2B3CA

Solution structure of a beta-neurotoxin from the new world scorpion centruroides sculpturatus ewing
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
64
structure length
64
Chain Sequence
KDGYLVEKTGCKKTCYKLGENDFCNRECKWKHIGGSYGYCYGFGCYCEGLPDSTQTWPLPNKTC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of a beta-neurotoxin from the New World scorpion Centruroides sculpturatus Ewing.
pubmed doi rcsb
molecule tags Toxin
molecule keywords PROTEIN (NEUROTOXIN CSE-I)
total genus 10
structure length 64
sequence length 64
ec nomenclature
pdb deposition date 1998-12-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00537 Toxin_3 Scorpion toxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 2b3cA00
1BCGA 2KPYA 2NY9X 5KK4A 2LI7A 1NRBA 1I6GA 1T0ZA 1ZUTA 1GPTA 2E3GA 2KBJA 1MR4A 1CHZA 1SN4A 2ASCA 1PE4A 2N66A 1I6FA 2E0HA 2E3FA 2KGQA 1AHOA 1ZU3A 2LY5A 1C55A 1OMYA 2I61A 1JZAA 2LR3A 1T1TA 1JXCA 1KV0A 2KBKA 2LJMA 2KJAA 1ZYVA 2KBHA 2LT8A 4HE7A 4AEIA 1P0AA 1LQQA 4AB0A 4KYPA 1SNBA 1OZZA 1T7AA 1VNBA 1NRAA 1MYNA 2NY8X 2B3CA 3PSMA 1B3CA 1I2UA 1NE5A 1LQHA 5CY0A 2YC1C 2M8BB 1AYJA 2KYQA 1P00A 1ICAA 1C56A 1B7DA 2YBRC 4CQKA 2A7TA 2SN3A 1WMTA 4V1DC 2YEOA 1VNAA 1PX9A 1ZYWA 4AAZA 3E7UX 1CN2A 1T7EA 1DQ7A 2KSKA 2B68A 2N2QA 1WWNA 3E7RL 1I2VA 1JZBA 2ATBA 4UJ0A 2BRZA 1DJTA 1PTXA 1GPSA 1BMRA 1LQIA 1ZFUA 2LY6A 1N4NA 2LKBA 1ZVEA 1FH3A 1BK8A 2N2RA 1TI5A 1T7BA 1SEGA 1ZVGA 2MZ0A 2N69A 1L4VA 2GL1A 1JKZA 1WT7A 1NH5A 4HHFA 2LJ7A 1NPIA 1BRZA 1SN1A
chains in the Genus database with same CATH superfamily
1BCGA 1HJOA 1NGIA 2KPYA 2KHOA 2NY9X 3KOXA 5FPDA 5KK4A 2LI7A 1NGBA 2MBKA 1HX1A 3KOYA 1NRBA 2QWRA 5AQOA 5AQMA 3LDOA 1I6GA 3KC6A 1T0ZA 3D2EB 1ZUTA 1HPMA 1NGDA 1NGEA 5FPNA 1GPTA 2V7ZA 2E3GA 2KBJA 3ATVA 3C7NB 3M3ZA 5F0XA 1MR4A 2LN8A 5AQJA 3QI7A 1CHZA 3CW4A 1BA1A 3QFPA 2QWQA 5AQRA 5AQWA 1SN4A 2ASCA 1PE4A 2E2FA 5FPMA 4HWIA 1NGAA 4UAFE 4H5TA 4IO8A 5AQUA 2N66A 3A8YA 1I6FA 2E0HA 2E3FA 2G2KA 5AQVA 2KGQA 1AHOA 1ZU3A 2LY5A 2QW9A 1OMYA 2I61A 3L6QA 1JZAA 3FZLA 3LDLA 2GMOA 3SF4D 2E88A 3AY9A 5AQPA 2LR3A 3KVGA 1C55A 1T1TA 1JXCA 5BPLA 1KV0A 1ATSA 5AQTA 5EVZA 2KBKA 2KJAA 2LJMA 1ZYVA 2KBHA 2YIOA 2LT8A 4HE7A 3GL1A 1P0AA 1LQQA 4AB0A 4AEIA 4KYPA 1SNBA 1OZZA 1T7AA 1VNBA 1NRAA 1MYNA 2NY8X 2B3CA 3PSMA 1B3CA 1I2UA 1NE5A 1QQMA 1POIA 1LQHA 1QQOA 3FZMA 5CY0A 5F2RA 1NGHA 2YC1C 2M8BB 5FPEA 4H5WA 1AYJA 3JXUA 5AQKA 1NGCA 2K35A 3GDQA 3R2VA 2KYQA 1P00A 4H5RA 4H5VA 1ICAA 1C56A 1NGJA 3LDQA 1B7DA 2YBRC 3D2FA 3KP1A 1YUWA 4CQKA 1NGGA 2A7TA 2SN3A 3LDNA 1WMTA 4V1DC 2YEOA 2QWNA 5AQYA 5BPMA 1KAZA 3FE1A 3FZKA 1VNAA 1PX9A 3IUCA 1ZYWA 1K8BA 5AQXA 4AAZA 5AR0A 3E7UX 1CN2A 1T7EA 1NGFA 3KOWA 1DQ7A 4FSVA 1XRSB 2QXLA 5AQLA 2KSKA 2B68A 3L4IA 2N2QA 2QWPA 1WWNA 5BN8A 1KAXA 3FZHA 1S3XA 2QWOA 5BPNA 3KP0A 1KAYA 5F1XA 3E7RL 3KHWA 2D56A 1I2VA 2BUPA 1JZBA 1QQNA 2ATBA 2YIPA 3CQXA 2YILA 4UJ0A 1DKGD 2QWMA 2VY6A 5AQNA 3D2FB 2BRZA 5AQFA 1DJTA 2MN5A 5BN9A 1ATRA 1PTXA 1GPSA 1BMRA 3QMLA 5AQGA 1LQIA 1ZFUA 2E8AA 2LY6A 1N4NA 5EY4A 2LKBA 3D2EA 1ZVEA 3L56A 2JDQD 1FH3A 4FL9A 1BK8A 2N2RA 1TI5A 1T7BA 3C7NA 1BA0A 1SEGA 4GNIA 5AQIA 3KOZA 3ATUA 5AQSA 1ZVGA 2MZ0A 4H5NA 2N69A 3BK3C 3QFUA 5AQHA 1L4VA 3HSCA 2GL1A 3GKUA 5EX5A 2QWLA 1WT7A 1BUPA 3FZFA 4UADE 1NH5A 1UGLA 1JKZA 4KBOA 5AQQA 4HHFA 2LJ7A 1NPIA 3LDPA 4UAEF 1BRZA 1SN1A 3I33A 5AQZA 5EXWA
chains in the Genus database with same CATH topology
1BCGA 2KPYA 2NY9X 5KK4A 2LI7A 1NRBA 1I6GA 1T0ZA 1ZUTA 1GPTA 2E3GA 2KBJA 1MR4A 1CHZA 1SN4A 2ASCA 1PE4A 2N66A 1I6FA 2E0HA 2E3FA 2KGQA 1AHOA 1ZU3A 2LY5A 1C55A 1OMYA 2I61A 1JZAA 2LR3A 1T1TA 1JXCA 1KV0A 2KBKA 2LJMA 2KJAA 1ZYVA 2KBHA 2LT8A 4HE7A 4AEIA 1P0AA 1LQQA 4AB0A 4KYPA 1SNBA 1OZZA 1T7AA 1VNBA 1NRAA 1MYNA 2NY8X 2B3CA 3PSMA 1B3CA 1I2UA 1NE5A 1LQHA 5CY0A 2YC1C 2M8BB 1AYJA 2KYQA 1P00A 1ICAA 1C56A 1B7DA 2YBRC 4CQKA 2A7TA 2SN3A 1WMTA 4V1DC 2YEOA 1VNAA 1PX9A 1ZYWA 4AAZA 3E7UX 1CN2A 1T7EA 1DQ7A 2KSKA 2B68A 2N2QA 1WWNA 3E7RL 1I2VA 1JZBA 2ATBA 4UJ0A 2BRZA 1DJTA 1PTXA 1GPSA 1BMRA 1LQIA 1ZFUA 2LY6A 1N4NA 2LKBA 1ZVEA 1FH3A 1BK8A 2N2RA 1TI5A 1T7BA 1SEGA 1ZVGA 2MZ0A 2N69A 1L4VA 2GL1A 1JKZA 1WT7A 1NH5A 4HHFA 2LJ7A 1NPIA 1BRZA 1SN1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BCG A;  2KPY A;  2NY9 X;  5KK4 A;  2LI7 A;  1NRB A;  1I6G A;  1T0Z A;  1ZUT A;  1GPT A;  2E3G A;  2KBJ A;  1MR4 A;  1CHZ A;  1SN4 A;  2ASC A;  1PE4 A;  2N66 A;  1I6F A;  2E0H A;  2E3F A;  2KGQ A;  1AHO A;  1ZU3 A;  2LY5 A;  1C55 A;  1OMY A;  2I61 A;  1JZA A;  2LR3 A;  1T1T A;  1JXC A;  1KV0 A;  2KBK A;  2LJM A;  2KJA A;  1ZYV A;  2KBH A;  2LT8 A;  4HE7 A;  4AEI A;  1P0A A;  1LQQ A;  4AB0 A;  4KYP A;  1SNB A;  1OZZ A;  1T7A A;  1VNB A;  1NRA A;  1MYN A;  2NY8 X;  2B3C A;  3PSM A;  1B3C A;  1I2U A;  1NE5 A;  1LQH A;  5CY0 A;  2YC1 C;  2M8B B;  1AYJ A;  2KYQ A;  1P00 A;  1ICA A;  1C56 A;  1B7D A;  2YBR C;  4CQK A;  2A7T A;  2SN3 A;  1WMT A;  4V1D C;  2YEO A;  1VNA A;  1PX9 A;  1ZYW A;  4AAZ A;  3E7U X;  1CN2 A;  1T7E A;  1DQ7 A;  2KSK A;  2B68 A;  2N2Q A;  1WWN A;  3E7R L;  1I2V A;  1JZB A;  2ATB A;  4UJ0 A;  2BRZ A;  1DJT A;  1PTX A;  1GPS A;  1BMR A;  1LQI A;  1ZFU A;  2LY6 A;  1N4N A;  2LKB A;  1ZVE A;  1FH3 A;  1BK8 A;  2N2R A;  1TI5 A;  1T7B A;  1SEG A;  1ZVG A;  2MZ0 A;  2N69 A;  1L4V A;  2GL1 A;  1JKZ A;  1WT7 A;  1NH5 A;  4HHF A;  2LJ7 A;  1NPI A;  1BRZ A;  1SN1 A; 
#chains in the Genus database with same CATH topology
 1BCG A;  1HJO A;  1NGI A;  2KPY A;  2KHO A;  2NY9 X;  3KOX A;  5FPD A;  5KK4 A;  2LI7 A;  1NGB A;  2MBK A;  1HX1 A;  3KOY A;  1NRB A;  2QWR A;  5AQO A;  5AQM A;  3LDO A;  1I6G A;  3KC6 A;  1T0Z A;  3D2E B;  1ZUT A;  1HPM A;  1NGD A;  1NGE A;  5FPN A;  1GPT A;  2V7Z A;  2E3G A;  2KBJ A;  3ATV A;  3C7N B;  3M3Z A;  5F0X A;  1MR4 A;  2LN8 A;  5AQJ A;  3QI7 A;  1CHZ A;  3CW4 A;  1BA1 A;  3QFP A;  2QWQ A;  5AQR A;  5AQW A;  1SN4 A;  2ASC A;  1PE4 A;  2E2F A;  5FPM A;  4HWI A;  1NGA A;  4UAF E;  4H5T A;  4IO8 A;  5AQU A;  2N66 A;  3A8Y A;  1I6F A;  2E0H A;  2E3F A;  2G2K A;  5AQV A;  2KGQ A;  1AHO A;  1ZU3 A;  2LY5 A;  2QW9 A;  1OMY A;  2I61 A;  3L6Q A;  1JZA A;  3FZL A;  3LDL A;  2GMO A;  3SF4 D;  2E88 A;  3AY9 A;  5AQP A;  2LR3 A;  3KVG A;  1C55 A;  1T1T A;  1JXC A;  5BPL A;  1KV0 A;  1ATS A;  5AQT A;  5EVZ A;  2KBK A;  2KJA A;  2LJM A;  1ZYV A;  2KBH A;  2YIO A;  2LT8 A;  4HE7 A;  3GL1 A;  1P0A A;  1LQQ A;  4AB0 A;  4AEI A;  4KYP A;  1SNB A;  1OZZ A;  1T7A A;  1VNB A;  1NRA A;  1MYN A;  2NY8 X;  2B3C A;  3PSM A;  1B3C A;  1I2U A;  1NE5 A;  1QQM A;  1POI A;  1LQH A;  1QQO A;  3FZM A;  5CY0 A;  5F2R A;  1NGH A;  2YC1 C;  2M8B B;  5FPE A;  4H5W A;  1AYJ A;  3JXU A;  5AQK A;  1NGC A;  2K35 A;  3GDQ A;  3R2V A;  2KYQ A;  1P00 A;  4H5R A;  4H5V A;  1ICA A;  1C56 A;  1NGJ A;  3LDQ A;  1B7D A;  2YBR C;  3D2F A;  3KP1 A;  1YUW A;  4CQK A;  1NGG A;  2A7T A;  2SN3 A;  3LDN A;  1WMT A;  4V1D C;  2YEO A;  2QWN A;  5AQY A;  5BPM A;  1KAZ A;  3FE1 A;  3FZK A;  1VNA A;  1PX9 A;  3IUC A;  1ZYW A;  1K8B A;  5AQX A;  4AAZ A;  5AR0 A;  3E7U X;  1CN2 A;  1T7E A;  1NGF A;  3KOW A;  1DQ7 A;  4FSV A;  1XRS B;  2QXL A;  5AQL A;  2KSK A;  2B68 A;  3L4I A;  2N2Q A;  2QWP A;  1WWN A;  5BN8 A;  1KAX A;  3FZH A;  1S3X A;  2QWO A;  5BPN A;  3KP0 A;  1KAY A;  5F1X A;  3E7R L;  3KHW A;  2D56 A;  1I2V A;  2BUP A;  1JZB A;  1QQN A;  2ATB A;  2YIP A;  3CQX A;  2YIL A;  4UJ0 A;  1DKG D;  2QWM A;  2VY6 A;  5AQN A;  3D2F B;  2BRZ A;  5AQF A;  1DJT A;  2MN5 A;  5BN9 A;  1ATR A;  1PTX A;  1GPS A;  1BMR A;  3QML A;  5AQG A;  1LQI A;  1ZFU A;  2E8A A;  2LY6 A;  1N4N A;  5EY4 A;  2LKB A;  3D2E A;  1ZVE A;  3L56 A;  2JDQ D;  1FH3 A;  4FL9 A;  1BK8 A;  2N2R A;  1TI5 A;  1T7B A;  3C7N A;  1BA0 A;  1SEG A;  4GNI A;  5AQI A;  3KOZ A;  3ATU A;  5AQS A;  1ZVG A;  2MZ0 A;  4H5N A;  2N69 A;  3BK3 C;  3QFU A;  5AQH A;  1L4V A;  3HSC A;  2GL1 A;  3GKU A;  5EX5 A;  2QWL A;  1WT7 A;  1BUP A;  3FZF A;  4UAD E;  1NH5 A;  1UGL A;  1JKZ A;  4KBO A;  5AQQ A;  4HHF A;  2LJ7 A;  1NPI A;  3LDP A;  4UAE F;  1BRZ A;  1SN1 A;  3I33 A;  5AQZ A;  5EXW A; 
#chains in the Genus database with same CATH homology
 1BCG A;  2KPY A;  2NY9 X;  5KK4 A;  2LI7 A;  1NRB A;  1I6G A;  1T0Z A;  1ZUT A;  1GPT A;  2E3G A;  2KBJ A;  1MR4 A;  1CHZ A;  1SN4 A;  2ASC A;  1PE4 A;  2N66 A;  1I6F A;  2E0H A;  2E3F A;  2KGQ A;  1AHO A;  1ZU3 A;  2LY5 A;  1C55 A;  1OMY A;  2I61 A;  1JZA A;  2LR3 A;  1T1T A;  1JXC A;  1KV0 A;  2KBK A;  2LJM A;  2KJA A;  1ZYV A;  2KBH A;  2LT8 A;  4HE7 A;  4AEI A;  1P0A A;  1LQQ A;  4AB0 A;  4KYP A;  1SNB A;  1OZZ A;  1T7A A;  1VNB A;  1NRA A;  1MYN A;  2NY8 X;  2B3C A;  3PSM A;  1B3C A;  1I2U A;  1NE5 A;  1LQH A;  5CY0 A;  2YC1 C;  2M8B B;  1AYJ A;  2KYQ A;  1P00 A;  1ICA A;  1C56 A;  1B7D A;  2YBR C;  4CQK A;  2A7T A;  2SN3 A;  1WMT A;  4V1D C;  2YEO A;  1VNA A;  1PX9 A;  1ZYW A;  4AAZ A;  3E7U X;  1CN2 A;  1T7E A;  1DQ7 A;  2KSK A;  2B68 A;  2N2Q A;  1WWN A;  3E7R L;  1I2V A;  1JZB A;  2ATB A;  4UJ0 A;  2BRZ A;  1DJT A;  1PTX A;  1GPS A;  1BMR A;  1LQI A;  1ZFU A;  2LY6 A;  1N4N A;  2LKB A;  1ZVE A;  1FH3 A;  1BK8 A;  2N2R A;  1TI5 A;  1T7B A;  1SEG A;  1ZVG A;  2MZ0 A;  2N69 A;  1L4V A;  2GL1 A;  1JKZ A;  1WT7 A;  1NH5 A;  4HHF A;  2LJ7 A;  1NPI A;  1BRZ A;  1SN1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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