2KSKA

Solution structure of sugarcane defensin 5
Total Genus 5
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
71
structure length
71
Chain Sequence
HTPTPTPICKSRSHEYKGRCIQDMDCNAACVKESESYTGGFCNGRPPFKQCFCTKPCKRERAAATLRWPGL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Portrayal of Complex Dynamic Properties of Sugarcane Defensin 5 by NMR: Multiple Motions Associated with Membrane Interaction.
pubmed doi rcsb
molecule tags Antimicrobial protein
source organism Saccharum officinarum
molecule keywords Sugarcane defensin 5
total genus 5
structure length 71
sequence length 71
ec nomenclature
pdb deposition date 2010-01-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00304 Gamma-thionin Gamma-thionin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 2kskA00
1ZVGA 1SEGA 2B3CA 1N4NA 1T0ZA 2KGQA 2LI7A 2LR3A 4V1DC 1I2UA 2KBHA 1SN1A 1GPSA 1C56A 2LJ7A 1NRAA 1JXCA 1NPIA 4KYPA 1VNBA 1JKZA 3E7RL 2E0HA 5KK4A 2M8BB 2N66A 1GPTA 1I6FA 1WWNA 2KYQA 1PTXA 2GL1A 2KPYA 3E7UX 2KBJA 1ICAA 4HHFA 1ZFUA 2BRZA 1B3CA 2LY5A 1JZAA 1CN2A 1LQIA 1LQHA 2A7TA 2NY9X 1ZUTA 1B7DA 1OZZA 1T7BA 1T7EA 4AAZA 2ASCA 2LY6A 1CHZA 2YEOA 1JZBA 5CY0A 1ZYWA 1PE4A 1C55A 1L4VA 2NY8X 4HE7A 1MYNA 1I2VA 4CQKA 1ZYVA 1P0AA 1BMRA 1SN4A 1NRBA 1TI5A 2SN3A 1VNAA 1DJTA 2KSKA 1NE5A 2N2QA 1SNBA 1LQQA 1T7AA 1BCGA 1WMTA 1I6GA 2ATBA 1AHOA 1ZU3A 2E3GA 1WT7A 2LT8A 2YBRC 1BK8A 1ZVEA 1T1TA 2B68A 1MR4A 1KV0A 1AYJA 4UJ0A 3PSMA 2YC1C 1FH3A 2LJMA 4AEIA 2I61A 2E3FA 2LKBA 2MZ0A 2N2RA 2N69A 2KBKA 1BRZA 1OMYA 1PX9A 4AB0A 1DQ7A 1NH5A 2KJAA 1P00A
chains in the Genus database with same CATH superfamily
2BUPA 1ZVGA 1SEGA 2B3CA 1N4NA 2QWQA 4GNIA 5AQJA 3LDOA 1DKGD 1T0ZA 5EVZA 5FPMA 3LDNA 2LN8A 2KGQA 4IO8A 2LI7A 4FSVA 5AQVA 1NGDA 2LR3A 3KC6A 1NGFA 4V1DC 3ATVA 1I2UA 5BPLA 3I33A 3L56A 2G2KA 2KBHA 3GKUA 3KOYA 5AQTA 3SF4D 1HX1A 1SN1A 1GPSA 1C56A 2LJ7A 1NRAA 5AQKA 5EXWA 1JXCA 4UADE 5AQUA 2QWMA 3LDPA 1NPIA 4KYPA 1VNBA 3FZMA 1JKZA 3LDLA 3E7RL 2E0HA 3GDQA 2V7ZA 5KK4A 3KHWA 2M8BB 2N66A 1GPTA 1I6FA 1S3XA 1WWNA 5BPMA 2KYQA 3KP1A 1PTXA 2GL1A 1HJOA 2KPYA 1NGCA 3E7UX 5AQRA 5EX5A 2KBJA 1ICAA 4HHFA 1ZFUA 1ATRA 2BRZA 2YIOA 1B3CA 1NGHA 2LY5A 1JZAA 4H5RA 1CN2A 2QWLA 1POIA 5AQZA 1LQIA 1QQMA 1LQHA 2E88A 3BK3C 2YILA 5AQLA 1BA0A 4UAFE 2D56A 3QMLA 5F0XA 1XRSB 5BN9A 1QQOA 2A7TA 3D2FA 1HPMA 3L6QA 2NY9X 1ZUTA 5AQHA 3HSCA 5FPNA 1B7DA 5FPDA 1OZZA 5AQQA 4H5TA 1NGIA 1T7BA 3D2FB 1T7EA 5BPNA 4AAZA 2ASCA 3QFPA 2LY6A 1CHZA 2YEOA 1JZBA 5CY0A 5FPEA 1ZYWA 3FZLA 4UAEF 1PE4A 1KAYA 1C55A 2QWRA 3A8YA 5AQGA 5AR0A 2NY8X 1L4VA 1NGAA 1KAZA 4HE7A 1MYNA 1I2VA 5AQFA 1ZYVA 4CQKA 3JXUA 3R2VA 5AQPA 1P0AA 4KBOA 1BMRA 1SN4A 1NRBA 1TI5A 2SN3A 2MBKA 3CQXA 5AQMA 1VNAA 1DJTA 5AQIA 2KSKA 1NE5A 3KP0A 2N2QA 1SNBA 3KOWA 1LQQA 4FL9A 1NGEA 1ATSA 1T7AA 3FZKA 1BCGA 1WMTA 2K35A 2QWOA 5EY4A 1I6GA 2ATBA 5AQSA 3CW4A 2YIPA 1AHOA 2VY6A 3FZHA 1BA1A 1ZU3A 2QXLA 1NGGA 3KOZA 2E3GA 5AQWA 1WT7A 2LT8A 2KHOA 2YBRC 1BK8A 1ZVEA 1QQNA 1T1TA 1NGJA 2B68A 3QI7A 3GL1A 1MR4A 5F1XA 1KV0A 1AYJA 1BUPA 4HWIA 2GMOA 4UJ0A 3PSMA 2YC1C 1YUWA 1FH3A 2LJMA 4H5NA 1UGLA 4AEIA 2I61A 1KAXA 3KVGA 2E3FA 3D2EA 2QWNA 3C7NA 3FZFA 4H5VA 5AQNA 5AQXA 2MN5A 3ATUA 2QW9A 2E8AA 2LKBA 3FE1A 1K8BA 5BN8A 2JDQD 2MZ0A 2QWPA 2N2RA 2N69A 3IUCA 3D2EB 3C7NB 2KBKA 5AQYA 1BRZA 2E2FA 4H5WA 1OMYA 1PX9A 5F2RA 4AB0A 3AY9A 1DQ7A 1NH5A 1NGBA 5AQOA 3L4IA 2KJAA 3LDQA 3M3ZA 3KOXA 3QFUA 1P00A
chains in the Genus database with same CATH topology
1ZVGA 1SEGA 2B3CA 1N4NA 1T0ZA 2KGQA 2LI7A 2LR3A 4V1DC 1I2UA 2KBHA 1SN1A 1GPSA 1C56A 2LJ7A 1NRAA 1JXCA 1NPIA 4KYPA 1VNBA 1JKZA 3E7RL 2E0HA 5KK4A 2M8BB 2N66A 1GPTA 1I6FA 1WWNA 2KYQA 1PTXA 2GL1A 2KPYA 3E7UX 2KBJA 1ICAA 4HHFA 1ZFUA 2BRZA 1B3CA 2LY5A 1JZAA 1CN2A 1LQIA 1LQHA 2A7TA 2NY9X 1ZUTA 1B7DA 1OZZA 1T7BA 1T7EA 4AAZA 2ASCA 2LY6A 1CHZA 2YEOA 1JZBA 5CY0A 1ZYWA 1PE4A 1C55A 1L4VA 2NY8X 4HE7A 1MYNA 1I2VA 4CQKA 1ZYVA 1P0AA 1BMRA 1SN4A 1NRBA 1TI5A 2SN3A 1VNAA 1DJTA 2KSKA 1NE5A 2N2QA 1SNBA 1LQQA 1T7AA 1BCGA 1WMTA 1I6GA 2ATBA 1AHOA 1ZU3A 2E3GA 1WT7A 2LT8A 2YBRC 1BK8A 1ZVEA 1T1TA 2B68A 1MR4A 1KV0A 1AYJA 4UJ0A 3PSMA 2YC1C 1FH3A 2LJMA 4AEIA 2I61A 2E3FA 2LKBA 2MZ0A 2N2RA 2N69A 2KBKA 1BRZA 1OMYA 1PX9A 4AB0A 1DQ7A 1NH5A 2KJAA 1P00A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZVG A;  1SEG A;  2B3C A;  1N4N A;  1T0Z A;  2KGQ A;  2LI7 A;  2LR3 A;  4V1D C;  1I2U A;  2KBH A;  1SN1 A;  1GPS A;  1C56 A;  2LJ7 A;  1NRA A;  1JXC A;  1NPI A;  4KYP A;  1VNB A;  1JKZ A;  3E7R L;  2E0H A;  5KK4 A;  2M8B B;  2N66 A;  1GPT A;  1I6F A;  1WWN A;  2KYQ A;  1PTX A;  2GL1 A;  2KPY A;  3E7U X;  2KBJ A;  1ICA A;  4HHF A;  1ZFU A;  2BRZ A;  1B3C A;  2LY5 A;  1JZA A;  1CN2 A;  1LQI A;  1LQH A;  2A7T A;  2NY9 X;  1ZUT A;  1B7D A;  1OZZ A;  1T7B A;  1T7E A;  4AAZ A;  2ASC A;  2LY6 A;  1CHZ A;  2YEO A;  1JZB A;  5CY0 A;  1ZYW A;  1PE4 A;  1C55 A;  1L4V A;  2NY8 X;  4HE7 A;  1MYN A;  1I2V A;  4CQK A;  1ZYV A;  1P0A A;  1BMR A;  1SN4 A;  1NRB A;  1TI5 A;  2SN3 A;  1VNA A;  1DJT A;  2KSK A;  1NE5 A;  2N2Q A;  1SNB A;  1LQQ A;  1T7A A;  1BCG A;  1WMT A;  1I6G A;  2ATB A;  1AHO A;  1ZU3 A;  2E3G A;  1WT7 A;  2LT8 A;  2YBR C;  1BK8 A;  1ZVE A;  1T1T A;  2B68 A;  1MR4 A;  1KV0 A;  1AYJ A;  4UJ0 A;  3PSM A;  2YC1 C;  1FH3 A;  2LJM A;  4AEI A;  2I61 A;  2E3F A;  2LKB A;  2MZ0 A;  2N2R A;  2N69 A;  2KBK A;  1BRZ A;  1OMY A;  1PX9 A;  4AB0 A;  1DQ7 A;  1NH5 A;  2KJA A;  1P00 A; 
#chains in the Genus database with same CATH topology
 2BUP A;  1ZVG A;  1SEG A;  2B3C A;  1N4N A;  2QWQ A;  4GNI A;  5AQJ A;  3LDO A;  1DKG D;  1T0Z A;  5EVZ A;  5FPM A;  3LDN A;  2LN8 A;  2KGQ A;  4IO8 A;  2LI7 A;  4FSV A;  5AQV A;  1NGD A;  2LR3 A;  3KC6 A;  1NGF A;  4V1D C;  3ATV A;  1I2U A;  5BPL A;  3I33 A;  3L56 A;  2G2K A;  2KBH A;  3GKU A;  3KOY A;  5AQT A;  3SF4 D;  1HX1 A;  1SN1 A;  1GPS A;  1C56 A;  2LJ7 A;  1NRA A;  5AQK A;  5EXW A;  1JXC A;  4UAD E;  5AQU A;  2QWM A;  3LDP A;  1NPI A;  4KYP A;  1VNB A;  3FZM A;  1JKZ A;  3LDL A;  3E7R L;  2E0H A;  3GDQ A;  2V7Z A;  5KK4 A;  3KHW A;  2M8B B;  2N66 A;  1GPT A;  1I6F A;  1S3X A;  1WWN A;  5BPM A;  2KYQ A;  3KP1 A;  1PTX A;  2GL1 A;  1HJO A;  2KPY A;  1NGC A;  3E7U X;  5AQR A;  5EX5 A;  2KBJ A;  1ICA A;  4HHF A;  1ZFU A;  1ATR A;  2BRZ A;  2YIO A;  1B3C A;  1NGH A;  2LY5 A;  1JZA A;  4H5R A;  1CN2 A;  2QWL A;  1POI A;  5AQZ A;  1LQI A;  1QQM A;  1LQH A;  2E88 A;  3BK3 C;  2YIL A;  5AQL A;  1BA0 A;  4UAF E;  2D56 A;  3QML A;  5F0X A;  1XRS B;  5BN9 A;  1QQO A;  2A7T A;  3D2F A;  1HPM A;  3L6Q A;  2NY9 X;  1ZUT A;  5AQH A;  3HSC A;  5FPN A;  1B7D A;  5FPD A;  1OZZ A;  5AQQ A;  4H5T A;  1NGI A;  1T7B A;  3D2F B;  1T7E A;  5BPN A;  4AAZ A;  2ASC A;  3QFP A;  2LY6 A;  1CHZ A;  2YEO A;  1JZB A;  5CY0 A;  5FPE A;  1ZYW A;  3FZL A;  4UAE F;  1PE4 A;  1KAY A;  1C55 A;  2QWR A;  3A8Y A;  5AQG A;  5AR0 A;  2NY8 X;  1L4V A;  1NGA A;  1KAZ A;  4HE7 A;  1MYN A;  1I2V A;  5AQF A;  1ZYV A;  4CQK A;  3JXU A;  3R2V A;  5AQP A;  1P0A A;  4KBO A;  1BMR A;  1SN4 A;  1NRB A;  1TI5 A;  2SN3 A;  2MBK A;  3CQX A;  5AQM A;  1VNA A;  1DJT A;  5AQI A;  2KSK A;  1NE5 A;  3KP0 A;  2N2Q A;  1SNB A;  3KOW A;  1LQQ A;  4FL9 A;  1NGE A;  1ATS A;  1T7A A;  3FZK A;  1BCG A;  1WMT A;  2K35 A;  2QWO A;  5EY4 A;  1I6G A;  2ATB A;  5AQS A;  3CW4 A;  2YIP A;  1AHO A;  2VY6 A;  3FZH A;  1BA1 A;  1ZU3 A;  2QXL A;  1NGG A;  3KOZ A;  2E3G A;  5AQW A;  1WT7 A;  2LT8 A;  2KHO A;  2YBR C;  1BK8 A;  1ZVE A;  1QQN A;  1T1T A;  1NGJ A;  2B68 A;  3QI7 A;  3GL1 A;  1MR4 A;  5F1X A;  1KV0 A;  1AYJ A;  1BUP A;  4HWI A;  2GMO A;  4UJ0 A;  3PSM A;  2YC1 C;  1YUW A;  1FH3 A;  2LJM A;  4H5N A;  1UGL A;  4AEI A;  2I61 A;  1KAX A;  3KVG A;  2E3F A;  3D2E A;  2QWN A;  3C7N A;  3FZF A;  4H5V A;  5AQN A;  5AQX A;  2MN5 A;  3ATU A;  2QW9 A;  2E8A A;  2LKB A;  3FE1 A;  1K8B A;  5BN8 A;  2JDQ D;  2MZ0 A;  2QWP A;  2N2R A;  2N69 A;  3IUC A;  3D2E B;  3C7N B;  2KBK A;  5AQY A;  1BRZ A;  2E2F A;  4H5W A;  1OMY A;  1PX9 A;  5F2R A;  4AB0 A;  3AY9 A;  1DQ7 A;  1NH5 A;  1NGB A;  5AQO A;  3L4I A;  2KJA A;  3LDQ A;  3M3Z A;  3KOX A;  3QFU A;  1P00 A; 
#chains in the Genus database with same CATH homology
 1ZVG A;  1SEG A;  2B3C A;  1N4N A;  1T0Z A;  2KGQ A;  2LI7 A;  2LR3 A;  4V1D C;  1I2U A;  2KBH A;  1SN1 A;  1GPS A;  1C56 A;  2LJ7 A;  1NRA A;  1JXC A;  1NPI A;  4KYP A;  1VNB A;  1JKZ A;  3E7R L;  2E0H A;  5KK4 A;  2M8B B;  2N66 A;  1GPT A;  1I6F A;  1WWN A;  2KYQ A;  1PTX A;  2GL1 A;  2KPY A;  3E7U X;  2KBJ A;  1ICA A;  4HHF A;  1ZFU A;  2BRZ A;  1B3C A;  2LY5 A;  1JZA A;  1CN2 A;  1LQI A;  1LQH A;  2A7T A;  2NY9 X;  1ZUT A;  1B7D A;  1OZZ A;  1T7B A;  1T7E A;  4AAZ A;  2ASC A;  2LY6 A;  1CHZ A;  2YEO A;  1JZB A;  5CY0 A;  1ZYW A;  1PE4 A;  1C55 A;  1L4V A;  2NY8 X;  4HE7 A;  1MYN A;  1I2V A;  4CQK A;  1ZYV A;  1P0A A;  1BMR A;  1SN4 A;  1NRB A;  1TI5 A;  2SN3 A;  1VNA A;  1DJT A;  2KSK A;  1NE5 A;  2N2Q A;  1SNB A;  1LQQ A;  1T7A A;  1BCG A;  1WMT A;  1I6G A;  2ATB A;  1AHO A;  1ZU3 A;  2E3G A;  1WT7 A;  2LT8 A;  2YBR C;  1BK8 A;  1ZVE A;  1T1T A;  2B68 A;  1MR4 A;  1KV0 A;  1AYJ A;  4UJ0 A;  3PSM A;  2YC1 C;  1FH3 A;  2LJM A;  4AEI A;  2I61 A;  2E3F A;  2LKB A;  2MZ0 A;  2N2R A;  2N69 A;  2KBK A;  1BRZ A;  1OMY A;  1PX9 A;  4AB0 A;  1DQ7 A;  1NH5 A;  2KJA A;  1P00 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...