1ZVGA

Crystal structure of mutant k8dp9s of scorpion alpha-like neurotoxin bmk m1 from buthus martensii karsch
Total Genus 17

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
66
structure length
66
Chain Sequence
NSVRDAYIADSHNCVYECARNEYCNDLCTKNGAKSGYCQWVGKYGNGCWCIELPDNVPIRVPGKCH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (3-7)TI3 (54-57)O1 (14-65)S2 (9-10)TVIII1 (55-58)S3 (14-15)TI1 (10-13)AH1 (21-31)S5 (47-54)TI2 (42-45)TIV1 (39-42)S4 (35-39)Updating...
connected with : NaN
molecule tags Toxin
source organism Mesobuthus martensii
publication title Structural basis for the voltage-gated Na+ channel selectivity of the scorpion alpha-like toxin BmK M1
pubmed doi rcsb
molecule keywords Alpha-like neurotoxin BmK-I
total genus 17
structure length 66
sequence length 66
ec nomenclature
pdb deposition date 2005-06-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00537 Toxin_3 Scorpion toxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1zvgA00
1MYNA 1I6GA 1ZUTA 1GPTA 3E7UX 1WT7A 1AYJA 1OZZA 1C55A 2B3CA 2NY8X 1T7EA 3PSMA 1MR4A 1SN4A 2KBHA 2E3GA 1VNBA 2BRZA 2LI7A 2E0HA 1FH3A 2N66A 1NPIA 1ZFUA 1T7AA 1VNAA 1ICAA 2N2RA 1NH5A 1T0ZA 1AHOA 1BMRA 1LQHA 1WMTA 4AEIA 4UJ0A 2KSKA 4HE7A 2I61A 1LQIA 2YEOA 2LR3A 2LY6A 1NRBA 1ZVEA 1JZBA 1DJTA 2NY9X 2ASCA 2M8BB 1TI5A 2KJAA 1ZVGA 2B68A 1PX9A 1T7BA 1PE4A 2SN3A 4AB0A 2N69A 1P00A 4CQKA 1CN2A 2LJ7A 2KPYA 2KBJA 2YBRC 4AAZA 5KK4A 1JZAA 2N2QA 1I2VA 1SEGA 1I2UA 1PTXA 1B3CA 2LT8A 1WWNA 2E3FA 1BCGA 1I6FA 2LKBA 2A7TA 2KYQA 1T1TA 5CY0A 1DQ7A 1P0AA 1BRZA 2LJMA 1NE5A 1GPSA 1L4VA 2KBKA 2LY5A 1N4NA 4V1DC 2MZ0A 1C56A 2ATBA 3E7RL 1ZYWA 1JXCA 1BK8A 1OMYA 2KGQA 4HHFA 1KV0A 1ZYVA 1B7DA 1ZU3A 1SNBA 2GL1A 1NRAA 1JKZA 2YC1C 1CHZA 4KYPA 1SN1A 1LQQA
chains in the Genus database with same CATH superfamily
3D2FB 3IUCA 1MYNA 3FZKA 1UGLA 1ZUTA 3ATUA 3KC6A 1I6GA 1KAXA 3KP1A 1QQNA 1WT7A 3E7UX 1OZZA 1AYJA 1GPTA 2LN8A 1C55A 5FPEA 2V7ZA 4FL9A 3JXUA 2B3CA 5FPDA 2NY8X 3LDOA 4UAFE 5AQQA 1T7EA 4H5VA 3PSMA 1MR4A 1NGGA 1SN4A 3R2VA 2KBHA 5AQJA 4GNIA 2E3GA 1VNBA 4HWIA 2BRZA 2QXLA 3KOWA 5AQPA 2LI7A 2E0HA 2E2FA 2KHOA 4UAEF 2N66A 5AQHA 5BN8A 1FH3A 1NPIA 5AQLA 1ZFUA 3KOXA 3ATVA 5AQSA 1T7AA 1VNAA 1ICAA 5AQRA 1HPMA 1QQMA 5FPMA 5BPNA 1KAZA 2N2RA 5F0XA 3CW4A 2QWLA 3L4IA 1NH5A 1T0ZA 1AHOA 1BMRA 1LQHA 2YIPA 1WMTA 5EVZA 4AEIA 3BK3C 4UJ0A 4IO8A 2E88A 3SF4D 4H5NA 5AQIA 1DKGD 2QW9A 5AQFA 2KSKA 4HE7A 5AQOA 5AQVA 4FSVA 3C7NB 2I61A 1LQIA 3QFPA 5AQNA 5EY4A 3CQXA 5F2RA 3I33A 2YEOA 2LR3A 3KHWA 3A8YA 2G2KA 2VY6A 2LY6A 3KOZA 3D2EB 3LDPA 1NRBA 1ZVEA 1JZBA 1NGBA 2MN5A 1DJTA 2NY9X 1NGFA 2ASCA 2M8BB 3FZHA 1TI5A 2KJAA 5BN9A 1ZVGA 2BUPA 2B68A 2QWQA 1NGJA 3FZLA 1PX9A 1T7BA 3D2FA 1NGAA 3L56A 5BPMA 5AQXA 1PE4A 3AY9A 2QWRA 1NGEA 3QI7A 2SN3A 4AB0A 5F1XA 5AQMA 2N69A 1P00A 3HSCA 4CQKA 1CN2A 2LJ7A 2KPYA 4H5WA 2KBJA 2YBRC 3QFUA 4AAZA 5KK4A 2JDQD 1NGCA 1JZAA 2K35A 2N2QA 4H5TA 1I2VA 1QQOA 1SEGA 3LDQA 1I2UA 1PTXA 1B3CA 2QWOA 2LT8A 2MBKA 3QMLA 1WWNA 2E3FA 1BCGA 1I6FA 2LKBA 5AQKA 5AQWA 2A7TA 1NGIA 2KYQA 1NGDA 3KVGA 1S3XA 1T1TA 2E8AA 3GDQA 1DQ7A 1P0AA 3GKUA 5FPNA 5CY0A 1BRZA 3FZMA 4UADE 2LJMA 1ATSA 1HX1A 3KP0A 1NE5A 3GL1A 3FE1A 1GPSA 1L4VA 1BUPA 1NGHA 2D56A 2KBKA 2LY5A 2YIOA 5AQUA 1N4NA 2QWMA 4V1DC 5EX5A 2MZ0A 5AQTA 5BPLA 1HJOA 4KBOA 1C56A 3L6QA 2ATBA 3C7NA 3E7RL 5AQZA 1ZYWA 1JXCA 1BK8A 1OMYA 1POIA 5AR0A 2KGQA 4HHFA 2YILA 3LDNA 1KV0A 1ZYVA 1B7DA 3D2EA 3FZFA 3LDLA 3M3ZA 1K8BA 1ATRA 1ZU3A 1KAYA 1SNBA 2GL1A 4H5RA 2QWNA 1NRAA 1XRSB 5EXWA 1JKZA 2YC1C 1CHZA 2GMOA 4KYPA 5AQGA 5AQYA 3KOYA 1YUWA 2QWPA 1SN1A 1BA1A 1BA0A 1LQQA
chains in the Genus database with same CATH topology
1MYNA 1I6GA 1ZUTA 1GPTA 3E7UX 1WT7A 1AYJA 1OZZA 1C55A 2B3CA 2NY8X 1T7EA 3PSMA 1MR4A 1SN4A 2KBHA 2E3GA 1VNBA 2BRZA 2LI7A 2E0HA 1FH3A 2N66A 1NPIA 1ZFUA 1T7AA 1VNAA 1ICAA 2N2RA 1NH5A 1T0ZA 1AHOA 1BMRA 1LQHA 1WMTA 4AEIA 4UJ0A 2KSKA 4HE7A 2I61A 1LQIA 2YEOA 2LR3A 2LY6A 1NRBA 1ZVEA 1JZBA 1DJTA 2NY9X 2ASCA 2M8BB 1TI5A 2KJAA 1ZVGA 2B68A 1PX9A 1T7BA 1PE4A 2SN3A 4AB0A 2N69A 1P00A 4CQKA 1CN2A 2LJ7A 2KPYA 2KBJA 2YBRC 4AAZA 5KK4A 1JZAA 2N2QA 1I2VA 1SEGA 1I2UA 1PTXA 1B3CA 2LT8A 1WWNA 2E3FA 1BCGA 1I6FA 2LKBA 2A7TA 2KYQA 1T1TA 5CY0A 1DQ7A 1P0AA 1BRZA 2LJMA 1NE5A 1GPSA 1L4VA 2KBKA 2LY5A 1N4NA 4V1DC 2MZ0A 1C56A 2ATBA 3E7RL 1ZYWA 1JXCA 1BK8A 1OMYA 2KGQA 4HHFA 1KV0A 1ZYVA 1B7DA 1ZU3A 1SNBA 2GL1A 1NRAA 1JKZA 2YC1C 1CHZA 4KYPA 1SN1A 1LQQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MYN A;  1I6G A;  1ZUT A;  1GPT A;  3E7U X;  1WT7 A;  1AYJ A;  1OZZ A;  1C55 A;  2B3C A;  2NY8 X;  1T7E A;  3PSM A;  1MR4 A;  1SN4 A;  2KBH A;  2E3G A;  1VNB A;  2BRZ A;  2LI7 A;  2E0H A;  1FH3 A;  2N66 A;  1NPI A;  1ZFU A;  1T7A A;  1VNA A;  1ICA A;  2N2R A;  1NH5 A;  1T0Z A;  1AHO A;  1BMR A;  1LQH A;  1WMT A;  4AEI A;  4UJ0 A;  2KSK A;  4HE7 A;  2I61 A;  1LQI A;  2YEO A;  2LR3 A;  2LY6 A;  1NRB A;  1ZVE A;  1JZB A;  1DJT A;  2NY9 X;  2ASC A;  2M8B B;  1TI5 A;  2KJA A;  1ZVG A;  2B68 A;  1PX9 A;  1T7B A;  1PE4 A;  2SN3 A;  4AB0 A;  2N69 A;  1P00 A;  4CQK A;  1CN2 A;  2LJ7 A;  2KPY A;  2KBJ A;  2YBR C;  4AAZ A;  5KK4 A;  1JZA A;  2N2Q A;  1I2V A;  1SEG A;  1I2U A;  1PTX A;  1B3C A;  2LT8 A;  1WWN A;  2E3F A;  1BCG A;  1I6F A;  2LKB A;  2A7T A;  2KYQ A;  1T1T A;  5CY0 A;  1DQ7 A;  1P0A A;  1BRZ A;  2LJM A;  1NE5 A;  1GPS A;  1L4V A;  2KBK A;  2LY5 A;  1N4N A;  4V1D C;  2MZ0 A;  1C56 A;  2ATB A;  3E7R L;  1ZYW A;  1JXC A;  1BK8 A;  1OMY A;  2KGQ A;  4HHF A;  1KV0 A;  1ZYV A;  1B7D A;  1ZU3 A;  1SNB A;  2GL1 A;  1NRA A;  1JKZ A;  2YC1 C;  1CHZ A;  4KYP A;  1SN1 A;  1LQQ A; 
#chains in the Genus database with same CATH topology
 3D2F B;  3IUC A;  1MYN A;  3FZK A;  1UGL A;  1ZUT A;  3ATU A;  3KC6 A;  1I6G A;  1KAX A;  3KP1 A;  1QQN A;  1WT7 A;  3E7U X;  1OZZ A;  1AYJ A;  1GPT A;  2LN8 A;  1C55 A;  5FPE A;  2V7Z A;  4FL9 A;  3JXU A;  2B3C A;  5FPD A;  2NY8 X;  3LDO A;  4UAF E;  5AQQ A;  1T7E A;  4H5V A;  3PSM A;  1MR4 A;  1NGG A;  1SN4 A;  3R2V A;  2KBH A;  5AQJ A;  4GNI A;  2E3G A;  1VNB A;  4HWI A;  2BRZ A;  2QXL A;  3KOW A;  5AQP A;  2LI7 A;  2E0H A;  2E2F A;  2KHO A;  4UAE F;  2N66 A;  5AQH A;  5BN8 A;  1FH3 A;  1NPI A;  5AQL A;  1ZFU A;  3KOX A;  3ATV A;  5AQS A;  1T7A A;  1VNA A;  1ICA A;  5AQR A;  1HPM A;  1QQM A;  5FPM A;  5BPN A;  1KAZ A;  2N2R A;  5F0X A;  3CW4 A;  2QWL A;  3L4I A;  1NH5 A;  1T0Z A;  1AHO A;  1BMR A;  1LQH A;  2YIP A;  1WMT A;  5EVZ A;  4AEI A;  3BK3 C;  4UJ0 A;  4IO8 A;  2E88 A;  3SF4 D;  4H5N A;  5AQI A;  1DKG D;  2QW9 A;  5AQF A;  2KSK A;  4HE7 A;  5AQO A;  5AQV A;  4FSV A;  3C7N B;  2I61 A;  1LQI A;  3QFP A;  5AQN A;  5EY4 A;  3CQX A;  5F2R A;  3I33 A;  2YEO A;  2LR3 A;  3KHW A;  3A8Y A;  2G2K A;  2VY6 A;  2LY6 A;  3KOZ A;  3D2E B;  3LDP A;  1NRB A;  1ZVE A;  1JZB A;  1NGB A;  2MN5 A;  1DJT A;  2NY9 X;  1NGF A;  2ASC A;  2M8B B;  3FZH A;  1TI5 A;  2KJA A;  5BN9 A;  1ZVG A;  2BUP A;  2B68 A;  2QWQ A;  1NGJ A;  3FZL A;  1PX9 A;  1T7B A;  3D2F A;  1NGA A;  3L56 A;  5BPM A;  5AQX A;  1PE4 A;  3AY9 A;  2QWR A;  1NGE A;  3QI7 A;  2SN3 A;  4AB0 A;  5F1X A;  5AQM A;  2N69 A;  1P00 A;  3HSC A;  4CQK A;  1CN2 A;  2LJ7 A;  2KPY A;  4H5W A;  2KBJ A;  2YBR C;  3QFU A;  4AAZ A;  5KK4 A;  2JDQ D;  1NGC A;  1JZA A;  2K35 A;  2N2Q A;  4H5T A;  1I2V A;  1QQO A;  1SEG A;  3LDQ A;  1I2U A;  1PTX A;  1B3C A;  2QWO A;  2LT8 A;  2MBK A;  3QML A;  1WWN A;  2E3F A;  1BCG A;  1I6F A;  2LKB A;  5AQK A;  5AQW A;  2A7T A;  1NGI A;  2KYQ A;  1NGD A;  3KVG A;  1S3X A;  1T1T A;  2E8A A;  3GDQ A;  1DQ7 A;  1P0A A;  3GKU A;  5FPN A;  5CY0 A;  1BRZ A;  3FZM A;  4UAD E;  2LJM A;  1ATS A;  1HX1 A;  3KP0 A;  1NE5 A;  3GL1 A;  3FE1 A;  1GPS A;  1L4V A;  1BUP A;  1NGH A;  2D56 A;  2KBK A;  2LY5 A;  2YIO A;  5AQU A;  1N4N A;  2QWM A;  4V1D C;  5EX5 A;  2MZ0 A;  5AQT A;  5BPL A;  1HJO A;  4KBO A;  1C56 A;  3L6Q A;  2ATB A;  3C7N A;  3E7R L;  5AQZ A;  1ZYW A;  1JXC A;  1BK8 A;  1OMY A;  1POI A;  5AR0 A;  2KGQ A;  4HHF A;  2YIL A;  3LDN A;  1KV0 A;  1ZYV A;  1B7D A;  3D2E A;  3FZF A;  3LDL A;  3M3Z A;  1K8B A;  1ATR A;  1ZU3 A;  1KAY A;  1SNB A;  2GL1 A;  4H5R A;  2QWN A;  1NRA A;  1XRS B;  5EXW A;  1JKZ A;  2YC1 C;  1CHZ A;  2GMO A;  4KYP A;  5AQG A;  5AQY A;  3KOY A;  1YUW A;  2QWP A;  1SN1 A;  1BA1 A;  1BA0 A;  1LQQ A; 
#chains in the Genus database with same CATH homology
 1MYN A;  1I6G A;  1ZUT A;  1GPT A;  3E7U X;  1WT7 A;  1AYJ A;  1OZZ A;  1C55 A;  2B3C A;  2NY8 X;  1T7E A;  3PSM A;  1MR4 A;  1SN4 A;  2KBH A;  2E3G A;  1VNB A;  2BRZ A;  2LI7 A;  2E0H A;  1FH3 A;  2N66 A;  1NPI A;  1ZFU A;  1T7A A;  1VNA A;  1ICA A;  2N2R A;  1NH5 A;  1T0Z A;  1AHO A;  1BMR A;  1LQH A;  1WMT A;  4AEI A;  4UJ0 A;  2KSK A;  4HE7 A;  2I61 A;  1LQI A;  2YEO A;  2LR3 A;  2LY6 A;  1NRB A;  1ZVE A;  1JZB A;  1DJT A;  2NY9 X;  2ASC A;  2M8B B;  1TI5 A;  2KJA A;  1ZVG A;  2B68 A;  1PX9 A;  1T7B A;  1PE4 A;  2SN3 A;  4AB0 A;  2N69 A;  1P00 A;  4CQK A;  1CN2 A;  2LJ7 A;  2KPY A;  2KBJ A;  2YBR C;  4AAZ A;  5KK4 A;  1JZA A;  2N2Q A;  1I2V A;  1SEG A;  1I2U A;  1PTX A;  1B3C A;  2LT8 A;  1WWN A;  2E3F A;  1BCG A;  1I6F A;  2LKB A;  2A7T A;  2KYQ A;  1T1T A;  5CY0 A;  1DQ7 A;  1P0A A;  1BRZ A;  2LJM A;  1NE5 A;  1GPS A;  1L4V A;  2KBK A;  2LY5 A;  1N4N A;  4V1D C;  2MZ0 A;  1C56 A;  2ATB A;  3E7R L;  1ZYW A;  1JXC A;  1BK8 A;  1OMY A;  2KGQ A;  4HHF A;  1KV0 A;  1ZYV A;  1B7D A;  1ZU3 A;  1SNB A;  2GL1 A;  1NRA A;  1JKZ A;  2YC1 C;  1CHZ A;  4KYP A;  1SN1 A;  1LQQ A; 
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