2D56 | Genus

Total Genus 10

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	10
sequence length	53
structure length	53
Chain Sequence	AVDFSSCARMDVPGLSKVAQGLCISSCKFQNCGTGHCEKRGGRPTCVCDRCGR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Antibiotic
source organism	Ascaris suum
publication title	Solution structure and function of ASABFd18c, antibacterial peptide isolated from a nematode, asucaris suum rcsb
molecule keywords	ASABF
total genus	10
structure length	53
sequence length	53
ec nomenclature
pdb deposition date	2005-10-28

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.30.110	Alpha Beta	2-Layer Sandwich	Defensin A-like	Defensin A-like	2d56A00

2D56A
chains in the Genus database with same CATH superfamily

1T7AA 2E2FA 2KGQA 1ZU3A 2YILA 3L4IA 5F1XA 1LQHA 1XRSB 3CQXA 4KYPA 1T7BA 3LDPA 2MBKA 1N4NA 2QWQA 3M3ZA 1T1TA 1MYNA 4V1DC 1SN4A 2ASCA 1CHZA 2I61A 2LKBA 2LI7A 4CQKA 5FPEA 2LT8A 2LJMA 1K8BA 1QQMA 3ATVA 1C55A 3BK3C 2KBJA 3C7NB 1QQOA 3FZFA 1MR4A 3CW4A 5BPNA 2G2KA 5BN8A 2A7TA 4H5RA 5AQPA 1DKGD 1KAXA 2YBRC 4GNIA 3C7NA 1ATSA 2KPYA 3FZHA 4HHFA 5AQJA 2KSKA 4H5WA 1JXCA 5FPNA 1BK8A 4KBOA 1SEGA 3E7RL 2QW9A 3KOWA 1BRZA 3FZLA 1B7DA 2MZ0A 4HE7A 2GMOA 5AQZA 1NH5A 1ZVGA 2JDQD 2LY6A 5AQTA 1I2UA 2LR3A 1CN2A 1WT7A 2KHOA 1ZUTA 3KP0A 3LDOA 4H5NA 1NGEA 3D2EB 5FPMA 4H5TA 1P00A 3FE1A 5AQKA 2D56A 5AQYA 5AQSA 2YEOA 1OMYA 3D2EA 1BCGA 5EVZA 2LY5A 1UGLA 2GL1A 2YIOA 1KV0A 4AEIA 1L4VA 5EXWA 1T0ZA 4UAFE 2B68A 2E88A 4UAEF 1QQNA 1ZFUA 1KAZA 2E8AA 2YIPA 3L56A 5AR0A 4IO8A 1I2VA 3KOYA 1P0AA 1PTXA 1S3XA 2MN5A 1NE5A 2NY9X 2LJ7A 1WMTA 3KP1A 2N69A 2QWMA 3GL1A 1B3CA 1NGDA 3LDQA 5AQNA 1HX1A 2E3GA 3I33A 3KOZA 1TI5A 2NY8X 3KOXA 4UJ0A 3L6QA 2QWNA 3QMLA 2KYQA 5EX5A 5AQOA 3PSMA 1BUPA 5KK4A 5AQMA 5AQXA 3FZKA 1AHOA 2E3FA 1BMRA 3R2VA 5FPDA 4HWIA 2N66A 3QFPA 5AQHA 2YC1C 1NGGA 3QFUA 1ZYWA 2BUPA 2B3CA 1LQIA 2LN8A 1NRBA 3D2FB 5BPMA 1JKZA 1NGHA 3SF4D 2QWPA 3E7UX 2N2RA 3LDLA 3D2FA 3HSCA 5AQVA 1BA0A 1FH3A 4AAZA 1NGJA 1HJOA 1NRAA 2ATBA 5AQUA 1LQQA 1DQ7A 5F0XA 2QWLA 3QI7A 5AQQA 1YUWA 1VNBA 1NGFA 3AY9A 1JZAA 1JZBA 2E0HA 1I6GA 2QXLA 1C56A 2KBKA 1SNBA 1I6FA 5CY0A 1ZYVA 3ATUA 5BPLA 4FL9A 5AQFA 1KAYA 3LDNA 1T7EA 1ICAA 2SN3A 3A8YA 2QWRA 5AQIA 1DJTA 1GPTA 4FSVA 1NGIA 5EY4A 1NGAA 5AQWA 1SN1A 2V7ZA 2QWOA 5AQGA 5F2RA 1PX9A 3KVGA 5AQLA 1AYJA 4H5VA 1ATRA 3GKUA 2KBHA 3JXUA 3KC6A 1NGBA 1WWNA 1ZVEA 2BRZA 5AQRA 1NPIA 4AB0A 1NGCA 5BN9A 2N2QA 4UADE 1BA1A 2K35A 3FZMA 1GPSA 2VY6A 1PE4A 3GDQA 1HPMA 1POIA 2KJAA 3IUCA 3KHWA 1OZZA 2M8BB 1VNAA
chains in the Genus database with same CATH topology

2E2FA 2YILA 3L4IA 5F1XA 3CQXA 3LDPA 2MBKA 2QWQA 3M3ZA 5FPEA 3ATVA 3BK3C 3C7NB 3FZFA 1QQOA 3CW4A 5BPNA 5BN8A 5AQPA 4H5RA 1DKGD 1KAXA 4GNIA 3C7NA 1ATSA 3FZHA 5AQJA 4H5WA 4KBOA 2QW9A 3FZLA 2GMOA 5AQZA 2JDQD 5AQTA 2KHOA 3LDOA 4H5NA 1NGEA 3D2EB 5FPMA 4H5TA 3FE1A 5AQKA 2D56A 5AQYA 5AQSA 3D2EA 5EVZA 2YIOA 5EXWA 4UAFE 2E88A 4UAEF 1QQNA 2E8AA 1KAZA 2YIPA 3L56A 5AR0A 4IO8A 1S3XA 2MN5A 2QWMA 3GL1A 1NGDA 3LDQA 5AQNA 1HX1A 3I33A 3L6QA 2QWNA 3QMLA 5EX5A 5AQOA 1BUPA 5AQMA 5AQXA 3FZKA 3R2VA 5FPDA 4HWIA 3QFPA 5AQHA 1NGGA 3QFUA 2BUPA 2LN8A 5BPMA 3D2FB 1NGHA 3SF4D 2QWPA 3LDLA 3D2FA 3HSCA 5AQVA 1BA0A 1NGJA 1HJOA 5AQUA 5F0XA 2QWLA 3QI7A 5AQQA 1YUWA 3AY9A 1NGFA 2QXLA 3ATUA 5BPLA 4FL9A 5AQFA 1KAYA 3LDNA 3A8YA 2QWRA 5AQIA 4FSVA 1NGIA 5EY4A 1NGAA 5AQWA 2V7ZA 2QWOA 5AQGA 5F2RA 3KVGA 5AQLA 4H5VA 1ATRA 3KC6A 3JXUA 1NGBA 5AQRA 1NGCA 5BN9A 4UADE 1BA1A 2K35A 3FZMA 2VY6A 3GDQA 1HPMA 1POIA 3IUCA 3KHWA 5FPNA 1QQMA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2D56 A; 
#chains in the Genus database with same CATH topology
 1T7A A;  2E2F A;  2KGQ A;  1ZU3 A;  2YIL A;  3L4I A;  5F1X A;  1LQH A;  1XRS B;  3CQX A;  4KYP A;  1T7B A;  3LDP A;  2MBK A;  1N4N A;  2QWQ A;  3M3Z A;  1T1T A;  1MYN A;  4V1D C;  1SN4 A;  2ASC A;  1CHZ A;  2I61 A;  2LKB A;  2LI7 A;  4CQK A;  5FPE A;  2LT8 A;  2LJM A;  1K8B A;  1QQM A;  3ATV A;  1C55 A;  3BK3 C;  2KBJ A;  3C7N B;  1QQO A;  3FZF A;  1MR4 A;  3CW4 A;  5BPN A;  2G2K A;  5BN8 A;  2A7T A;  4H5R A;  5AQP A;  1DKG D;  1KAX A;  2YBR C;  4GNI A;  3C7N A;  1ATS A;  2KPY A;  3FZH A;  4HHF A;  5AQJ A;  2KSK A;  4H5W A;  1JXC A;  5FPN A;  1BK8 A;  4KBO A;  1SEG A;  3E7R L;  2QW9 A;  3KOW A;  1BRZ A;  3FZL A;  1B7D A;  2MZ0 A;  4HE7 A;  2GMO A;  5AQZ A;  1NH5 A;  1ZVG A;  2JDQ D;  2LY6 A;  5AQT A;  1I2U A;  2LR3 A;  1CN2 A;  1WT7 A;  2KHO A;  1ZUT A;  3KP0 A;  3LDO A;  4H5N A;  1NGE A;  3D2E B;  5FPM A;  4H5T A;  1P00 A;  3FE1 A;  5AQK A;  2D56 A;  5AQY A;  5AQS A;  2YEO A;  1OMY A;  3D2E A;  1BCG A;  5EVZ A;  2LY5 A;  1UGL A;  2GL1 A;  2YIO A;  1KV0 A;  4AEI A;  1L4V A;  5EXW A;  1T0Z A;  4UAF E;  2B68 A;  2E88 A;  4UAE F;  1QQN A;  1ZFU A;  1KAZ A;  2E8A A;  2YIP A;  3L56 A;  5AR0 A;  4IO8 A;  1I2V A;  3KOY A;  1P0A A;  1PTX A;  1S3X A;  2MN5 A;  1NE5 A;  2NY9 X;  2LJ7 A;  1WMT A;  3KP1 A;  2N69 A;  2QWM A;  3GL1 A;  1B3C A;  1NGD A;  3LDQ A;  5AQN A;  1HX1 A;  2E3G A;  3I33 A;  3KOZ A;  1TI5 A;  2NY8 X;  3KOX A;  4UJ0 A;  3L6Q A;  2QWN A;  3QML A;  2KYQ A;  5EX5 A;  5AQO A;  3PSM A;  1BUP A;  5KK4 A;  5AQM A;  5AQX A;  3FZK A;  1AHO A;  2E3F A;  1BMR A;  3R2V A;  5FPD A;  4HWI A;  2N66 A;  3QFP A;  5AQH A;  2YC1 C;  1NGG A;  3QFU A;  1ZYW A;  2BUP A;  2B3C A;  1LQI A;  2LN8 A;  1NRB A;  3D2F B;  5BPM A;  1JKZ A;  1NGH A;  3SF4 D;  2QWP A;  3E7U X;  2N2R A;  3LDL A;  3D2F A;  3HSC A;  5AQV A;  1BA0 A;  1FH3 A;  4AAZ A;  1NGJ A;  1HJO A;  1NRA A;  2ATB A;  5AQU A;  1LQQ A;  1DQ7 A;  5F0X A;  2QWL A;  3QI7 A;  5AQQ A;  1YUW A;  1VNB A;  1NGF A;  3AY9 A;  1JZA A;  1JZB A;  2E0H A;  1I6G A;  2QXL A;  1C56 A;  2KBK A;  1SNB A;  1I6F A;  5CY0 A;  1ZYV A;  3ATU A;  5BPL A;  4FL9 A;  5AQF A;  1KAY A;  3LDN A;  1T7E A;  1ICA A;  2SN3 A;  3A8Y A;  2QWR A;  5AQI A;  1DJT A;  1GPT A;  4FSV A;  1NGI A;  5EY4 A;  1NGA A;  5AQW A;  1SN1 A;  2V7Z A;  2QWO A;  5AQG A;  5F2R A;  1PX9 A;  3KVG A;  5AQL A;  1AYJ A;  4H5V A;  1ATR A;  3GKU A;  2KBH A;  3JXU A;  3KC6 A;  1NGB A;  1WWN A;  1ZVE A;  2BRZ A;  5AQR A;  1NPI A;  4AB0 A;  1NGC A;  5BN9 A;  2N2Q A;  4UAD E;  1BA1 A;  2K35 A;  3FZM A;  1GPS A;  2VY6 A;  1PE4 A;  3GDQ A;  1HPM A;  1POI A;  2KJA A;  3IUC A;  3KHW A;  1OZZ A;  2M8B B;  1VNA A; 
#chains in the Genus database with same CATH homology
 2E2F A;  2YIL A;  3L4I A;  5F1X A;  3CQX A;  3LDP A;  2MBK A;  2QWQ A;  3M3Z A;  5FPE A;  3ATV A;  3BK3 C;  3C7N B;  3FZF A;  1QQO A;  3CW4 A;  5BPN A;  5BN8 A;  5AQP A;  4H5R A;  1DKG D;  1KAX A;  4GNI A;  3C7N A;  1ATS A;  3FZH A;  5AQJ A;  4H5W A;  4KBO A;  2QW9 A;  3FZL A;  2GMO A;  5AQZ A;  2JDQ D;  5AQT A;  2KHO A;  3LDO A;  4H5N A;  1NGE A;  3D2E B;  5FPM A;  4H5T A;  3FE1 A;  5AQK A;  2D56 A;  5AQY A;  5AQS A;  3D2E A;  5EVZ A;  2YIO A;  5EXW A;  4UAF E;  2E88 A;  4UAE F;  1QQN A;  2E8A A;  1KAZ A;  2YIP A;  3L56 A;  5AR0 A;  4IO8 A;  1S3X A;  2MN5 A;  2QWM A;  3GL1 A;  1NGD A;  3LDQ A;  5AQN A;  1HX1 A;  3I33 A;  3L6Q A;  2QWN A;  3QML A;  5EX5 A;  5AQO A;  1BUP A;  5AQM A;  5AQX A;  3FZK A;  3R2V A;  5FPD A;  4HWI A;  3QFP A;  5AQH A;  1NGG A;  3QFU A;  2BUP A;  2LN8 A;  5BPM A;  3D2F B;  1NGH A;  3SF4 D;  2QWP A;  3LDL A;  3D2F A;  3HSC A;  5AQV A;  1BA0 A;  1NGJ A;  1HJO A;  5AQU A;  5F0X A;  2QWL A;  3QI7 A;  5AQQ A;  1YUW A;  3AY9 A;  1NGF A;  2QXL A;  3ATU A;  5BPL A;  4FL9 A;  5AQF A;  1KAY A;  3LDN A;  3A8Y A;  2QWR A;  5AQI A;  4FSV A;  1NGI A;  5EY4 A;  1NGA A;  5AQW A;  2V7Z A;  2QWO A;  5AQG A;  5F2R A;  3KVG A;  5AQL A;  4H5V A;  1ATR A;  3KC6 A;  3JXU A;  1NGB A;  5AQR A;  1NGC A;  5BN9 A;  4UAD E;  1BA1 A;  2K35 A;  3FZM A;  2VY6 A;  3GDQ A;  1HPM A;  1POI A;  3IUC A;  3KHW A;  5FPN A;  1QQM A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2D56A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN