 A;  3E7R L;  2LR3 A;  1CHZ A;  1NRB A;  4KYP A;  1ZU3 A;  2KBK A;  2KSK A; 
#chains in the Genus database with same CATH topology
 1QQO A;  2KHO A;  2ASC A;  3L6Q A;  4H5R A;  2LJ7 A;  1PE4 A;  5KK4 A;  1N4N A;  1QQM A;  2I61 A;  1NGD A;  2E88 A;  3I33 A;  2E3F A;  1NRA A;  3KOZ A;  2GL1 A;  2VY6 A;  2KGQ A;  3KHW A;  1I2V A;  1GPS A;  3E7U X;  1P0A A;  2SN3 A;  3HSC A;  1AHO A;  1ICA A;  1NGC A;  3C7N A;  1NE5 A;  4HHF A;  3PSM A;  4H5T A;  2GMO A;  5BPM A;  1HX1 A;  3GDQ A;  3M3Z A;  2YC1 C;  5F2R A;  1LQQ A;  1WWN A;  2V7Z A;  1SEG A;  1ZUT A;  1NGB A;  4CQK A;  1VNB A;  1ZYV A;  3C7N B;  1LQI A;  2E2F A;  2LN8 A;  2N66 A;  2QWP A;  5BN9 A;  4UAE F;  2KBH A;  2MN5 A;  1QQN A;  1JZB A;  2N2Q A;  1B3C A;  1KAX A;  2JDQ D;  3AY9 A;  2KPY A;  1C56 A;  2YEO A;  5CY0 A;  3BK3 C;  4FSV A;  2MZ0 A;  4H5V A;  1NGG A;  4UAF E;  5BN8 A;  1OMY A;  5AQT A;  5AQN A;  5AQV A;  1ZVE A;  3CQX A;  3FZL A;  2QWM A;  3KC6 A;  3QFU A;  1BK8 A;  1JXC A;  5AQI A;  5AQW A;  1ATS A;  2B68 A;  1NPI A;  1BA0 A;  2BRZ A;  4FL9 A;  4H5W A;  1T7A A;  3GKU A;  1VNA A;  1BA1 A;  2KBJ A;  3ATV A;  1BRZ A;  1L4V A;  5AQG A;  2LY5 A;  1DQ7 A;  1KAY A;  2LY6 A;  1BUP A;  1JKZ A;  2QWL A;  2QXL A;  5AQK A;  3FZK A;  5AQJ A;  1PX9 A;  5AQU A;  5AQM A;  2E8A A;  5FPM A;  1ZVG A;  2B3C A;  5AQO A;  3KOW A;  5BPL A;  3ATU A;  4AEI A;  4V1D C;  5EVZ A;  1KAZ A;  1NGI A;  2M8B B;  2LKB A;  3LDN A;  1DJT A;  4HE7 A;  5AQL A;  1I6G A;  3LDQ A;  3LDO A;  2QW9 A;  5EX5 A;  5AQR A;  1FH3 A;  1I2U A;  3LDP A;  3FE1 A;  3D2E A;  5AQZ A;  2QWQ A;  2K35 A;  3D2F A;  2QWR A;  3FZF A;  1K8B A;  2KYQ A;  3KOX A;  3QFP A;  5AQP A;  1KV0 A;  1T7B A;  2MBK A;  1OZZ A;  1I6F A;  1PTX A;  2D56 A;  2LJM A;  1WT7 A;  2BUP A;  4KBO A;  3D2E B;  3KP0 A;  4GNI A;  3D2F B;  1BMR A;  1WMT A;  5AQS A;  1CN2 A;  1B7D A;  1NGJ A;  4AAZ A;  1NGH A;  2LI7 A;  1TI5 A;  1UGL A;  2QWO A;  5AQY A;  3QML A;  5FPE A;  1DKG D;  1SN1 A;  2YIL A;  1T7E A;  2ATB A;  2E0H A;  3KOY A;  5F1X A;  2YIO A;  5FPN A;  1SNB A;  3L56 A;  5AQH A;  1BCG A;  1MYN A;  3FZH A;  3JXU A;  2QWN A;  1MR4 A;  1SN4 A;  2NY9 X;  1ZYW A;  5EXW A;  1ATR A;  1POI A;  2N69 A;  3A8Y A;  5FPD A;  1YUW A;  1T0Z A;  1ZFU A;  2G2K A;  3R2V A;  5F0X A;  4IO8 A;  2LT8 A;  3KP1 A;  4UJ0 A;  1NGF A;  3LDL A;  1NGE A;  1P00 A;  5AQX A;  3CW4 A;  3GL1 A;  1T1T A;  2YBR C;  4AB0 A;  2E3G A;  2NY8 X;  5AR0 A;  3IUC A;  4HWI A;  2KJA A;  3FZM A;  1HJO A;  1XRS B;  1JZA A;  3KVG A;  4UAD E;  2YIP A;  2N2R A;  3L4I A;  1LQH A;  1C55 A;  1AYJ A;  1NGA A;  5AQF A;  1S3X A;  3SF4 D;  1GPT A;  3QI7 A;  5BPN A;  2A7T A;  5EY4 A;  1HPM A;  1NH5 A;  3E7R L;  2LR3 A;  4H5N A;  1CHZ A;  1NRB A;  4KYP A;  1ZU3 A;  2KBK A;  5AQQ A;  2KSK A; 
#chains in the Genus database with same CATH homology
 2ASC A;  2LJ7 A;  1PE4 A;  5KK4 A;  1N4N A;  2I61 A;  1I2V A;  2E3F A;  1NRA A;  2GL1 A;  2KGQ A;  1GPS A;  3E7U X;  1P0A A;  2SN3 A;  1AHO A;  1ICA A;  1NE5 A;  4HHF A;  3PSM A;  2YC1 C;  1LQQ A;  1WWN A;  1SEG A;  1ZUT A;  4CQK A;  1VNB A;  1ZYV A;  1LQI A;  2N66 A;  2KBH A;  2N2Q A;  1JZB A;  1B3C A;  5CY0 A;  2KPY A;  1C56 A;  2YEO A;  2MZ0 A;  1OMY A;  1ZVE A;  1BK8 A;  1JXC A;  2B68 A;  1NPI A;  2BRZ A;  1T7A A;  1VNA A;  2KBJ A;  1BRZ A;  1L4V A;  2LY5 A;  1DQ7 A;  2LY6 A;  1JKZ A;  1PX9 A;  1ZVG A;  2B3C A;  4AEI A;  4V1D C;  2M8B B;  2LKB A;  4HE7 A;  1DJT A;  1I6G A;  1FH3 A;  1I2U A;  2KYQ A;  1KV0 A;  1T7B A;  1OZZ A;  1I6F A;  1PTX A;  2LJM A;  1WT7 A;  1BMR A;  1CN2 A;  1WMT A;  1B7D A;  4AAZ A;  2LI7 A;  1TI5 A;  1SN1 A;  1T7E A;  2ATB A;  2E0H A;  1SNB A;  1BCG A;  1MYN A;  1MR4 A;  1SN4 A;  2NY9 X;  1ZYW A;  2N69 A;  1T0Z A;  1ZFU A;  2LT8 A;  4UJ0 A;  1P00 A;  1T1T A;  2YBR C;  4AB0 A;  2E3G A;  2NY8 X;  2KJA A;  1JZA A;  2N2R A;  1C55 A;  1LQH A;  1AYJ A;  1GPT A;  2A7T A;  1NH5 A;  3E7R L;  2LR3 A;  1CHZ A;  1NRB A;  4KYP A;  1ZU3 A;  2KBK A;  2KSK A; 
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similar chains in the pdb database (?% sequence similarity)

 
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