2KBHA

Solution structure of bmkalphatx11 (major conformation)
Total Genus 10

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
66
structure length
66
Chain Sequence
VKDGYIADDRNCPYFCGRNAYCDGECKKNRAESGYCQWASKYGNACWCYKLPDDARIMKPGRCNGG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (2-5)TI2 (52-55)O1 (12-63)S2 (33-37)TIV1 (42-45)TI1 (8-11)EMPTYS3 (45-51)AH1 (19-29)Updating...
connected with : NaN
molecule tags Toxin
publication title Solution structure of BmKalphaTx11, a toxin from the venom of the Chinese scorpion Buthus martensii Karsch
pubmed doi rcsb
molecule keywords Toxin Bmka2
total genus 10
structure length 66
sequence length 66
ec nomenclature
pdb deposition date 2008-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00537 Toxin_3 Scorpion toxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 2kbhA00
1DQ7A 4KYPA 3E7UX 4HHFA 1TI5A 1WMTA 1LQQA 1VNBA 1P0AA 2KBJA 5CY0A 1DJTA 1OMYA 2LR3A 1KV0A 1L4VA 1B7DA 1T0ZA 2LI7A 2MZ0A 1ZFUA 2LY5A 1B3CA 2KPYA 1NH5A 1ZVEA 1PX9A 2KSKA 1ICAA 1T7EA 2N66A 1WWNA 2KGQA 1JXCA 1ZYWA 2NY8X 1WT7A 1T7BA 1C55A 1MYNA 2N69A 2A7TA 1CHZA 2E3GA 1ZVGA 2E0HA 2LY6A 1I6FA 1LQHA 1NE5A 2E3FA 2YEOA 2SN3A 1T7AA 2ATBA 1N4NA 1I6GA 1LQIA 2N2RA 1CN2A 2LJ7A 1OZZA 5KK4A 4HE7A 3PSMA 2KJAA 2YC1C 1SEGA 3E7RL 1JZAA 2YBRC 1VNAA 1ZUTA 2N2QA 1C56A 2M8BB 1BRZA 1GPTA 1AYJA 2B3CA 2ASCA 1AHOA 2GL1A 1SN1A 4AB0A 4AEIA 4UJ0A 2B68A 1BK8A 2I61A 1T1TA 1GPSA 2KBHA 1NPIA 1SN4A 1SNBA 1ZYVA 4AAZA 1PTXA 1P00A 2BRZA 1ZU3A 1BMRA 2KBKA 1NRAA 2NY9X 2LJMA 1JKZA 2LKBA 4V1DC 1JZBA 1MR4A 1I2VA 1BCGA 1PE4A 1FH3A 1I2UA 1NRBA 2KYQA 4CQKA 2LT8A
chains in the Genus database with same CATH superfamily
1DQ7A 5AQQA 1NGDA 3LDNA 3KVGA 4KYPA 3E7UX 5BN8A 1NGHA 3ATUA 4H5RA 1TI5A 1WMTA 3KOWA 4HHFA 1LQQA 1VNBA 1P0AA 2KBJA 5CY0A 1DJTA 1OMYA 2LR3A 1KV0A 1L4VA 1B7DA 1T0ZA 5AQLA 3LDOA 2LI7A 2MZ0A 1NGEA 1ZFUA 4FSVA 5AQUA 3CW4A 1NGJA 3AY9A 2LY5A 5EXWA 5BPMA 5FPNA 2YILA 1B3CA 2KPYA 5FPMA 1HX1A 1NH5A 2V7ZA 5F0XA 1ZVEA 3HSCA 5AQOA 1QQOA 5AQXA 1BA0A 5FPEA 3GDQA 5AQHA 4IO8A 1PX9A 2KSKA 2VY6A 1T7EA 3LDQA 1ICAA 3KOYA 5AQGA 3SF4D 5BPNA 2N66A 1WWNA 2KGQA 5AR0A 3QFPA 1JXCA 3C7NA 1ZYWA 2NY8X 1WT7A 3L4IA 1T7BA 3KOXA 4H5TA 2QWLA 1C55A 2BUPA 1MYNA 2N69A 2A7TA 1CHZA 2E3GA 1ZVGA 5EVZA 2E0HA 4H5NA 5AQIA 3KHWA 3M3ZA 2LY6A 2JDQD 1I6FA 1LQHA 1NE5A 2D56A 1DKGD 2E3FA 2E8AA 2YEOA 3FE1A 1QQNA 5AQVA 2SN3A 3QMLA 5AQYA 2MBKA 1T7AA 2ATBA 2QWOA 1N4NA 3KC6A 1BA1A 3A8YA 1I6GA 3ATVA 1K8BA 1LQIA 2QWMA 3FZLA 3KP1A 3QI7A 5AQFA 5AQPA 1S3XA 4UAEF 2N2RA 1HPMA 2YIPA 1CN2A 2LJ7A 3CQXA 1NGCA 3D2EB 3LDLA 1OZZA 5AQZA 5F1XA 3FZFA 4KBOA 5AQRA 2QWNA 5KK4A 4HE7A 5AQKA 1NGIA 2QWPA 5EX5A 5AQTA 1KAZA 5AQJA 3PSMA 1QQMA 2KJAA 2QWQA 3LDPA 2YC1C 1SEGA 3E7RL 5AQSA 2LN8A 3GL1A 1JZAA 3FZHA 1BUPA 1VNAA 2YBRC 3GKUA 2MN5A 3FZKA 3I33A 2G2KA 2K35A 2E2FA 1NGGA 3D2FA 5BN9A 1ZUTA 2N2QA 1C56A 2M8BB 1BRZA 3JXUA 4GNIA 1GPTA 3BK3C 3L56A 3IUCA 1AYJA 5FPDA 2B3CA 1HJOA 2ASCA 1AHOA 5BPLA 3KOZA 2GL1A 2YIOA 3FZMA 2GMOA 1UGLA 4UAFE 5F2RA 1SN1A 4AB0A 4AEIA 4UJ0A 1YUWA 1JKZA 2B68A 3KP0A 1BK8A 2I61A 2E88A 1T1TA 1KAXA 4H5VA 1GPSA 2KBHA 1NPIA 1SN4A 1SNBA 1ZYVA 4AAZA 1NGBA 1PTXA 3QFUA 1P00A 2BRZA 2QXLA 1NGFA 1ZU3A 1ATSA 3C7NB 2KBKA 1BMRA 1NRAA 2NY9X 2LJMA 5EY4A 5AQWA 2LKBA 2QW9A 4FL9A 3L6QA 4V1DC 4HWIA 5AQMA 1JZBA 1NGAA 1MR4A 1I2VA 1XRSB 5AQNA 1BCGA 1PE4A 4H5WA 3R2VA 1FH3A 1I2UA 2QWRA 3D2FB 1NRBA 3D2EA 4UADE 2KYQA 1ATRA 1POIA 1KAYA 2KHOA 4CQKA 2LT8A
chains in the Genus database with same CATH topology
1DQ7A 4KYPA 3E7UX 4HHFA 1TI5A 1WMTA 1LQQA 1VNBA 1P0AA 2KBJA 5CY0A 1DJTA 1OMYA 2LR3A 1KV0A 1L4VA 1B7DA 1T0ZA 2LI7A 2MZ0A 1ZFUA 2LY5A 1B3CA 2KPYA 1NH5A 1ZVEA 1PX9A 2KSKA 1ICAA 1T7EA 2N66A 1WWNA 2KGQA 1JXCA 1ZYWA 2NY8X 1WT7A 1T7BA 1C55A 1MYNA 2N69A 2A7TA 1CHZA 2E3GA 1ZVGA 2E0HA 2LY6A 1I6FA 1LQHA 1NE5A 2E3FA 2YEOA 2SN3A 1T7AA 2ATBA 1N4NA 1I6GA 1LQIA 2N2RA 1CN2A 2LJ7A 1OZZA 5KK4A 4HE7A 3PSMA 2KJAA 2YC1C 1SEGA 3E7RL 1JZAA 2YBRC 1VNAA 1ZUTA 2N2QA 1C56A 2M8BB 1BRZA 1GPTA 1AYJA 2B3CA 2ASCA 1AHOA 2GL1A 1SN1A 4AB0A 4AEIA 4UJ0A 2B68A 1BK8A 2I61A 1T1TA 1GPSA 2KBHA 1NPIA 1SN4A 1SNBA 1ZYVA 4AAZA 1PTXA 1P00A 2BRZA 1ZU3A 1BMRA 2KBKA 1NRAA 2NY9X 2LJMA 1JKZA 2LKBA 4V1DC 1JZBA 1MR4A 1I2VA 1BCGA 1PE4A 1FH3A 1I2UA 1NRBA 2KYQA 4CQKA 2LT8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DQ7 A;  4KYP A;  3E7U X;  4HHF A;  1TI5 A;  1WMT A;  1LQQ A;  1VNB A;  1P0A A;  2KBJ A;  5CY0 A;  1DJT A;  1OMY A;  2LR3 A;  1KV0 A;  1L4V A;  1B7D A;  1T0Z A;  2LI7 A;  2MZ0 A;  1ZFU A;  2LY5 A;  1B3C A;  2KPY A;  1NH5 A;  1ZVE A;  1PX9 A;  2KSK A;  1ICA A;  1T7E A;  2N66 A;  1WWN A;  2KGQ A;  1JXC A;  1ZYW A;  2NY8 X;  1WT7 A;  1T7B A;  1C55 A;  1MYN A;  2N69 A;  2A7T A;  1CHZ A;  2E3G A;  1ZVG A;  2E0H A;  2LY6 A;  1I6F A;  1LQH A;  1NE5 A;  2E3F A;  2YEO A;  2SN3 A;  1T7A A;  2ATB A;  1N4N A;  1I6G A;  1LQI A;  2N2R A;  1CN2 A;  2LJ7 A;  1OZZ A;  5KK4 A;  4HE7 A;  3PSM A;  2KJA A;  2YC1 C;  1SEG A;  3E7R L;  1JZA A;  2YBR C;  1VNA A;  1ZUT A;  2N2Q A;  1C56 A;  2M8B B;  1BRZ A;  1GPT A;  1AYJ A;  2B3C A;  2ASC A;  1AHO A;  2GL1 A;  1SN1 A;  4AB0 A;  4AEI A;  4UJ0 A;  2B68 A;  1BK8 A;  2I61 A;  1T1T A;  1GPS A;  2KBH A;  1NPI A;  1SN4 A;  1SNB A;  1ZYV A;  4AAZ A;  1PTX A;  1P00 A;  2BRZ A;  1ZU3 A;  1BMR A;  2KBK A;  1NRA A;  2NY9 X;  2LJM A;  1JKZ A;  2LKB A;  4V1D C;  1JZB A;  1MR4 A;  1I2V A;  1BCG A;  1PE4 A;  1FH3 A;  1I2U A;  1NRB A;  2KYQ A;  4CQK A;  2LT8 A; 
#chains in the Genus database with same CATH topology
 1DQ7 A;  5AQQ A;  1NGD A;  3LDN A;  3KVG A;  4KYP A;  3E7U X;  5BN8 A;  1NGH A;  3ATU A;  4H5R A;  1TI5 A;  1WMT A;  3KOW A;  4HHF A;  1LQQ A;  1VNB A;  1P0A A;  2KBJ A;  5CY0 A;  1DJT A;  1OMY A;  2LR3 A;  1KV0 A;  1L4V A;  1B7D A;  1T0Z A;  5AQL A;  3LDO A;  2LI7 A;  2MZ0 A;  1NGE A;  1ZFU A;  4FSV A;  5AQU A;  3CW4 A;  1NGJ A;  3AY9 A;  2LY5 A;  5EXW A;  5BPM A;  5FPN A;  2YIL A;  1B3C A;  2KPY A;  5FPM A;  1HX1 A;  1NH5 A;  2V7Z A;  5F0X A;  1ZVE A;  3HSC A;  5AQO A;  1QQO A;  5AQX A;  1BA0 A;  5FPE A;  3GDQ A;  5AQH A;  4IO8 A;  1PX9 A;  2KSK A;  2VY6 A;  1T7E A;  3LDQ A;  1ICA A;  3KOY A;  5AQG A;  3SF4 D;  5BPN A;  2N66 A;  1WWN A;  2KGQ A;  5AR0 A;  3QFP A;  1JXC A;  3C7N A;  1ZYW A;  2NY8 X;  1WT7 A;  3L4I A;  1T7B A;  3KOX A;  4H5T A;  2QWL A;  1C55 A;  2BUP A;  1MYN A;  2N69 A;  2A7T A;  1CHZ A;  2E3G A;  1ZVG A;  5EVZ A;  2E0H A;  4H5N A;  5AQI A;  3KHW A;  3M3Z A;  2LY6 A;  2JDQ D;  1I6F A;  1LQH A;  1NE5 A;  2D56 A;  1DKG D;  2E3F A;  2E8A A;  2YEO A;  3FE1 A;  1QQN A;  5AQV A;  2SN3 A;  3QML A;  5AQY A;  2MBK A;  1T7A A;  2ATB A;  2QWO A;  1N4N A;  3KC6 A;  1BA1 A;  3A8Y A;  1I6G A;  3ATV A;  1K8B A;  1LQI A;  2QWM A;  3FZL A;  3KP1 A;  3QI7 A;  5AQF A;  5AQP A;  1S3X A;  4UAE F;  2N2R A;  1HPM A;  2YIP A;  1CN2 A;  2LJ7 A;  3CQX A;  1NGC A;  3D2E B;  3LDL A;  1OZZ A;  5AQZ A;  5F1X A;  3FZF A;  4KBO A;  5AQR A;  2QWN A;  5KK4 A;  4HE7 A;  5AQK A;  1NGI A;  2QWP A;  5EX5 A;  5AQT A;  1KAZ A;  5AQJ A;  3PSM A;  1QQM A;  2KJA A;  2QWQ A;  3LDP A;  2YC1 C;  1SEG A;  3E7R L;  5AQS A;  2LN8 A;  3GL1 A;  1JZA A;  3FZH A;  1BUP A;  1VNA A;  2YBR C;  3GKU A;  2MN5 A;  3FZK A;  3I33 A;  2G2K A;  2K35 A;  2E2F A;  1NGG A;  3D2F A;  5BN9 A;  1ZUT A;  2N2Q A;  1C56 A;  2M8B B;  1BRZ A;  3JXU A;  4GNI A;  1GPT A;  3BK3 C;  3L56 A;  3IUC A;  1AYJ A;  5FPD A;  2B3C A;  1HJO A;  2ASC A;  1AHO A;  5BPL A;  3KOZ A;  2GL1 A;  2YIO A;  3FZM A;  2GMO A;  1UGL A;  4UAF E;  5F2R A;  1SN1 A;  4AB0 A;  4AEI A;  4UJ0 A;  1YUW A;  1JKZ A;  2B68 A;  3KP0 A;  1BK8 A;  2I61 A;  2E88 A;  1T1T A;  1KAX A;  4H5V A;  1GPS A;  2KBH A;  1NPI A;  1SN4 A;  1SNB A;  1ZYV A;  4AAZ A;  1NGB A;  1PTX A;  3QFU A;  1P00 A;  2BRZ A;  2QXL A;  1NGF A;  1ZU3 A;  1ATS A;  3C7N B;  2KBK A;  1BMR A;  1NRA A;  2NY9 X;  2LJM A;  5EY4 A;  5AQW A;  2LKB A;  2QW9 A;  4FL9 A;  3L6Q A;  4V1D C;  4HWI A;  5AQM A;  1JZB A;  1NGA A;  1MR4 A;  1I2V A;  1XRS B;  5AQN A;  1BCG A;  1PE4 A;  4H5W A;  3R2V A;  1FH3 A;  1I2U A;  2QWR A;  3D2F B;  1NRB A;  3D2E A;  4UAD E;  2KYQ A;  1ATR A;  1POI A;  1KAY A;  2KHO A;  4CQK A;  2LT8 A; 
#chains in the Genus database with same CATH homology
 1DQ7 A;  4KYP A;  3E7U X;  4HHF A;  1TI5 A;  1WMT A;  1LQQ A;  1VNB A;  1P0A A;  2KBJ A;  5CY0 A;  1DJT A;  1OMY A;  2LR3 A;  1KV0 A;  1L4V A;  1B7D A;  1T0Z A;  2LI7 A;  2MZ0 A;  1ZFU A;  2LY5 A;  1B3C A;  2KPY A;  1NH5 A;  1ZVE A;  1PX9 A;  2KSK A;  1ICA A;  1T7E A;  2N66 A;  1WWN A;  2KGQ A;  1JXC A;  1ZYW A;  2NY8 X;  1WT7 A;  1T7B A;  1C55 A;  1MYN A;  2N69 A;  2A7T A;  1CHZ A;  2E3G A;  1ZVG A;  2E0H A;  2LY6 A;  1I6F A;  1LQH A;  1NE5 A;  2E3F A;  2YEO A;  2SN3 A;  1T7A A;  2ATB A;  1N4N A;  1I6G A;  1LQI A;  2N2R A;  1CN2 A;  2LJ7 A;  1OZZ A;  5KK4 A;  4HE7 A;  3PSM A;  2KJA A;  2YC1 C;  1SEG A;  3E7R L;  1JZA A;  2YBR C;  1VNA A;  1ZUT A;  2N2Q A;  1C56 A;  2M8B B;  1BRZ A;  1GPT A;  1AYJ A;  2B3C A;  2ASC A;  1AHO A;  2GL1 A;  1SN1 A;  4AB0 A;  4AEI A;  4UJ0 A;  2B68 A;  1BK8 A;  2I61 A;  1T1T A;  1GPS A;  2KBH A;  1NPI A;  1SN4 A;  1SNB A;  1ZYV A;  4AAZ A;  1PTX A;  1P00 A;  2BRZ A;  1ZU3 A;  1BMR A;  2KBK A;  1NRA A;  2NY9 X;  2LJM A;  1JKZ A;  2LKB A;  4V1D C;  1JZB A;  1MR4 A;  1I2V A;  1BCG A;  1PE4 A;  1FH3 A;  1I2U A;  1NRB A;  2KYQ A;  4CQK A;  2LT8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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