1L4VA

Solution structure of sapecin
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
40
structure length
40
Chain Sequence
ATCDLLSGTGINHSACAAHCLLRGNRGGYCNGKAVCVCRN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antibiotic
molecule keywords Sapecin
publication title 1H nuclear magnetic resonance study of the solution conformation of an antibacterial protein, sapecin.
pubmed doi rcsb
total genus 5
structure length 40
sequence length 40
ec nomenclature
pdb deposition date 2002-03-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01097 Defensin_2 Arthropod defensin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 1l4vA00
1JZBA 1L4VA 2NY8X 1I2VA 2M8BB 1MR4A 2YBRC 1GPTA 2N2RA 2ATBA 1ZFUA 2YEOA 1VNAA 1NPIA 1BCGA 1AHOA 1T7EA 4AEIA 1GPSA 2LY5A 4CQKA 5KK4A 3PSMA 1ZYWA 1ZYVA 1SN4A 1SNBA 1OMYA 2NY9X 1C56A 2LJ7A 4AAZA 3E7RL 1SEGA 1ZVGA 1NRBA 1KV0A 1N4NA 1P00A 1CHZA 1LQIA 2B68A 2SN3A 1ZUTA 2A7TA 1CN2A 1I6FA 1BK8A 1T7BA 2KPYA 2LT8A 4AB0A 2B3CA 1T0ZA 2N66A 1PTXA 2KBJA 4KYPA 1MYNA 4HE7A 1LQHA 2GL1A 1NE5A 1BMRA 1NH5A 4UJ0A 1ZU3A 2E3FA 1B7DA 2E3GA 1JZAA 1PX9A 1VNBA 2N69A 2BRZA 2LR3A 2YC1C 1TI5A 5CY0A 2ASCA 1BRZA 1B3CA 1DJTA 1ZVEA 2KYQA 1LQQA 1SN1A 1WWNA 4V1DC 1NRAA 1FH3A 1JXCA 1I6GA 1ICAA 2KGQA 2LJMA 2LY6A 2KBHA 4HHFA 1OZZA 1DQ7A 1T1TA 1I2UA 1WMTA 2E0HA 1C55A 2LKBA 2LI7A 2I61A 1PE4A 2KJAA 3E7UX 1AYJA 1JKZA 1T7AA 1P0AA 2KSKA 1WT7A 2KBKA 2MZ0A 2N2QA
chains in the Genus database with same CATH superfamily
4H5VA 1UGLA 1JZBA 5AQXA 1HPMA 5EY4A 5AQGA 2QW9A 1L4VA 5F0XA 2NY8X 4KBOA 1I2VA 3CQXA 2M8BB 1MR4A 1NGGA 2YBRC 1NGEA 5AQYA 3L4IA 1GPTA 2N2RA 3KOZA 2ATBA 1ZFUA 4GNIA 2YEOA 1VNAA 1NPIA 3KOYA 1BCGA 1QQNA 1AHOA 1T7EA 4AEIA 1GPSA 2YIOA 2LY5A 2QWQA 3I33A 3M3ZA 3IUCA 3JXUA 5AQSA 4CQKA 3FZHA 5KK4A 1NGJA 2QWOA 1KAZA 3PSMA 5BPNA 5AQRA 1ZYWA 1ZYVA 1S3XA 1SN4A 5AQJA 5AQHA 4H5WA 1SNBA 5EX5A 1OMYA 2NY9X 1C56A 2QWLA 1QQOA 2LJ7A 4AAZA 4H5NA 3E7RL 1XRSB 5AQNA 1SEGA 2BUPA 1NGAA 3QMLA 1ZVGA 3QFUA 3R2VA 1NRBA 1KV0A 5AQWA 5EVZA 5AQTA 5BN9A 2D56A 1N4NA 1P00A 1BUPA 1KAYA 1NGCA 1NGDA 2E8AA 1CHZA 2QWPA 5AQUA 1NGIA 2VY6A 1LQIA 2G2KA 4FL9A 1BA1A 2B68A 2SN3A 3HSCA 1ZUTA 2A7TA 3BK3C 3FE1A 1I6FA 2QWRA 3FZLA 3SF4D 1CN2A 1BK8A 4UAFE 1T7BA 2KPYA 2LT8A 5AQKA 3KOXA 4AB0A 2B3CA 1T0ZA 1DKGD 3KC6A 3LDQA 3GKUA 2N66A 1PTXA 2KBJA 5AQPA 2GMOA 5AQIA 1HJOA 4UADE 4KYPA 4UAEF 2LN8A 1MYNA 2KHOA 3AY9A 1LQHA 3D2FA 2GL1A 4HE7A 5EXWA 5FPDA 1NE5A 5BPMA 1BMRA 5BN8A 1NH5A 1POIA 3QI7A 5BPLA 1NGHA 4UJ0A 1ZU3A 2E3FA 1B7DA 2E3GA 5AR0A 4HWIA 3GDQA 1JZAA 1ICAA 1PX9A 5AQMA 1VNBA 2N69A 2JDQD 2E2FA 3GL1A 5AQFA 2BRZA 2LR3A 2YC1C 3D2FB 1TI5A 3KVGA 2ASCA 5CY0A 3C7NA 3L6QA 2V7ZA 3FZKA 1DJTA 3A8YA 1NGFA 3LDOA 1ZVEA 5AQVA 1B3CA 2KYQA 1LQQA 1SN1A 1KAXA 1WWNA 4H5RA 4IO8A 1HX1A 1NRAA 4V1DC 3KP1A 3CW4A 3FZMA 1FH3A 1JXCA 3KHWA 2QXLA 2KGQA 2LJMA 3L56A 3LDLA 1I6GA 5AQOA 1ATRA 1K8BA 3D2EA 1QQMA 2LY6A 3LDNA 5F1XA 2KBHA 4HHFA 2MN5A 2MBKA 1OZZA 2YIPA 5FPNA 1DQ7A 1BA0A 1T1TA 2K35A 3C7NB 3KP0A 1I2UA 1ATSA 3FZFA 1WMTA 5AQQA 2E0HA 2QWNA 2LKBA 4FSVA 1C55A 2QWMA 3ATUA 2LI7A 5FPEA 3LDPA 1NGBA 2I61A 4H5TA 3D2EB 5AQLA 5AQZA 1PE4A 2KJAA 5F2RA 3E7UX 3QFPA 1AYJA 1YUWA 2E88A 5FPMA 1JKZA 1T7AA 1BRZA 1P0AA 2KSKA 3ATVA 2YILA 1WT7A 3KOWA 2KBKA 2MZ0A 2N2QA
chains in the Genus database with same CATH topology
1JZBA 1L4VA 2NY8X 1I2VA 2M8BB 1MR4A 2YBRC 1GPTA 2N2RA 2ATBA 1ZFUA 2YEOA 1VNAA 1NPIA 1BCGA 1AHOA 1T7EA 4AEIA 1GPSA 2LY5A 4CQKA 5KK4A 3PSMA 1ZYWA 1ZYVA 1SN4A 1SNBA 1OMYA 2NY9X 1C56A 2LJ7A 4AAZA 3E7RL 1SEGA 1ZVGA 1NRBA 1KV0A 1N4NA 1P00A 1CHZA 1LQIA 2B68A 2SN3A 1ZUTA 2A7TA 1CN2A 1I6FA 1BK8A 1T7BA 2KPYA 2LT8A 4AB0A 2B3CA 1T0ZA 2N66A 1PTXA 2KBJA 4KYPA 1MYNA 4HE7A 1LQHA 2GL1A 1NE5A 1BMRA 1NH5A 4UJ0A 1ZU3A 2E3FA 1B7DA 2E3GA 1JZAA 1PX9A 1VNBA 2N69A 2BRZA 2LR3A 2YC1C 1TI5A 5CY0A 2ASCA 1BRZA 1B3CA 1DJTA 1ZVEA 2KYQA 1LQQA 1SN1A 1WWNA 4V1DC 1NRAA 1FH3A 1JXCA 1I6GA 1ICAA 2KGQA 2LJMA 2LY6A 2KBHA 4HHFA 1OZZA 1DQ7A 1T1TA 1I2UA 1WMTA 2E0HA 1C55A 2LKBA 2LI7A 2I61A 1PE4A 2KJAA 3E7UX 1AYJA 1JKZA 1T7AA 1P0AA 2KSKA 1WT7A 2KBKA 2MZ0A 2N2QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JZB A;  1L4V A;  2NY8 X;  1I2V A;  2M8B B;  1MR4 A;  2YBR C;  1GPT A;  2N2R A;  2ATB A;  1ZFU A;  2YEO A;  1VNA A;  1NPI A;  1BCG A;  1AHO A;  1T7E A;  4AEI A;  1GPS A;  2LY5 A;  4CQK A;  5KK4 A;  3PSM A;  1ZYW A;  1ZYV A;  1SN4 A;  1SNB A;  1OMY A;  2NY9 X;  1C56 A;  2LJ7 A;  4AAZ A;  3E7R L;  1SEG A;  1ZVG A;  1NRB A;  1KV0 A;  1N4N A;  1P00 A;  1CHZ A;  1LQI A;  2B68 A;  2SN3 A;  1ZUT A;  2A7T A;  1CN2 A;  1I6F A;  1BK8 A;  1T7B A;  2KPY A;  2LT8 A;  4AB0 A;  2B3C A;  1T0Z A;  2N66 A;  1PTX A;  2KBJ A;  4KYP A;  1MYN A;  4HE7 A;  1LQH A;  2GL1 A;  1NE5 A;  1BMR A;  1NH5 A;  4UJ0 A;  1ZU3 A;  2E3F A;  1B7D A;  2E3G A;  1JZA A;  1PX9 A;  1VNB A;  2N69 A;  2BRZ A;  2LR3 A;  2YC1 C;  1TI5 A;  5CY0 A;  2ASC A;  1BRZ A;  1B3C A;  1DJT A;  1ZVE A;  2KYQ A;  1LQQ A;  1SN1 A;  1WWN A;  4V1D C;  1NRA A;  1FH3 A;  1JXC A;  1I6G A;  1ICA A;  2KGQ A;  2LJM A;  2LY6 A;  2KBH A;  4HHF A;  1OZZ A;  1DQ7 A;  1T1T A;  1I2U A;  1WMT A;  2E0H A;  1C55 A;  2LKB A;  2LI7 A;  2I61 A;  1PE4 A;  2KJA A;  3E7U X;  1AYJ A;  1JKZ A;  1T7A A;  1P0A A;  2KSK A;  1WT7 A;  2KBK A;  2MZ0 A;  2N2Q A; 
#chains in the Genus database with same CATH topology
 4H5V A;  1UGL A;  1JZB A;  5AQX A;  1HPM A;  5EY4 A;  5AQG A;  2QW9 A;  1L4V A;  5F0X A;  2NY8 X;  4KBO A;  1I2V A;  3CQX A;  2M8B B;  1MR4 A;  1NGG A;  2YBR C;  1NGE A;  5AQY A;  3L4I A;  1GPT A;  2N2R A;  3KOZ A;  2ATB A;  1ZFU A;  4GNI A;  2YEO A;  1VNA A;  1NPI A;  3KOY A;  1BCG A;  1QQN A;  1AHO A;  1T7E A;  4AEI A;  1GPS A;  2YIO A;  2LY5 A;  2QWQ A;  3I33 A;  3M3Z A;  3IUC A;  3JXU A;  5AQS A;  4CQK A;  3FZH A;  5KK4 A;  1NGJ A;  2QWO A;  1KAZ A;  3PSM A;  5BPN A;  5AQR A;  1ZYW A;  1ZYV A;  1S3X A;  1SN4 A;  5AQJ A;  5AQH A;  4H5W A;  1SNB A;  5EX5 A;  1OMY A;  2NY9 X;  1C56 A;  2QWL A;  1QQO A;  2LJ7 A;  4AAZ A;  4H5N A;  3E7R L;  1XRS B;  5AQN A;  1SEG A;  2BUP A;  1NGA A;  3QML A;  1ZVG A;  3QFU A;  3R2V A;  1NRB A;  1KV0 A;  5AQW A;  5EVZ A;  5AQT A;  5BN9 A;  2D56 A;  1N4N A;  1P00 A;  1BUP A;  1KAY A;  1NGC A;  1NGD A;  2E8A A;  1CHZ A;  2QWP A;  5AQU A;  1NGI A;  2VY6 A;  1LQI A;  2G2K A;  4FL9 A;  1BA1 A;  2B68 A;  2SN3 A;  3HSC A;  1ZUT A;  2A7T A;  3BK3 C;  3FE1 A;  1I6F A;  2QWR A;  3FZL A;  3SF4 D;  1CN2 A;  1BK8 A;  4UAF E;  1T7B A;  2KPY A;  2LT8 A;  5AQK A;  3KOX A;  4AB0 A;  2B3C A;  1T0Z A;  1DKG D;  3KC6 A;  3LDQ A;  3GKU A;  2N66 A;  1PTX A;  2KBJ A;  5AQP A;  2GMO A;  5AQI A;  1HJO A;  4UAD E;  4KYP A;  4UAE F;  2LN8 A;  1MYN A;  2KHO A;  3AY9 A;  1LQH A;  3D2F A;  2GL1 A;  4HE7 A;  5EXW A;  5FPD A;  1NE5 A;  5BPM A;  1BMR A;  5BN8 A;  1NH5 A;  1POI A;  3QI7 A;  5BPL A;  1NGH A;  4UJ0 A;  1ZU3 A;  2E3F A;  1B7D A;  2E3G A;  5AR0 A;  4HWI A;  3GDQ A;  1JZA A;  1ICA A;  1PX9 A;  5AQM A;  1VNB A;  2N69 A;  2JDQ D;  2E2F A;  3GL1 A;  5AQF A;  2BRZ A;  2LR3 A;  2YC1 C;  3D2F B;  1TI5 A;  3KVG A;  2ASC A;  5CY0 A;  3C7N A;  3L6Q A;  2V7Z A;  3FZK A;  1DJT A;  3A8Y A;  1NGF A;  3LDO A;  1ZVE A;  5AQV A;  1B3C A;  2KYQ A;  1LQQ A;  1SN1 A;  1KAX A;  1WWN A;  4H5R A;  4IO8 A;  1HX1 A;  1NRA A;  4V1D C;  3KP1 A;  3CW4 A;  3FZM A;  1FH3 A;  1JXC A;  3KHW A;  2QXL A;  2KGQ A;  2LJM A;  3L56 A;  3LDL A;  1I6G A;  5AQO A;  1ATR A;  1K8B A;  3D2E A;  1QQM A;  2LY6 A;  3LDN A;  5F1X A;  2KBH A;  4HHF A;  2MN5 A;  2MBK A;  1OZZ A;  2YIP A;  5FPN A;  1DQ7 A;  1BA0 A;  1T1T A;  2K35 A;  3C7N B;  3KP0 A;  1I2U A;  1ATS A;  3FZF A;  1WMT A;  5AQQ A;  2E0H A;  2QWN A;  2LKB A;  4FSV A;  1C55 A;  2QWM A;  3ATU A;  2LI7 A;  5FPE A;  3LDP A;  1NGB A;  2I61 A;  4H5T A;  3D2E B;  5AQL A;  5AQZ A;  1PE4 A;  2KJA A;  5F2R A;  3E7U X;  3QFP A;  1AYJ A;  1YUW A;  2E88 A;  5FPM A;  1JKZ A;  1T7A A;  1BRZ A;  1P0A A;  2KSK A;  3ATV A;  2YIL A;  1WT7 A;  3KOW A;  2KBK A;  2MZ0 A;  2N2Q A; 
#chains in the Genus database with same CATH homology
 1JZB A;  1L4V A;  2NY8 X;  1I2V A;  2M8B B;  1MR4 A;  2YBR C;  1GPT A;  2N2R A;  2ATB A;  1ZFU A;  2YEO A;  1VNA A;  1NPI A;  1BCG A;  1AHO A;  1T7E A;  4AEI A;  1GPS A;  2LY5 A;  4CQK A;  5KK4 A;  3PSM A;  1ZYW A;  1ZYV A;  1SN4 A;  1SNB A;  1OMY A;  2NY9 X;  1C56 A;  2LJ7 A;  4AAZ A;  3E7R L;  1SEG A;  1ZVG A;  1NRB A;  1KV0 A;  1N4N A;  1P00 A;  1CHZ A;  1LQI A;  2B68 A;  2SN3 A;  1ZUT A;  2A7T A;  1CN2 A;  1I6F A;  1BK8 A;  1T7B A;  2KPY A;  2LT8 A;  4AB0 A;  2B3C A;  1T0Z A;  2N66 A;  1PTX A;  2KBJ A;  4KYP A;  1MYN A;  4HE7 A;  1LQH A;  2GL1 A;  1NE5 A;  1BMR A;  1NH5 A;  4UJ0 A;  1ZU3 A;  2E3F A;  1B7D A;  2E3G A;  1JZA A;  1PX9 A;  1VNB A;  2N69 A;  2BRZ A;  2LR3 A;  2YC1 C;  1TI5 A;  5CY0 A;  2ASC A;  1BRZ A;  1B3C A;  1DJT A;  1ZVE A;  2KYQ A;  1LQQ A;  1SN1 A;  1WWN A;  4V1D C;  1NRA A;  1FH3 A;  1JXC A;  1I6G A;  1ICA A;  2KGQ A;  2LJM A;  2LY6 A;  2KBH A;  4HHF A;  1OZZ A;  1DQ7 A;  1T1T A;  1I2U A;  1WMT A;  2E0H A;  1C55 A;  2LKB A;  2LI7 A;  2I61 A;  1PE4 A;  2KJA A;  3E7U X;  1AYJ A;  1JKZ A;  1T7A A;  1P0A A;  2KSK A;  1WT7 A;  2KBK A;  2MZ0 A;  2N2Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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