1ZYV | Genus

Total Genus 18

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	18
sequence length	66
structure length	66
Chain Sequence	NSVRDAYIADSHNCVYECARNEYCNDLCTKNGAKSGYCQWVGKYGNGCWCIELPDNVPIKGPGKCH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Toxin
source organism	Mesobuthus martensii
publication title	Structural basis for the voltage-gated Na+ channel selectivity of the scorpion alpha-like toxin BmK M1 pubmed doi rcsb
molecule keywords	Alpha-like neurotoxin BmK-I
total genus	18
structure length	66
sequence length	66
ec nomenclature
pdb deposition date	2005-06-12

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00537	Toxin_3	Scorpion toxin-like domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.30.10	Alpha Beta	2-Layer Sandwich	Defensin A-like	Knottin, scorpion toxin-like	1zyvA00

1TI5A 2BRZA 2N69A 2E0HA 1N4NA 1OMYA 1VNAA 1ZYVA 1LQHA 2LR3A 1BRZA 1PTXA 5CY0A 2E3FA 2SN3A 3E7UX 1FH3A 4CQKA 2N2QA 4HE7A 1T7AA 1ZVGA 4UJ0A 1T0ZA 1P00A 2KPYA 1DJTA 1T1TA 1BK8A 2E3GA 2NY8X 1ICAA 1WT7A 1SNBA 4HHFA 1ZU3A 1KV0A 1B7DA 2B3CA 2I61A 4KYPA 1ZFUA 2ATBA 2GL1A 2LJ7A 1I6GA 1BMRA 2KBJA 3E7RL 1C55A 2YEOA 2KYQA 1NRAA 1T7EA 1SN4A 2N66A 1I2VA 2LY6A 1JXCA 3PSMA 2LT8A 2A7TA 2B68A 1SN1A 2YBRC 1DQ7A 2ASCA 2LY5A 5KK4A 1C56A 1NE5A 1LQQA 1MYNA 4AAZA 1CN2A 1BCGA 1JZAA 1P0AA 1CHZA 2MZ0A 1JKZA 2LKBA 2KGQA 2LJMA 1SEGA 4AEIA 1JZBA 2NY9X 1ZVEA 1L4VA 2KBKA 1ZUTA 2KBHA 2LI7A 1LQIA 1PE4A 1WWNA 1MR4A 2KSKA 2YC1C 4AB0A 1T7BA 1WMTA 1ZYWA 2M8BB 1I6FA 1OZZA 1PX9A 1AHOA 1VNBA 1B3CA 1GPSA 1AYJA 1NRBA 1I2UA 2KJAA 2N2RA 4V1DC 1GPTA 1NH5A 1NPIA
chains in the Genus database with same CATH superfamily

1TI5A 3LDOA 2E88A 2QWRA 2BRZA 2N69A 2E0HA 1NGFA 5AQJA 3KHWA 5AQFA 4UAEF 1HX1A 1N4NA 1OMYA 2E8AA 1VNAA 1ZYVA 1HPMA 1LQHA 1QQNA 2LR3A 5AQKA 2YIPA 3FZKA 1KAYA 5BN9A 4H5WA 1BRZA 5BN8A 1PTXA 5CY0A 5EXWA 1UGLA 2E3FA 2SN3A 4UADE 3E7UX 5AQOA 2KHOA 5AQNA 4CQKA 1FH3A 2N2QA 4HE7A 2K35A 5AR0A 2QWQA 1T7AA 1ZVGA 2QWMA 3L4IA 1T0ZA 3R2VA 1P00A 4UJ0A 2KPYA 3FZLA 3JXUA 3FZMA 3QFUA 5FPDA 1DJTA 1T1TA 3CW4A 5AQRA 1BK8A 2MBKA 2E3GA 2NY8X 1ICAA 1GPSA 1WT7A 1SNBA 4HHFA 1KV0A 1ZU3A 3KP0A 3IUCA 1B7DA 3KOXA 2B3CA 3LDLA 1ATSA 4H5NA 2I61A 3QFPA 4KYPA 1S3XA 1ZFUA 3D2FB 1KAXA 1BUPA 1YUWA 2ATBA 2GL1A 2LJ7A 1I6GA 3KP1A 1BMRA 2KBJA 5AQSA 5AQZA 3ATVA 3E7RL 2VY6A 2LN8A 3L6QA 2YEOA 5AQGA 5FPEA 1C55A 3QI7A 2KYQA 4H5RA 2G2KA 1NRAA 5FPMA 1T7EA 1SN4A 5EVZA 2N66A 3D2EA 2QWOA 1POIA 4GNIA 1NGHA 1QQOA 1I2VA 4FL9A 2LY6A 1JXCA 2QWPA 3ATUA 3LDNA 5F0XA 5F1XA 3PSMA 2JDQD 2LT8A 5AQUA 2A7TA 2B68A 2YILA 2GMOA 4HWIA 5AQXA 1SN1A 3QMLA 5AQTA 1NGDA 5BPNA 3KC6A 2YBRC 1DQ7A 3GDQA 2ASCA 3C7NA 4FSVA 2QXLA 5AQQA 2LY5A 5KK4A 1C56A 1NE5A 5BPLA 1QQMA 1NGIA 5AQMA 1LQQA 1DKGD 5AQHA 4KBOA 1MYNA 1NGJA 1NGBA 1NGCA 3KVGA 1BCGA 5AQVA 4AAZA 5BPMA 1CN2A 3A8YA 1JZAA 1P0AA 3GKUA 1CHZA 1ATRA 3FZFA 3KOZA 2MZ0A 3L56A 4H5VA 1JKZA 2LKBA 2KGQA 2QWLA 3SF4D 1BA1A 2LJMA 1SEGA 4AEIA 1JZBA 5AQWA 2NY9X 1ZVEA 3KOYA 1L4VA 5AQLA 2KBKA 3KOWA 1ZUTA 2KBHA 2LI7A 3BK3C 1HJOA 2MN5A 3I33A 1NGEA 3M3ZA 4V1DC 1LQIA 1PE4A 1WWNA 3FZHA 1BA0A 1MR4A 2KSKA 2YC1C 5FPNA 1T7BA 1WMTA 1ZYWA 4AB0A 4UAFE 1K8BA 2M8BB 1XRSB 1I6FA 2YIOA 1OZZA 5EY4A 5EX5A 2QWNA 1VNBA 1AHOA 1NGGA 1NGAA 1PX9A 2V7ZA 3C7NB 3FE1A 3LDPA 4IO8A 5F2RA 1B3CA 1AYJA 3CQXA 1NRBA 5AQPA 1I2UA 2KJAA 3HSCA 2N2RA 2D56A 2BUPA 2QW9A 3AY9A 3GL1A 3LDQA 2E2FA 3D2EB 3D2FA 4H5TA 1NH5A 5AQIA 1NPIA 5AQYA 1GPTA 1KAZA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1TI5 A;  2BRZ A;  2N69 A;  2E0H A;  1N4N A;  1OMY A;  1VNA A;  1ZYV A;  1LQH A;  2LR3 A;  1BRZ A;  1PTX A;  5CY0 A;  2E3F A;  2SN3 A;  3E7U X;  1FH3 A;  4CQK A;  2N2Q A;  4HE7 A;  1T7A A;  1ZVG A;  4UJ0 A;  1T0Z A;  1P00 A;  2KPY A;  1DJT A;  1T1T A;  1BK8 A;  2E3G A;  2NY8 X;  1ICA A;  1WT7 A;  1SNB A;  4HHF A;  1ZU3 A;  1KV0 A;  1B7D A;  2B3C A;  2I61 A;  4KYP A;  1ZFU A;  2ATB A;  2GL1 A;  2LJ7 A;  1I6G A;  1BMR A;  2KBJ A;  3E7R L;  1C55 A;  2YEO A;  2KYQ A;  1NRA A;  1T7E A;  1SN4 A;  2N66 A;  1I2V A;  2LY6 A;  1JXC A;  3PSM A;  2LT8 A;  2A7T A;  2B68 A;  1SN1 A;  2YBR C;  1DQ7 A;  2ASC A;  2LY5 A;  5KK4 A;  1C56 A;  1NE5 A;  1LQQ A;  1MYN A;  4AAZ A;  1CN2 A;  1BCG A;  1JZA A;  1P0A A;  1CHZ A;  2MZ0 A;  1JKZ A;  2LKB A;  2KGQ A;  2LJM A;  1SEG A;  4AEI A;  1JZB A;  2NY9 X;  1ZVE A;  1L4V A;  2KBK A;  1ZUT A;  2KBH A;  2LI7 A;  1LQI A;  1PE4 A;  1WWN A;  1MR4 A;  2KSK A;  2YC1 C;  4AB0 A;  1T7B A;  1WMT A;  1ZYW A;  2M8B B;  1I6F A;  1OZZ A;  1PX9 A;  1AHO A;  1VNB A;  1B3C A;  1GPS A;  1AYJ A;  1NRB A;  1I2U A;  2KJA A;  2N2R A;  4V1D C;  1GPT A;  1NH5 A;  1NPI A; 
#chains in the Genus database with same CATH topology
 1TI5 A;  3LDO A;  2E88 A;  2QWR A;  2BRZ A;  2N69 A;  2E0H A;  1NGF A;  5AQJ A;  3KHW A;  5AQF A;  4UAE F;  1HX1 A;  1N4N A;  1OMY A;  2E8A A;  1VNA A;  1ZYV A;  1HPM A;  1LQH A;  1QQN A;  2LR3 A;  5AQK A;  2YIP A;  3FZK A;  1KAY A;  5BN9 A;  4H5W A;  1BRZ A;  5BN8 A;  1PTX A;  5CY0 A;  5EXW A;  1UGL A;  2E3F A;  2SN3 A;  4UAD E;  3E7U X;  5AQO A;  2KHO A;  5AQN A;  4CQK A;  1FH3 A;  2N2Q A;  4HE7 A;  2K35 A;  5AR0 A;  2QWQ A;  1T7A A;  1ZVG A;  2QWM A;  3L4I A;  1T0Z A;  3R2V A;  1P00 A;  4UJ0 A;  2KPY A;  3FZL A;  3JXU A;  3FZM A;  3QFU A;  5FPD A;  1DJT A;  1T1T A;  3CW4 A;  5AQR A;  1BK8 A;  2MBK A;  2E3G A;  2NY8 X;  1ICA A;  1GPS A;  1WT7 A;  1SNB A;  4HHF A;  1KV0 A;  1ZU3 A;  3KP0 A;  3IUC A;  1B7D A;  3KOX A;  2B3C A;  3LDL A;  1ATS A;  4H5N A;  2I61 A;  3QFP A;  4KYP A;  1S3X A;  1ZFU A;  3D2F B;  1KAX A;  1BUP A;  1YUW A;  2ATB A;  2GL1 A;  2LJ7 A;  1I6G A;  3KP1 A;  1BMR A;  2KBJ A;  5AQS A;  5AQZ A;  3ATV A;  3E7R L;  2VY6 A;  2LN8 A;  3L6Q A;  2YEO A;  5AQG A;  5FPE A;  1C55 A;  3QI7 A;  2KYQ A;  4H5R A;  2G2K A;  1NRA A;  5FPM A;  1T7E A;  1SN4 A;  5EVZ A;  2N66 A;  3D2E A;  2QWO A;  1POI A;  4GNI A;  1NGH A;  1QQO A;  1I2V A;  4FL9 A;  2LY6 A;  1JXC A;  2QWP A;  3ATU A;  3LDN A;  5F0X A;  5F1X A;  3PSM A;  2JDQ D;  2LT8 A;  5AQU A;  2A7T A;  2B68 A;  2YIL A;  2GMO A;  4HWI A;  5AQX A;  1SN1 A;  3QML A;  5AQT A;  1NGD A;  5BPN A;  3KC6 A;  2YBR C;  1DQ7 A;  3GDQ A;  2ASC A;  3C7N A;  4FSV A;  2QXL A;  5AQQ A;  2LY5 A;  5KK4 A;  1C56 A;  1NE5 A;  5BPL A;  1QQM A;  1NGI A;  5AQM A;  1LQQ A;  1DKG D;  5AQH A;  4KBO A;  1MYN A;  1NGJ A;  1NGB A;  1NGC A;  3KVG A;  1BCG A;  5AQV A;  4AAZ A;  5BPM A;  1CN2 A;  3A8Y A;  1JZA A;  1P0A A;  3GKU A;  1CHZ A;  1ATR A;  3FZF A;  3KOZ A;  2MZ0 A;  3L56 A;  4H5V A;  1JKZ A;  2LKB A;  2KGQ A;  2QWL A;  3SF4 D;  1BA1 A;  2LJM A;  1SEG A;  4AEI A;  1JZB A;  5AQW A;  2NY9 X;  1ZVE A;  3KOY A;  1L4V A;  5AQL A;  2KBK A;  3KOW A;  1ZUT A;  2KBH A;  2LI7 A;  3BK3 C;  1HJO A;  2MN5 A;  3I33 A;  1NGE A;  3M3Z A;  4V1D C;  1LQI A;  1PE4 A;  1WWN A;  3FZH A;  1BA0 A;  1MR4 A;  2KSK A;  2YC1 C;  5FPN A;  1T7B A;  1WMT A;  1ZYW A;  4AB0 A;  4UAF E;  1K8B A;  2M8B B;  1XRS B;  1I6F A;  2YIO A;  1OZZ A;  5EY4 A;  5EX5 A;  2QWN A;  1VNB A;  1AHO A;  1NGG A;  1NGA A;  1PX9 A;  2V7Z A;  3C7N B;  3FE1 A;  3LDP A;  4IO8 A;  5F2R A;  1B3C A;  1AYJ A;  3CQX A;  1NRB A;  5AQP A;  1I2U A;  2KJA A;  3HSC A;  2N2R A;  2D56 A;  2BUP A;  2QW9 A;  3AY9 A;  3GL1 A;  3LDQ A;  2E2F A;  3D2E B;  3D2F A;  4H5T A;  1NH5 A;  5AQI A;  1NPI A;  5AQY A;  1GPT A;  1KAZ A; 
#chains in the Genus database with same CATH homology
 1TI5 A;  2BRZ A;  2N69 A;  2E0H A;  1N4N A;  1OMY A;  1VNA A;  1ZYV A;  1LQH A;  2LR3 A;  1BRZ A;  1PTX A;  5CY0 A;  2E3F A;  2SN3 A;  3E7U X;  1FH3 A;  4CQK A;  2N2Q A;  4HE7 A;  1T7A A;  1ZVG A;  4UJ0 A;  1T0Z A;  1P00 A;  2KPY A;  1DJT A;  1T1T A;  1BK8 A;  2E3G A;  2NY8 X;  1ICA A;  1WT7 A;  1SNB A;  4HHF A;  1ZU3 A;  1KV0 A;  1B7D A;  2B3C A;  2I61 A;  4KYP A;  1ZFU A;  2ATB A;  2GL1 A;  2LJ7 A;  1I6G A;  1BMR A;  2KBJ A;  3E7R L;  1C55 A;  2YEO A;  2KYQ A;  1NRA A;  1T7E A;  1SN4 A;  2N66 A;  1I2V A;  2LY6 A;  1JXC A;  3PSM A;  2LT8 A;  2A7T A;  2B68 A;  1SN1 A;  2YBR C;  1DQ7 A;  2ASC A;  2LY5 A;  5KK4 A;  1C56 A;  1NE5 A;  1LQQ A;  1MYN A;  4AAZ A;  1CN2 A;  1BCG A;  1JZA A;  1P0A A;  1CHZ A;  2MZ0 A;  1JKZ A;  2LKB A;  2KGQ A;  2LJM A;  1SEG A;  4AEI A;  1JZB A;  2NY9 X;  1ZVE A;  1L4V A;  2KBK A;  1ZUT A;  2KBH A;  2LI7 A;  1LQI A;  1PE4 A;  1WWN A;  1MR4 A;  2KSK A;  2YC1 C;  4AB0 A;  1T7B A;  1WMT A;  1ZYW A;  2M8B B;  1I6F A;  1OZZ A;  1PX9 A;  1AHO A;  1VNB A;  1B3C A;  1GPS A;  1AYJ A;  1NRB A;  1I2U A;  2KJA A;  2N2R A;  4V1D C;  1GPT A;  1NH5 A;  1NPI A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1ZYVA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations