2BRZA

Solution nmr structure of the sweet protein brazzein, minimized average structure
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
54
structure length
54
Chain Sequence
EDKCKKVYENYPVSKCQLANQCNYDCKLDKHARSGECFYDEKRNLQCICDYCEY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution structure of the thermostable sweet-tasting protein brazzein.
pubmed doi rcsb
molecule tags Sweet protein
molecule keywords BRAZZEIN
total genus 7
structure length 54
sequence length 54
ec nomenclature
pdb deposition date 1998-04-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 2brzA00
1BMRA 4HHFA 1CN2A 4UJ0A 2KPYA 2LY5A 1WT7A 1P00A 1BCGA 2KBKA 1ZVGA 2KGQA 1MYNA 2LKBA 2N66A 1GPSA 1JZBA 1MR4A 1PE4A 2ASCA 1NRBA 5CY0A 2A7TA 1LQIA 1ZYVA 1SN1A 1BK8A 1I6GA 2B68A 1ZU3A 1C56A 1OMYA 1T1TA 4AEIA 2N2QA 1JZAA 3E7RL 1C55A 2LJMA 1DJTA 1ZYWA 2YC1C 1PX9A 1AYJA 1N4NA 2E3GA 1LQHA 2E0HA 5KK4A 2LT8A 2N2RA 1I6FA 4KYPA 2M8BB 1T7AA 4V1DC 2YEOA 2ATBA 1T0ZA 1ICAA 1LQQA 1WWNA 1I2VA 2LY6A 1VNBA 2KJAA 1NPIA 1DQ7A 1P0AA 3PSMA 1KV0A 1B7DA 2I61A 1GPTA 2LI7A 3E7UX 2B3CA 1T7BA 2E3FA 1ZUTA 1VNAA 1ZVEA 4AAZA 1B3CA 2KYQA 2SN3A 1OZZA 1T7EA 2KBJA 4CQKA 4HE7A 1NH5A 4AB0A 2BRZA 2YBRC 1ZFUA 1SEGA 1NE5A 2GL1A 1I2UA 1SN4A 2LJ7A 2KBHA 1SNBA 1NRAA 1JKZA 1L4VA 1CHZA 2NY8X 1WMTA 1TI5A 2NY9X 1JXCA 2LR3A 1AHOA 1PTXA 2KSKA 2N69A 2MZ0A 1FH3A 1BRZA
chains in the Genus database with same CATH superfamily
3D2FA 4UADE 1BMRA 4HHFA 4UAFE 3GL1A 5FPMA 1CN2A 1BUPA 4UJ0A 3C7NB 2KPYA 4KBOA 5FPEA 5KK4A 5F1XA 2LY5A 3SF4D 1WT7A 2QWMA 5AQHA 5AQLA 1P00A 1BCGA 2QWRA 2KBKA 3I33A 3LDPA 5AQFA 1ZVGA 1HPMA 1KAYA 2KGQA 1QQMA 1MYNA 2LKBA 2YIOA 3LDNA 5EVZA 2N66A 1GPSA 1JZBA 1MR4A 3FZFA 4H5WA 2QW9A 4FSVA 1PE4A 2ASCA 2BUPA 1NRBA 5AQZA 2E88A 5CY0A 2LN8A 4UAEF 1KAXA 2A7TA 5BPLA 1LQIA 3AY9A 1ZYVA 3D2FB 1SN1A 3KC6A 1QQNA 1POIA 2D56A 4IO8A 1BK8A 1I6GA 3FE1A 2YIPA 3KOZA 2B68A 2MN5A 1XRSB 3GDQA 3L6QA 3KOYA 1ZU3A 5F2RA 1C56A 1OMYA 1T1TA 5EX5A 4AEIA 2N2QA 3R2VA 1JZAA 4H5RA 3E7RL 5AQQA 5AQIA 5AQNA 2MBKA 1C55A 2LJMA 4FL9A 3KP1A 5AR0A 5AQWA 1DJTA 1BRZA 1ZYWA 2YC1C 1PX9A 3QFUA 1N4NA 1AYJA 2QWOA 2E2FA 1LQHA 2E0HA 2E3GA 3LDOA 2LT8A 2N2RA 1I6FA 1ATRA 2JDQD 1NGDA 3KP0A 4KYPA 5AQKA 5AQJA 5AQPA 5AQRA 2M8BB 1T7AA 5AQSA 4H5TA 4V1DC 3LDLA 2YEOA 3CW4A 5BPMA 2QWPA 2ATBA 1T0ZA 1NGBA 5BN9A 1ICAA 4HWIA 3JXUA 1LQQA 2QXLA 2E8AA 4H5VA 1WWNA 5AQYA 2LY6A 1I2VA 3KOXA 3KVGA 1NGCA 1VNBA 2KJAA 1NGEA 1NPIA 1ATSA 1DQ7A 1QQOA 1P0AA 3PSMA 2QWNA 3QFPA 3D2EA 1KV0A 1B7DA 2I61A 3IUCA 1GPTA 2K35A 2LI7A 2QWLA 3E7UX 3QMLA 2B3CA 1T7BA 2V7ZA 3LDQA 5F0XA 2E3FA 3L56A 3FZHA 4GNIA 1ZUTA 1VNAA 1ZVEA 4AAZA 2G2KA 1B3CA 5AQMA 3A8YA 4H5NA 5EY4A 2KYQA 2SN3A 1OZZA 5AQTA 1T7EA 3CQXA 2KBJA 4CQKA 4HE7A 1NH5A 2KHOA 1BA0A 2BRZA 2YBRC 1S3XA 1ZFUA 3KOWA 1NGFA 1NGAA 1UGLA 3FZMA 3C7NA 5EXWA 3FZLA 1SEGA 1KAZA 1NE5A 2GL1A 3ATUA 3D2EB 1NGHA 3L4IA 1BA1A 1SN4A 2LJ7A 3HSCA 1HJOA 1I2UA 2KBHA 3QI7A 1NGJA 1YUWA 3M3ZA 5AQGA 5AQVA 1NGGA 2QWQA 5FPDA 1SNBA 1NRAA 3GKUA 2GMOA 1JKZA 5AQXA 2YILA 5FPNA 1K8BA 1L4VA 3FZKA 4AB0A 1CHZA 2NY8X 1WMTA 1HX1A 1TI5A 2NY9X 1JXCA 5BPNA 2LR3A 1AHOA 1NGIA 1PTXA 2KSKA 2N69A 2MZ0A 3KHWA 5AQOA 5BN8A 3BK3C 1FH3A 2VY6A 1DKGD 5AQUA 3ATVA
chains in the Genus database with same CATH topology
1BMRA 4HHFA 1CN2A 4UJ0A 2KPYA 2LY5A 1WT7A 1P00A 1BCGA 2KBKA 1ZVGA 2KGQA 1MYNA 2LKBA 2N66A 1GPSA 1JZBA 1MR4A 1PE4A 2ASCA 1NRBA 5CY0A 2A7TA 1LQIA 1ZYVA 1SN1A 1BK8A 1I6GA 2B68A 1ZU3A 1C56A 1OMYA 1T1TA 4AEIA 2N2QA 1JZAA 3E7RL 1C55A 2LJMA 1DJTA 1ZYWA 2YC1C 1PX9A 1AYJA 1N4NA 2E3GA 1LQHA 2E0HA 5KK4A 2LT8A 2N2RA 1I6FA 4KYPA 2M8BB 1T7AA 4V1DC 2YEOA 2ATBA 1T0ZA 1ICAA 1LQQA 1WWNA 1I2VA 2LY6A 1VNBA 2KJAA 1NPIA 1DQ7A 1P0AA 3PSMA 1KV0A 1B7DA 2I61A 1GPTA 2LI7A 3E7UX 2B3CA 1T7BA 2E3FA 1ZUTA 1VNAA 1ZVEA 4AAZA 1B3CA 2KYQA 2SN3A 1OZZA 1T7EA 2KBJA 4CQKA 4HE7A 1NH5A 4AB0A 2BRZA 2YBRC 1ZFUA 1SEGA 1NE5A 2GL1A 1I2UA 1SN4A 2LJ7A 2KBHA 1SNBA 1NRAA 1JKZA 1L4VA 1CHZA 2NY8X 1WMTA 1TI5A 2NY9X 1JXCA 2LR3A 1AHOA 1PTXA 2KSKA 2N69A 2MZ0A 1FH3A 1BRZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BMR A;  4HHF A;  1CN2 A;  4UJ0 A;  2KPY A;  2LY5 A;  1WT7 A;  1P00 A;  1BCG A;  2KBK A;  1ZVG A;  2KGQ A;  1MYN A;  2LKB A;  2N66 A;  1GPS A;  1JZB A;  1MR4 A;  1PE4 A;  2ASC A;  1NRB A;  5CY0 A;  2A7T A;  1LQI A;  1ZYV A;  1SN1 A;  1BK8 A;  1I6G A;  2B68 A;  1ZU3 A;  1C56 A;  1OMY A;  1T1T A;  4AEI A;  2N2Q A;  1JZA A;  3E7R L;  1C55 A;  2LJM A;  1DJT A;  1ZYW A;  2YC1 C;  1PX9 A;  1AYJ A;  1N4N A;  2E3G A;  1LQH A;  2E0H A;  5KK4 A;  2LT8 A;  2N2R A;  1I6F A;  4KYP A;  2M8B B;  1T7A A;  4V1D C;  2YEO A;  2ATB A;  1T0Z A;  1ICA A;  1LQQ A;  1WWN A;  1I2V A;  2LY6 A;  1VNB A;  2KJA A;  1NPI A;  1DQ7 A;  1P0A A;  3PSM A;  1KV0 A;  1B7D A;  2I61 A;  1GPT A;  2LI7 A;  3E7U X;  2B3C A;  1T7B A;  2E3F A;  1ZUT A;  1VNA A;  1ZVE A;  4AAZ A;  1B3C A;  2KYQ A;  2SN3 A;  1OZZ A;  1T7E A;  2KBJ A;  4CQK A;  4HE7 A;  1NH5 A;  4AB0 A;  2BRZ A;  2YBR C;  1ZFU A;  1SEG A;  1NE5 A;  2GL1 A;  1I2U A;  1SN4 A;  2LJ7 A;  2KBH A;  1SNB A;  1NRA A;  1JKZ A;  1L4V A;  1CHZ A;  2NY8 X;  1WMT A;  1TI5 A;  2NY9 X;  1JXC A;  2LR3 A;  1AHO A;  1PTX A;  2KSK A;  2N69 A;  2MZ0 A;  1FH3 A;  1BRZ A; 
#chains in the Genus database with same CATH topology
 3D2F A;  4UAD E;  1BMR A;  4HHF A;  4UAF E;  3GL1 A;  5FPM A;  1CN2 A;  1BUP A;  4UJ0 A;  3C7N B;  2KPY A;  4KBO A;  5FPE A;  5KK4 A;  5F1X A;  2LY5 A;  3SF4 D;  1WT7 A;  2QWM A;  5AQH A;  5AQL A;  1P00 A;  1BCG A;  2QWR A;  2KBK A;  3I33 A;  3LDP A;  5AQF A;  1ZVG A;  1HPM A;  1KAY A;  2KGQ A;  1QQM A;  1MYN A;  2LKB A;  2YIO A;  3LDN A;  5EVZ A;  2N66 A;  1GPS A;  1JZB A;  1MR4 A;  3FZF A;  4H5W A;  2QW9 A;  4FSV A;  1PE4 A;  2ASC A;  2BUP A;  1NRB A;  5AQZ A;  2E88 A;  5CY0 A;  2LN8 A;  4UAE F;  1KAX A;  2A7T A;  5BPL A;  1LQI A;  3AY9 A;  1ZYV A;  3D2F B;  1SN1 A;  3KC6 A;  1QQN A;  1POI A;  2D56 A;  4IO8 A;  1BK8 A;  1I6G A;  3FE1 A;  2YIP A;  3KOZ A;  2B68 A;  2MN5 A;  1XRS B;  3GDQ A;  3L6Q A;  3KOY A;  1ZU3 A;  5F2R A;  1C56 A;  1OMY A;  1T1T A;  5EX5 A;  4AEI A;  2N2Q A;  3R2V A;  1JZA A;  4H5R A;  3E7R L;  5AQQ A;  5AQI A;  5AQN A;  2MBK A;  1C55 A;  2LJM A;  4FL9 A;  3KP1 A;  5AR0 A;  5AQW A;  1DJT A;  1BRZ A;  1ZYW A;  2YC1 C;  1PX9 A;  3QFU A;  1N4N A;  1AYJ A;  2QWO A;  2E2F A;  1LQH A;  2E0H A;  2E3G A;  3LDO A;  2LT8 A;  2N2R A;  1I6F A;  1ATR A;  2JDQ D;  1NGD A;  3KP0 A;  4KYP A;  5AQK A;  5AQJ A;  5AQP A;  5AQR A;  2M8B B;  1T7A A;  5AQS A;  4H5T A;  4V1D C;  3LDL A;  2YEO A;  3CW4 A;  5BPM A;  2QWP A;  2ATB A;  1T0Z A;  1NGB A;  5BN9 A;  1ICA A;  4HWI A;  3JXU A;  1LQQ A;  2QXL A;  2E8A A;  4H5V A;  1WWN A;  5AQY A;  2LY6 A;  1I2V A;  3KOX A;  3KVG A;  1NGC A;  1VNB A;  2KJA A;  1NGE A;  1NPI A;  1ATS A;  1DQ7 A;  1QQO A;  1P0A A;  3PSM A;  2QWN A;  3QFP A;  3D2E A;  1KV0 A;  1B7D A;  2I61 A;  3IUC A;  1GPT A;  2K35 A;  2LI7 A;  2QWL A;  3E7U X;  3QML A;  2B3C A;  1T7B A;  2V7Z A;  3LDQ A;  5F0X A;  2E3F A;  3L56 A;  3FZH A;  4GNI A;  1ZUT A;  1VNA A;  1ZVE A;  4AAZ A;  2G2K A;  1B3C A;  5AQM A;  3A8Y A;  4H5N A;  5EY4 A;  2KYQ A;  2SN3 A;  1OZZ A;  5AQT A;  1T7E A;  3CQX A;  2KBJ A;  4CQK A;  4HE7 A;  1NH5 A;  2KHO A;  1BA0 A;  2BRZ A;  2YBR C;  1S3X A;  1ZFU A;  3KOW A;  1NGF A;  1NGA A;  1UGL A;  3FZM A;  3C7N A;  5EXW A;  3FZL A;  1SEG A;  1KAZ A;  1NE5 A;  2GL1 A;  3ATU A;  3D2E B;  1NGH A;  3L4I A;  1BA1 A;  1SN4 A;  2LJ7 A;  3HSC A;  1HJO A;  1I2U A;  2KBH A;  3QI7 A;  1NGJ A;  1YUW A;  3M3Z A;  5AQG A;  5AQV A;  1NGG A;  2QWQ A;  5FPD A;  1SNB A;  1NRA A;  3GKU A;  2GMO A;  1JKZ A;  5AQX A;  2YIL A;  5FPN A;  1K8B A;  1L4V A;  3FZK A;  4AB0 A;  1CHZ A;  2NY8 X;  1WMT A;  1HX1 A;  1TI5 A;  2NY9 X;  1JXC A;  5BPN A;  2LR3 A;  1AHO A;  1NGI A;  1PTX A;  2KSK A;  2N69 A;  2MZ0 A;  3KHW A;  5AQO A;  5BN8 A;  3BK3 C;  1FH3 A;  2VY6 A;  1DKG D;  5AQU A;  3ATV A; 
#chains in the Genus database with same CATH homology
 1BMR A;  4HHF A;  1CN2 A;  4UJ0 A;  2KPY A;  2LY5 A;  1WT7 A;  1P00 A;  1BCG A;  2KBK A;  1ZVG A;  2KGQ A;  1MYN A;  2LKB A;  2N66 A;  1GPS A;  1JZB A;  1MR4 A;  1PE4 A;  2ASC A;  1NRB A;  5CY0 A;  2A7T A;  1LQI A;  1ZYV A;  1SN1 A;  1BK8 A;  1I6G A;  2B68 A;  1ZU3 A;  1C56 A;  1OMY A;  1T1T A;  4AEI A;  2N2Q A;  1JZA A;  3E7R L;  1C55 A;  2LJM A;  1DJT A;  1ZYW A;  2YC1 C;  1PX9 A;  1AYJ A;  1N4N A;  2E3G A;  1LQH A;  2E0H A;  5KK4 A;  2LT8 A;  2N2R A;  1I6F A;  4KYP A;  2M8B B;  1T7A A;  4V1D C;  2YEO A;  2ATB A;  1T0Z A;  1ICA A;  1LQQ A;  1WWN A;  1I2V A;  2LY6 A;  1VNB A;  2KJA A;  1NPI A;  1DQ7 A;  1P0A A;  3PSM A;  1KV0 A;  1B7D A;  2I61 A;  1GPT A;  2LI7 A;  3E7U X;  2B3C A;  1T7B A;  2E3F A;  1ZUT A;  1VNA A;  1ZVE A;  4AAZ A;  1B3C A;  2KYQ A;  2SN3 A;  1OZZ A;  1T7E A;  2KBJ A;  4CQK A;  4HE7 A;  1NH5 A;  4AB0 A;  2BRZ A;  2YBR C;  1ZFU A;  1SEG A;  1NE5 A;  2GL1 A;  1I2U A;  1SN4 A;  2LJ7 A;  2KBH A;  1SNB A;  1NRA A;  1JKZ A;  1L4V A;  1CHZ A;  2NY8 X;  1WMT A;  1TI5 A;  2NY9 X;  1JXC A;  2LR3 A;  1AHO A;  1PTX A;  2KSK A;  2N69 A;  2MZ0 A;  1FH3 A;  1BRZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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