2KBKA

Solution structure of bmk-m10
Total Genus 10

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
64
structure length
64
Chain Sequence
VRDAYIAKPENCVYECGITQDCNKLCTENGAESGYCQWGGKYGNACWCIKLPDSVPIRVPGKCQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (2-4)TI2 (52-55)TIV1 (8-11)EMPTYS2 (33-40)TIV4 (17-20)AH1 (22-29)S3 (43-51)O1 (12-63)TIV2 (9-12)Updating...
connected with : NaN
molecule tags Toxin
publication title Solution Structure of BmK-M10
rcsb
molecule keywords Neurotoxin BmK-M10
total genus 10
structure length 64
sequence length 64
ec nomenclature
pdb deposition date 2008-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00537 Toxin_3 Scorpion toxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 2kbkA00
1ICAA 1NRBA 1WMTA 2KBKA 1SN4A 2KBHA 2KSKA 1I2UA 1VNAA 1LQIA 2LY6A 1B3CA 2MZ0A 1LQQA 1CN2A 2I61A 3E7RL 2E0HA 2KPYA 4CQKA 2LT8A 1JZAA 1T7BA 2KYQA 1ZUTA 1GPSA 1FH3A 1CHZA 2ASCA 3PSMA 4UJ0A 1LQHA 2N2RA 1BMRA 1BK8A 1DJTA 1WT7A 1SNBA 2SN3A 5KK4A 1B7DA 1MYNA 1T7EA 2B3CA 4AAZA 2NY8X 1SEGA 1P0AA 4AEIA 1ZVGA 2YEOA 1NRAA 1NH5A 2ATBA 2KBJA 2E3GA 1N4NA 2YC1C 1PTXA 1TI5A 2YBRC 1AYJA 2NY9X 1SN1A 2N2QA 2BRZA 3E7UX 1AHOA 2LY5A 2LJ7A 1P00A 1T1TA 1MR4A 4V1DC 1ZU3A 4HE7A 1I2VA 1BCGA 1NE5A 1OZZA 2KGQA 1ZVEA 2N66A 5CY0A 4AB0A 1VNBA 1PX9A 1KV0A 1ZFUA 1PE4A 1NPIA 1OMYA 2M8BB 2N69A 1I6FA 2LI7A 1T7AA 1I6GA 2LJMA 1DQ7A 1WWNA 2A7TA 1ZYVA 1JZBA 2LKBA 4KYPA 2GL1A 1C56A 1ZYWA 1T0ZA 1GPTA 4HHFA 1JXCA 2KJAA 1BRZA 2B68A 2E3FA 2LR3A 1JKZA 1L4VA 1C55A
chains in the Genus database with same CATH superfamily
1KAXA 3KOWA 1ICAA 1NRBA 5EXWA 1WMTA 2KBKA 2YIOA 1SN4A 2KBHA 2KSKA 1I2UA 1VNAA 1LQIA 2LY6A 1NGEA 3L56A 5EX5A 2MZ0A 1LQQA 1B3CA 3D2EB 1QQMA 1S3XA 1CN2A 2E8AA 2QWMA 3GDQA 2I61A 2JDQD 5EVZA 5AQLA 1HX1A 3E7RL 2E0HA 2KPYA 3R2VA 5AQIA 4CQKA 4KBOA 5AQSA 5AQRA 5F0XA 2MN5A 2LT8A 1JZAA 3L6QA 1T7BA 3CQXA 5FPMA 2GMOA 2KYQA 1ZUTA 5AQJA 3ATUA 1FH3A 1GPSA 1CHZA 2QWQA 4IO8A 3QI7A 5AQWA 3KOZA 3KP0A 2ASCA 4GNIA 5EY4A 3PSMA 4UJ0A 2K35A 5AQKA 2YILA 3D2FA 1LQHA 2N2RA 5AQUA 1BMRA 1BK8A 1DJTA 1WT7A 1QQOA 3CW4A 5AQQA 1NGDA 5AQVA 1SNBA 3HSCA 3FZMA 2QWPA 2SN3A 5KK4A 1B7DA 1BA1A 5BN8A 1MYNA 2D56A 2QWLA 3AY9A 1K8BA 1T7EA 2B3CA 3ATVA 3C7NB 2NY8X 3FE1A 3IUCA 3KOYA 4AAZA 3LDOA 1SEGA 1P0AA 4AEIA 3JXUA 1HPMA 1ZVGA 1NGBA 2YEOA 1NRAA 1NGAA 3D2EA 1NH5A 2ATBA 3FZFA 2KBJA 3QFPA 2E3GA 1N4NA 2YC1C 1PTXA 1TI5A 1BA0A 2YBRC 5BPLA 1AYJA 3KVGA 2NY9X 5AQXA 1SN1A 1UGLA 4FL9A 2N2QA 2BRZA 1ATSA 1AHOA 3E7UX 3M3ZA 4UAEF 5AQFA 5FPNA 2LY5A 2LJ7A 3LDPA 1NGIA 1XRSB 1P00A 1T1TA 1MR4A 5AQYA 4V1DC 1ZU3A 1POIA 4HE7A 1NGGA 1I2VA 1BCGA 3FZHA 1NE5A 1OZZA 2KGQA 5AQPA 4H5VA 1HJOA 1NGCA 5F2RA 1ZVEA 2N66A 3BK3C 4AB0A 2YIPA 5CY0A 1QQNA 2VY6A 1VNBA 5F1XA 5FPEA 3QFUA 1PX9A 3KC6A 2QWRA 1KV0A 1KAYA 3A8YA 1ZFUA 1PE4A 2QWOA 2QW9A 1NPIA 1OMYA 2M8BB 2N69A 3C7NA 3GL1A 1I6FA 3LDQA 4H5NA 3L4IA 2QXLA 1NGJA 1BUPA 2LI7A 1T7AA 3KOXA 4UAFE 1I6GA 2LJMA 1DQ7A 2MBKA 5AQTA 3QMLA 1WWNA 2A7TA 1ZYVA 1JZBA 2LKBA 3I33A 1NGFA 4KYPA 2KHOA 3LDNA 2GL1A 3FZLA 5AQZA 1C56A 2E88A 4FSVA 4HWIA 1ZYWA 3GKUA 5BN9A 2LN8A 5AQHA 3SF4D 1T0ZA 3FZKA 1ATRA 1KAZA 2G2KA 3KP1A 1GPTA 4HHFA 5BPMA 1DKGD 3D2FB 4H5TA 3LDLA 5FPDA 1JXCA 2E2FA 2KJAA 4UADE 1BRZA 5AQOA 4H5WA 1YUWA 2B68A 5AQMA 5BPNA 4H5RA 2BUPA 5AQNA 3KHWA 5AQGA 2E3FA 2LR3A 1JKZA 2V7ZA 1L4VA 1NGHA 2QWNA 5AR0A 1C55A
chains in the Genus database with same CATH topology
1ICAA 1NRBA 1WMTA 2KBKA 1SN4A 2KBHA 2KSKA 1I2UA 1VNAA 1LQIA 2LY6A 1B3CA 2MZ0A 1LQQA 1CN2A 2I61A 3E7RL 2E0HA 2KPYA 4CQKA 2LT8A 1JZAA 1T7BA 2KYQA 1ZUTA 1GPSA 1FH3A 1CHZA 2ASCA 3PSMA 4UJ0A 1LQHA 2N2RA 1BMRA 1BK8A 1DJTA 1WT7A 1SNBA 2SN3A 5KK4A 1B7DA 1MYNA 1T7EA 2B3CA 4AAZA 2NY8X 1SEGA 1P0AA 4AEIA 1ZVGA 2YEOA 1NRAA 1NH5A 2ATBA 2KBJA 2E3GA 1N4NA 2YC1C 1PTXA 1TI5A 2YBRC 1AYJA 2NY9X 1SN1A 2N2QA 2BRZA 3E7UX 1AHOA 2LY5A 2LJ7A 1P00A 1T1TA 1MR4A 4V1DC 1ZU3A 4HE7A 1I2VA 1BCGA 1NE5A 1OZZA 2KGQA 1ZVEA 2N66A 5CY0A 4AB0A 1VNBA 1PX9A 1KV0A 1ZFUA 1PE4A 1NPIA 1OMYA 2M8BB 2N69A 1I6FA 2LI7A 1T7AA 1I6GA 2LJMA 1DQ7A 1WWNA 2A7TA 1ZYVA 1JZBA 2LKBA 4KYPA 2GL1A 1C56A 1ZYWA 1T0ZA 1GPTA 4HHFA 1JXCA 2KJAA 1BRZA 2B68A 2E3FA 2LR3A 1JKZA 1L4VA 1C55A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ICA A;  1NRB A;  1WMT A;  2KBK A;  1SN4 A;  2KBH A;  2KSK A;  1I2U A;  1VNA A;  1LQI A;  2LY6 A;  1B3C A;  2MZ0 A;  1LQQ A;  1CN2 A;  2I61 A;  3E7R L;  2E0H A;  2KPY A;  4CQK A;  2LT8 A;  1JZA A;  1T7B A;  2KYQ A;  1ZUT A;  1GPS A;  1FH3 A;  1CHZ A;  2ASC A;  3PSM A;  4UJ0 A;  1LQH A;  2N2R A;  1BMR A;  1BK8 A;  1DJT A;  1WT7 A;  1SNB A;  2SN3 A;  5KK4 A;  1B7D A;  1MYN A;  1T7E A;  2B3C A;  4AAZ A;  2NY8 X;  1SEG A;  1P0A A;  4AEI A;  1ZVG A;  2YEO A;  1NRA A;  1NH5 A;  2ATB A;  2KBJ A;  2E3G A;  1N4N A;  2YC1 C;  1PTX A;  1TI5 A;  2YBR C;  1AYJ A;  2NY9 X;  1SN1 A;  2N2Q A;  2BRZ A;  3E7U X;  1AHO A;  2LY5 A;  2LJ7 A;  1P00 A;  1T1T A;  1MR4 A;  4V1D C;  1ZU3 A;  4HE7 A;  1I2V A;  1BCG A;  1NE5 A;  1OZZ A;  2KGQ A;  1ZVE A;  2N66 A;  5CY0 A;  4AB0 A;  1VNB A;  1PX9 A;  1KV0 A;  1ZFU A;  1PE4 A;  1NPI A;  1OMY A;  2M8B B;  2N69 A;  1I6F A;  2LI7 A;  1T7A A;  1I6G A;  2LJM A;  1DQ7 A;  1WWN A;  2A7T A;  1ZYV A;  1JZB A;  2LKB A;  4KYP A;  2GL1 A;  1C56 A;  1ZYW A;  1T0Z A;  1GPT A;  4HHF A;  1JXC A;  2KJA A;  1BRZ A;  2B68 A;  2E3F A;  2LR3 A;  1JKZ A;  1L4V A;  1C55 A; 
#chains in the Genus database with same CATH topology
 1KAX A;  3KOW A;  1ICA A;  1NRB A;  5EXW A;  1WMT A;  2KBK A;  2YIO A;  1SN4 A;  2KBH A;  2KSK A;  1I2U A;  1VNA A;  1LQI A;  2LY6 A;  1NGE A;  3L56 A;  5EX5 A;  2MZ0 A;  1LQQ A;  1B3C A;  3D2E B;  1QQM A;  1S3X A;  1CN2 A;  2E8A A;  2QWM A;  3GDQ A;  2I61 A;  2JDQ D;  5EVZ A;  5AQL A;  1HX1 A;  3E7R L;  2E0H A;  2KPY A;  3R2V A;  5AQI A;  4CQK A;  4KBO A;  5AQS A;  5AQR A;  5F0X A;  2MN5 A;  2LT8 A;  1JZA A;  3L6Q A;  1T7B A;  3CQX A;  5FPM A;  2GMO A;  2KYQ A;  1ZUT A;  5AQJ A;  3ATU A;  1FH3 A;  1GPS A;  1CHZ A;  2QWQ A;  4IO8 A;  3QI7 A;  5AQW A;  3KOZ A;  3KP0 A;  2ASC A;  4GNI A;  5EY4 A;  3PSM A;  4UJ0 A;  2K35 A;  5AQK A;  2YIL A;  3D2F A;  1LQH A;  2N2R A;  5AQU A;  1BMR A;  1BK8 A;  1DJT A;  1WT7 A;  1QQO A;  3CW4 A;  5AQQ A;  1NGD A;  5AQV A;  1SNB A;  3HSC A;  3FZM A;  2QWP A;  2SN3 A;  5KK4 A;  1B7D A;  1BA1 A;  5BN8 A;  1MYN A;  2D56 A;  2QWL A;  3AY9 A;  1K8B A;  1T7E A;  2B3C A;  3ATV A;  3C7N B;  2NY8 X;  3FE1 A;  3IUC A;  3KOY A;  4AAZ A;  3LDO A;  1SEG A;  1P0A A;  4AEI A;  3JXU A;  1HPM A;  1ZVG A;  1NGB A;  2YEO A;  1NRA A;  1NGA A;  3D2E A;  1NH5 A;  2ATB A;  3FZF A;  2KBJ A;  3QFP A;  2E3G A;  1N4N A;  2YC1 C;  1PTX A;  1TI5 A;  1BA0 A;  2YBR C;  5BPL A;  1AYJ A;  3KVG A;  2NY9 X;  5AQX A;  1SN1 A;  1UGL A;  4FL9 A;  2N2Q A;  2BRZ A;  1ATS A;  1AHO A;  3E7U X;  3M3Z A;  4UAE F;  5AQF A;  5FPN A;  2LY5 A;  2LJ7 A;  3LDP A;  1NGI A;  1XRS B;  1P00 A;  1T1T A;  1MR4 A;  5AQY A;  4V1D C;  1ZU3 A;  1POI A;  4HE7 A;  1NGG A;  1I2V A;  1BCG A;  3FZH A;  1NE5 A;  1OZZ A;  2KGQ A;  5AQP A;  4H5V A;  1HJO A;  1NGC A;  5F2R A;  1ZVE A;  2N66 A;  3BK3 C;  4AB0 A;  2YIP A;  5CY0 A;  1QQN A;  2VY6 A;  1VNB A;  5F1X A;  5FPE A;  3QFU A;  1PX9 A;  3KC6 A;  2QWR A;  1KV0 A;  1KAY A;  3A8Y A;  1ZFU A;  1PE4 A;  2QWO A;  2QW9 A;  1NPI A;  1OMY A;  2M8B B;  2N69 A;  3C7N A;  3GL1 A;  1I6F A;  3LDQ A;  4H5N A;  3L4I A;  2QXL A;  1NGJ A;  1BUP A;  2LI7 A;  1T7A A;  3KOX A;  4UAF E;  1I6G A;  2LJM A;  1DQ7 A;  2MBK A;  5AQT A;  3QML A;  1WWN A;  2A7T A;  1ZYV A;  1JZB A;  2LKB A;  3I33 A;  1NGF A;  4KYP A;  2KHO A;  3LDN A;  2GL1 A;  3FZL A;  5AQZ A;  1C56 A;  2E88 A;  4FSV A;  4HWI A;  1ZYW A;  3GKU A;  5BN9 A;  2LN8 A;  5AQH A;  3SF4 D;  1T0Z A;  3FZK A;  1ATR A;  1KAZ A;  2G2K A;  3KP1 A;  1GPT A;  4HHF A;  5BPM A;  1DKG D;  3D2F B;  4H5T A;  3LDL A;  5FPD A;  1JXC A;  2E2F A;  2KJA A;  4UAD E;  1BRZ A;  5AQO A;  4H5W A;  1YUW A;  2B68 A;  5AQM A;  5BPN A;  4H5R A;  2BUP A;  5AQN A;  3KHW A;  5AQG A;  2E3F A;  2LR3 A;  1JKZ A;  2V7Z A;  1L4V A;  1NGH A;  2QWN A;  5AR0 A;  1C55 A; 
#chains in the Genus database with same CATH homology
 1ICA A;  1NRB A;  1WMT A;  2KBK A;  1SN4 A;  2KBH A;  2KSK A;  1I2U A;  1VNA A;  1LQI A;  2LY6 A;  1B3C A;  2MZ0 A;  1LQQ A;  1CN2 A;  2I61 A;  3E7R L;  2E0H A;  2KPY A;  4CQK A;  2LT8 A;  1JZA A;  1T7B A;  2KYQ A;  1ZUT A;  1GPS A;  1FH3 A;  1CHZ A;  2ASC A;  3PSM A;  4UJ0 A;  1LQH A;  2N2R A;  1BMR A;  1BK8 A;  1DJT A;  1WT7 A;  1SNB A;  2SN3 A;  5KK4 A;  1B7D A;  1MYN A;  1T7E A;  2B3C A;  4AAZ A;  2NY8 X;  1SEG A;  1P0A A;  4AEI A;  1ZVG A;  2YEO A;  1NRA A;  1NH5 A;  2ATB A;  2KBJ A;  2E3G A;  1N4N A;  2YC1 C;  1PTX A;  1TI5 A;  2YBR C;  1AYJ A;  2NY9 X;  1SN1 A;  2N2Q A;  2BRZ A;  3E7U X;  1AHO A;  2LY5 A;  2LJ7 A;  1P00 A;  1T1T A;  1MR4 A;  4V1D C;  1ZU3 A;  4HE7 A;  1I2V A;  1BCG A;  1NE5 A;  1OZZ A;  2KGQ A;  1ZVE A;  2N66 A;  5CY0 A;  4AB0 A;  1VNB A;  1PX9 A;  1KV0 A;  1ZFU A;  1PE4 A;  1NPI A;  1OMY A;  2M8B B;  2N69 A;  1I6F A;  2LI7 A;  1T7A A;  1I6G A;  2LJM A;  1DQ7 A;  1WWN A;  2A7T A;  1ZYV A;  1JZB A;  2LKB A;  4KYP A;  2GL1 A;  1C56 A;  1ZYW A;  1T0Z A;  1GPT A;  4HHF A;  1JXC A;  2KJA A;  1BRZ A;  2B68 A;  2E3F A;  2LR3 A;  1JKZ A;  1L4V A;  1C55 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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