1ICAA

Refined three-dimensional structure of insect defensin a
Total Genus 6
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
40
structure length
40
Chain Sequence
ATCDLLSGTGINHSACAAHCLLRGNRGGYCNGKGVCVCRN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Antibacterial protein
molecule keywords INSECT DEFENSIN A
publication title Refined three-dimensional solution structure of insect defensin A.
pubmed doi rcsb
source organism Protophormia terraenovae
total genus 6
structure length 40
sequence length 40
ec nomenclature
pdb deposition date 1994-12-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01097 Defensin_2 Arthropod defensin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1icaA00
2KSKA 1ZVEA 1LQIA 2LJMA 1NRBA 2KBKA 1T7BA 4AAZA 4HHFA 2N66A 2KPYA 2SN3A 1ZYVA 2LKBA 2KBHA 2E0HA 2E3GA 1ICAA 2E3FA 2KBJA 1AHOA 4V1DC 1CN2A 1TI5A 3E7RL 2A7TA 1NRAA 2N2RA 2I61A 1P00A 1T0ZA 1GPSA 1FH3A 1GPTA 1B7DA 1KV0A 4KYPA 1MR4A 1DQ7A 1SN1A 1PX9A 4AB0A 2B68A 3PSMA 1BK8A 1L4VA 2YC1C 1WT7A 1ZU3A 1SN4A 1PE4A 1I6GA 2MZ0A 2GL1A 1VNBA 2NY8X 1T1TA 3E7UX 5CY0A 1N4NA 1SEGA 1I2VA 1NE5A 2YEOA 1ZYWA 1P0AA 1BCGA 2BRZA 4HE7A 2ASCA 4AEIA 2B3CA 1NH5A 4CQKA 2N2QA 2LY5A 1CHZA 5KK4A 1DJTA 1ZFUA 2KGQA 1C55A 1ZUTA 1WMTA 2LJ7A 1JZAA 1SNBA 1VNAA 2LT8A 1NPIA 2LR3A 1I6FA 1JKZA 2M8BB 2LY6A 2YBRC 1BMRA 1JXCA 1AYJA 2KJAA 1MYNA 1JZBA 1T7EA 1WWNA 1T7AA 1B3CA 1OMYA 1BRZA 1I2UA 1LQHA 1PTXA 1ZVGA 2LI7A 4UJ0A 1C56A 2KYQA 1OZZA 1LQQA 2NY9X 2N69A 2ATBA
chains in the Genus database with same CATH superfamily
1NGDA 3LDLA 2KSKA 1ZVEA 1LQIA 2LJMA 1NRBA 1QQOA 2QWPA 3FZMA 3KOXA 2KBKA 5AQWA 1T7BA 1UGLA 4AAZA 3QMLA 3BK3C 5AQTA 4HHFA 2N66A 3KC6A 1NGHA 2KPYA 5AQGA 2SN3A 1ZYVA 3LDNA 3M3ZA 1QQMA 4UADE 1NGGA 2LKBA 2D56A 2KBHA 2E0HA 3L6QA 3GKUA 3LDPA 4H5RA 1NGFA 2E3GA 2K35A 1ICAA 3L4IA 1XRSB 2E3FA 5AQFA 1ATSA 2KBJA 1AHOA 1HPMA 2MBKA 3KP0A 5AQQA 4V1DC 1CN2A 3SF4D 1TI5A 1ATRA 2LN8A 3D2EA 1NGEA 3E7RL 2MN5A 2QXLA 3HSCA 1NGJA 2A7TA 2YILA 1NRAA 3ATUA 2N2RA 2I61A 3D2FB 1P00A 5AQXA 1DKGD 1T0ZA 1GPSA 1NGIA 1FH3A 5AQUA 3FE1A 5F2RA 2BUPA 4GNIA 3LDOA 5AQPA 5EX5A 1BUPA 1GPTA 4FL9A 4UAFE 1BA0A 5EXWA 1B7DA 1KV0A 1S3XA 1YUWA 1MR4A 2YIPA 3A8YA 4KYPA 5AQOA 5BPNA 1DQ7A 1SN1A 1PX9A 2JDQD 3FZLA 3GL1A 5AQRA 4AB0A 2B68A 1HX1A 3PSMA 4KBOA 1BK8A 1L4VA 5BPLA 2YC1C 1WT7A 2QWMA 4H5VA 1ZU3A 5AQLA 5FPEA 3QI7A 1SN4A 2GMOA 3KOYA 1PE4A 1I6GA 5FPDA 2MZ0A 5AQVA 2GL1A 4H5WA 1VNBA 2NY8X 2QWOA 4UAEF 1T1TA 3E7UX 1NGBA 3KP1A 5EVZA 1POIA 3CQXA 5CY0A 2QWQA 2VY6A 3KHWA 5AQKA 3D2EB 1N4NA 2ATBA 1SEGA 2G2KA 3L56A 2QWNA 2QWLA 1NE5A 1I2VA 2YEOA 1ZYWA 2E8AA 1P0AA 3FZHA 2E2FA 3C7NA 5BN9A 1BCGA 5AQMA 3FZKA 3I33A 2BRZA 5AR0A 5AQSA 4HE7A 3LDQA 1HJOA 2ASCA 3ATVA 4AEIA 5F0XA 2B3CA 1NH5A 4CQKA 2QWRA 5AQNA 2N2QA 2LY5A 1CHZA 3GDQA 1BA1A 2YIOA 1KAZA 5EY4A 2QW9A 5KK4A 5BN8A 1NGAA 1DJTA 1ZFUA 2KGQA 3CW4A 3JXUA 3QFUA 1C55A 3QFPA 1ZUTA 1WMTA 2KHOA 4H5NA 2LJ7A 4H5TA 3AY9A 1JZAA 1SNBA 5FPNA 4HWIA 5BPMA 1VNAA 2LT8A 1NPIA 4FSVA 2LR3A 1I6FA 1JKZA 3IUCA 2M8BB 3FZFA 2LY6A 2YBRC 1BMRA 1JXCA 1AYJA 2KJAA 1QQNA 1MYNA 1JZBA 1T7EA 3KOZA 5AQJA 1WWNA 3KOWA 2V7ZA 1NGCA 1T7AA 5AQYA 2E88A 3D2FA 3C7NB 1B3CA 1OMYA 1BRZA 1KAXA 3KVGA 5AQIA 1LQHA 1PTXA 1ZVGA 2LI7A 5FPMA 4UJ0A 1I2UA 5F1XA 3R2VA 1C56A 2KYQA 5AQHA 1OZZA 1LQQA 2NY9X 5AQZA 2N69A 1KAYA 4IO8A 1K8BA
chains in the Genus database with same CATH topology
2KSKA 1ZVEA 1LQIA 2LJMA 1NRBA 2KBKA 1T7BA 4AAZA 4HHFA 2N66A 2KPYA 2SN3A 1ZYVA 2LKBA 2KBHA 2E0HA 2E3GA 1ICAA 2E3FA 2KBJA 1AHOA 4V1DC 1CN2A 1TI5A 3E7RL 2A7TA 1NRAA 2N2RA 2I61A 1P00A 1T0ZA 1GPSA 1FH3A 1GPTA 1B7DA 1KV0A 4KYPA 1MR4A 1DQ7A 1SN1A 1PX9A 4AB0A 2B68A 3PSMA 1BK8A 1L4VA 2YC1C 1WT7A 1ZU3A 1SN4A 1PE4A 1I6GA 2MZ0A 2GL1A 1VNBA 2NY8X 1T1TA 3E7UX 5CY0A 1N4NA 1SEGA 1I2VA 1NE5A 2YEOA 1ZYWA 1P0AA 1BCGA 2BRZA 4HE7A 2ASCA 4AEIA 2B3CA 1NH5A 4CQKA 2N2QA 2LY5A 1CHZA 5KK4A 1DJTA 1ZFUA 2KGQA 1C55A 1ZUTA 1WMTA 2LJ7A 1JZAA 1SNBA 1VNAA 2LT8A 1NPIA 2LR3A 1I6FA 1JKZA 2M8BB 2LY6A 2YBRC 1BMRA 1JXCA 1AYJA 2KJAA 1MYNA 1JZBA 1T7EA 1WWNA 1T7AA 1B3CA 1OMYA 1BRZA 1I2UA 1LQHA 1PTXA 1ZVGA 2LI7A 4UJ0A 1C56A 2KYQA 1OZZA 1LQQA 2NY9X 2N69A 2ATBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KSK A;  1ZVE A;  1LQI A;  2LJM A;  1NRB A;  2KBK A;  1T7B A;  4AAZ A;  4HHF A;  2N66 A;  2KPY A;  2SN3 A;  1ZYV A;  2LKB A;  2KBH A;  2E0H A;  2E3G A;  1ICA A;  2E3F A;  2KBJ A;  1AHO A;  4V1D C;  1CN2 A;  1TI5 A;  3E7R L;  2A7T A;  1NRA A;  2N2R A;  2I61 A;  1P00 A;  1T0Z A;  1GPS A;  1FH3 A;  1GPT A;  1B7D A;  1KV0 A;  4KYP A;  1MR4 A;  1DQ7 A;  1SN1 A;  1PX9 A;  4AB0 A;  2B68 A;  3PSM A;  1BK8 A;  1L4V A;  2YC1 C;  1WT7 A;  1ZU3 A;  1SN4 A;  1PE4 A;  1I6G A;  2MZ0 A;  2GL1 A;  1VNB A;  2NY8 X;  1T1T A;  3E7U X;  5CY0 A;  1N4N A;  1SEG A;  1I2V A;  1NE5 A;  2YEO A;  1ZYW A;  1P0A A;  1BCG A;  2BRZ A;  4HE7 A;  2ASC A;  4AEI A;  2B3C A;  1NH5 A;  4CQK A;  2N2Q A;  2LY5 A;  1CHZ A;  5KK4 A;  1DJT A;  1ZFU A;  2KGQ A;  1C55 A;  1ZUT A;  1WMT A;  2LJ7 A;  1JZA A;  1SNB A;  1VNA A;  2LT8 A;  1NPI A;  2LR3 A;  1I6F A;  1JKZ A;  2M8B B;  2LY6 A;  2YBR C;  1BMR A;  1JXC A;  1AYJ A;  2KJA A;  1MYN A;  1JZB A;  1T7E A;  1WWN A;  1T7A A;  1B3C A;  1OMY A;  1BRZ A;  1I2U A;  1LQH A;  1PTX A;  1ZVG A;  2LI7 A;  4UJ0 A;  1C56 A;  2KYQ A;  1OZZ A;  1LQQ A;  2NY9 X;  2N69 A;  2ATB A; 
#chains in the Genus database with same CATH topology
 1NGD A;  3LDL A;  2KSK A;  1ZVE A;  1LQI A;  2LJM A;  1NRB A;  1QQO A;  2QWP A;  3FZM A;  3KOX A;  2KBK A;  5AQW A;  1T7B A;  1UGL A;  4AAZ A;  3QML A;  3BK3 C;  5AQT A;  4HHF A;  2N66 A;  3KC6 A;  1NGH A;  2KPY A;  5AQG A;  2SN3 A;  1ZYV A;  3LDN A;  3M3Z A;  1QQM A;  4UAD E;  1NGG A;  2LKB A;  2D56 A;  2KBH A;  2E0H A;  3L6Q A;  3GKU A;  3LDP A;  4H5R A;  1NGF A;  2E3G A;  2K35 A;  1ICA A;  3L4I A;  1XRS B;  2E3F A;  5AQF A;  1ATS A;  2KBJ A;  1AHO A;  1HPM A;  2MBK A;  3KP0 A;  5AQQ A;  4V1D C;  1CN2 A;  3SF4 D;  1TI5 A;  1ATR A;  2LN8 A;  3D2E A;  1NGE A;  3E7R L;  2MN5 A;  2QXL A;  3HSC A;  1NGJ A;  2A7T A;  2YIL A;  1NRA A;  3ATU A;  2N2R A;  2I61 A;  3D2F B;  1P00 A;  5AQX A;  1DKG D;  1T0Z A;  1GPS A;  1NGI A;  1FH3 A;  5AQU A;  3FE1 A;  5F2R A;  2BUP A;  4GNI A;  3LDO A;  5AQP A;  5EX5 A;  1BUP A;  1GPT A;  4FL9 A;  4UAF E;  1BA0 A;  5EXW A;  1B7D A;  1KV0 A;  1S3X A;  1YUW A;  1MR4 A;  2YIP A;  3A8Y A;  4KYP A;  5AQO A;  5BPN A;  1DQ7 A;  1SN1 A;  1PX9 A;  2JDQ D;  3FZL A;  3GL1 A;  5AQR A;  4AB0 A;  2B68 A;  1HX1 A;  3PSM A;  4KBO A;  1BK8 A;  1L4V A;  5BPL A;  2YC1 C;  1WT7 A;  2QWM A;  4H5V A;  1ZU3 A;  5AQL A;  5FPE A;  3QI7 A;  1SN4 A;  2GMO A;  3KOY A;  1PE4 A;  1I6G A;  5FPD A;  2MZ0 A;  5AQV A;  2GL1 A;  4H5W A;  1VNB A;  2NY8 X;  2QWO A;  4UAE F;  1T1T A;  3E7U X;  1NGB A;  3KP1 A;  5EVZ A;  1POI A;  3CQX A;  5CY0 A;  2QWQ A;  2VY6 A;  3KHW A;  5AQK A;  3D2E B;  1N4N A;  2ATB A;  1SEG A;  2G2K A;  3L56 A;  2QWN A;  2QWL A;  1NE5 A;  1I2V A;  2YEO A;  1ZYW A;  2E8A A;  1P0A A;  3FZH A;  2E2F A;  3C7N A;  5BN9 A;  1BCG A;  5AQM A;  3FZK A;  3I33 A;  2BRZ A;  5AR0 A;  5AQS A;  4HE7 A;  3LDQ A;  1HJO A;  2ASC A;  3ATV A;  4AEI A;  5F0X A;  2B3C A;  1NH5 A;  4CQK A;  2QWR A;  5AQN A;  2N2Q A;  2LY5 A;  1CHZ A;  3GDQ A;  1BA1 A;  2YIO A;  1KAZ A;  5EY4 A;  2QW9 A;  5KK4 A;  5BN8 A;  1NGA A;  1DJT A;  1ZFU A;  2KGQ A;  3CW4 A;  3JXU A;  3QFU A;  1C55 A;  3QFP A;  1ZUT A;  1WMT A;  2KHO A;  4H5N A;  2LJ7 A;  4H5T A;  3AY9 A;  1JZA A;  1SNB A;  5FPN A;  4HWI A;  5BPM A;  1VNA A;  2LT8 A;  1NPI A;  4FSV A;  2LR3 A;  1I6F A;  1JKZ A;  3IUC A;  2M8B B;  3FZF A;  2LY6 A;  2YBR C;  1BMR A;  1JXC A;  1AYJ A;  2KJA A;  1QQN A;  1MYN A;  1JZB A;  1T7E A;  3KOZ A;  5AQJ A;  1WWN A;  3KOW A;  2V7Z A;  1NGC A;  1T7A A;  5AQY A;  2E88 A;  3D2F A;  3C7N B;  1B3C A;  1OMY A;  1BRZ A;  1KAX A;  3KVG A;  5AQI A;  1LQH A;  1PTX A;  1ZVG A;  2LI7 A;  5FPM A;  4UJ0 A;  1I2U A;  5F1X A;  3R2V A;  1C56 A;  2KYQ A;  5AQH A;  1OZZ A;  1LQQ A;  2NY9 X;  5AQZ A;  2N69 A;  1KAY A;  4IO8 A;  1K8B A; 
#chains in the Genus database with same CATH homology
 2KSK A;  1ZVE A;  1LQI A;  2LJM A;  1NRB A;  2KBK A;  1T7B A;  4AAZ A;  4HHF A;  2N66 A;  2KPY A;  2SN3 A;  1ZYV A;  2LKB A;  2KBH A;  2E0H A;  2E3G A;  1ICA A;  2E3F A;  2KBJ A;  1AHO A;  4V1D C;  1CN2 A;  1TI5 A;  3E7R L;  2A7T A;  1NRA A;  2N2R A;  2I61 A;  1P00 A;  1T0Z A;  1GPS A;  1FH3 A;  1GPT A;  1B7D A;  1KV0 A;  4KYP A;  1MR4 A;  1DQ7 A;  1SN1 A;  1PX9 A;  4AB0 A;  2B68 A;  3PSM A;  1BK8 A;  1L4V A;  2YC1 C;  1WT7 A;  1ZU3 A;  1SN4 A;  1PE4 A;  1I6G A;  2MZ0 A;  2GL1 A;  1VNB A;  2NY8 X;  1T1T A;  3E7U X;  5CY0 A;  1N4N A;  1SEG A;  1I2V A;  1NE5 A;  2YEO A;  1ZYW A;  1P0A A;  1BCG A;  2BRZ A;  4HE7 A;  2ASC A;  4AEI A;  2B3C A;  1NH5 A;  4CQK A;  2N2Q A;  2LY5 A;  1CHZ A;  5KK4 A;  1DJT A;  1ZFU A;  2KGQ A;  1C55 A;  1ZUT A;  1WMT A;  2LJ7 A;  1JZA A;  1SNB A;  1VNA A;  2LT8 A;  1NPI A;  2LR3 A;  1I6F A;  1JKZ A;  2M8B B;  2LY6 A;  2YBR C;  1BMR A;  1JXC A;  1AYJ A;  2KJA A;  1MYN A;  1JZB A;  1T7E A;  1WWN A;  1T7A A;  1B3C A;  1OMY A;  1BRZ A;  1I2U A;  1LQH A;  1PTX A;  1ZVG A;  2LI7 A;  4UJ0 A;  1C56 A;  2KYQ A;  1OZZ A;  1LQQ A;  2NY9 X;  2N69 A;  2ATB A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...