2KYQA

1h, 15n, 13c chemical shifts and structure of ckr-brazzein
Total Genus 7

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
53
structure length
53
Chain Sequence
DCKRKVYENYPVSKCQLANQCNYDCKLDKHARSGECFYDEKRNLQCICDYCEY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS3 (45-52)S1 (3-8)TI1 (8-11)3H1 (13-17)O1 (3-52)S2 (36-39)AH1 (19-27)TIV1 (27-30)TI2 (28-31)TIV2 (32-35)TI3 (40-43)Updating...
connected with : NaN
molecule tags Plant protein
source organism Pentadiplandra brazzeana
publication title Structural role of the terminal disulfide bond in the sweetness of brazzein.
pubmed doi rcsb
molecule keywords Defensin-like protein
total genus 7
structure length 53
sequence length 53
ec nomenclature
pdb deposition date 2010-06-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 2kyqA00
1ZYVA 1I2VA 2SN3A 2LY6A 1I6FA 1SNBA 1NH5A 2M8BB 1PTXA 1WWNA 2N66A 2N69A 1MYNA 1C56A 2MZ0A 1NPIA 1T7EA 2KBHA 1BRZA 2KSKA 1ZVGA 2ASCA 2LJ7A 1JKZA 2YC1C 2LR3A 1C55A 2LKBA 1JZBA 1DJTA 1B7DA 1JZAA 1NRBA 2NY9X 2E3GA 2N2QA 1MR4A 1ZUTA 2LT8A 2YBRC 4V1DC 2ATBA 5CY0A 5KK4A 1VNBA 2A7TA 1JXCA 4HHFA 1LQHA 2KBJA 2E0HA 1LQQA 1BCGA 4CQKA 1OMYA 1ICAA 1OZZA 2GL1A 1I2UA 2B3CA 2N2RA 4UJ0A 1AYJA 1DQ7A 1BMRA 1CN2A 1VNAA 3PSMA 2KYQA 2LJMA 2KBKA 1NRAA 1ZU3A 3E7UX 1AHOA 1WMTA 1T7AA 3E7RL 4HE7A 2E3FA 1B3CA 2YEOA 1ZVEA 2BRZA 4KYPA 1L4VA 1LQIA 1T1TA 1PE4A 2B68A 2LI7A 2I61A 1PX9A 2KGQA 1P00A 1I6GA 1T0ZA 1SN4A 2KJAA 4AAZA 1WT7A 2KPYA 1P0AA 4AB0A 2NY8X 1ZYWA 1N4NA 1GPSA 4AEIA 1TI5A 1NE5A 2LY5A 1SEGA 1ZFUA 1T7BA 1SN1A 1FH3A 1BK8A 1KV0A 1GPTA 1CHZA
chains in the Genus database with same CATH superfamily
1ZYVA 2YIOA 2SN3A 4H5WA 5EVZA 2LY6A 1I6FA 1SNBA 1I2VA 5F2RA 1NH5A 5FPMA 5AQOA 3IUCA 1HPMA 2M8BB 3GDQA 1PTXA 1WWNA 1NGIA 2N66A 2N69A 3A8YA 1MYNA 5EX5A 5F0XA 2YILA 1C56A 2QWOA 1NGEA 2MZ0A 1NPIA 3SF4D 1T7EA 3ATUA 3FZHA 5AQQA 4UADE 3D2EA 5AQGA 2KBHA 3CQXA 3FZKA 1BRZA 2KSKA 2D56A 2V7ZA 5AQLA 1ZVGA 2ASCA 2LJ7A 1QQOA 2QWRA 1JKZA 2YC1C 3L6QA 1POIA 1YUWA 2LR3A 1C55A 3D2FA 1NGAA 2LKBA 3M3ZA 1ATSA 4GNIA 1JZBA 5AQHA 1DJTA 3D2EB 5AQJA 2G2KA 2QXLA 1B7DA 1JZAA 1NRBA 2NY9X 1NGFA 5AQVA 2E3GA 2N2QA 1MR4A 1ZUTA 2LT8A 5AQYA 2YBRC 2QWMA 4V1DC 2ATBA 3FZMA 4UAFE 3D2FB 1QQMA 3L56A 5CY0A 1QQNA 3I33A 5BN8A 3FE1A 5KK4A 1VNBA 2A7TA 1JXCA 3C7NA 4HHFA 1LQHA 5AQXA 2KBJA 2E0HA 1LQQA 5AR0A 3JXUA 1BCGA 4CQKA 3KOZA 3GKUA 1OMYA 1ICAA 1OZZA 2GL1A 3FZFA 3QMLA 5AQPA 2MN5A 1I2UA 5AQNA 1ATRA 5FPEA 3KHWA 2B3CA 1DKGD 2N2RA 1K8BA 5AQSA 3LDQA 3C7NB 4UJ0A 3KOWA 2QWLA 2GMOA 2QWPA 5BPMA 1HX1A 3GL1A 3HSCA 1XRSB 2LN8A 1AYJA 1DQ7A 5FPNA 2KHOA 5BPNA 1BMRA 1NGCA 1CN2A 1VNAA 3CW4A 3PSMA 2KYQA 5F1XA 2LJMA 2KBKA 1NRAA 3R2VA 1KAXA 1ZU3A 3LDPA 3E7UX 5AQIA 1AHOA 1WMTA 3QFPA 5AQZA 1T7AA 1NGBA 2YIPA 2BUPA 3E7RL 4HE7A 2E3FA 3KVGA 5BPLA 3QI7A 1BA0A 1KAYA 1B3CA 2YEOA 4FSVA 2QWQA 2MBKA 3KOYA 1ZVEA 1KAZA 2BRZA 2QWNA 3QFUA 4KYPA 1NGDA 1LQIA 1T1TA 3BK3C 1L4VA 2K35A 1PE4A 1BUPA 2QW9A 3FZLA 4FL9A 2B68A 4HWIA 2E2FA 2LI7A 3ATVA 2JDQD 2I61A 1PX9A 2KGQA 1P00A 3KP1A 3LDLA 4UAEF 5AQTA 1I6GA 1UGLA 1T0ZA 3LDNA 1SN4A 2KJAA 4AAZA 5AQKA 1WT7A 5AQFA 2KPYA 1NGGA 3LDOA 1P0AA 1NGHA 4H5RA 4H5TA 4AB0A 2NY8X 1ZYWA 1N4NA 2E88A 3KC6A 5AQRA 1GPSA 2E8AA 5BN9A 1BA1A 5EXWA 5AQWA 4H5VA 4H5NA 4AEIA 3KP0A 1TI5A 1NE5A 2LY5A 5AQMA 1SEGA 1ZFUA 3KOXA 5EY4A 5FPDA 1T7BA 1S3XA 1SN1A 5AQUA 1FH3A 1BK8A 1KV0A 1GPTA 1CHZA 1NGJA 3AY9A 4KBOA 2VY6A 1HJOA 3L4IA 4IO8A
chains in the Genus database with same CATH topology
1ZYVA 1I2VA 2SN3A 2LY6A 1I6FA 1SNBA 1NH5A 2M8BB 1PTXA 1WWNA 2N66A 2N69A 1MYNA 1C56A 2MZ0A 1NPIA 1T7EA 2KBHA 1BRZA 2KSKA 1ZVGA 2ASCA 2LJ7A 1JKZA 2YC1C 2LR3A 1C55A 2LKBA 1JZBA 1DJTA 1B7DA 1JZAA 1NRBA 2NY9X 2E3GA 2N2QA 1MR4A 1ZUTA 2LT8A 2YBRC 4V1DC 2ATBA 5CY0A 5KK4A 1VNBA 2A7TA 1JXCA 4HHFA 1LQHA 2KBJA 2E0HA 1LQQA 1BCGA 4CQKA 1OMYA 1ICAA 1OZZA 2GL1A 1I2UA 2B3CA 2N2RA 4UJ0A 1AYJA 1DQ7A 1BMRA 1CN2A 1VNAA 3PSMA 2KYQA 2LJMA 2KBKA 1NRAA 1ZU3A 3E7UX 1AHOA 1WMTA 1T7AA 3E7RL 4HE7A 2E3FA 1B3CA 2YEOA 1ZVEA 2BRZA 4KYPA 1L4VA 1LQIA 1T1TA 1PE4A 2B68A 2LI7A 2I61A 1PX9A 2KGQA 1P00A 1I6GA 1T0ZA 1SN4A 2KJAA 4AAZA 1WT7A 2KPYA 1P0AA 4AB0A 2NY8X 1ZYWA 1N4NA 1GPSA 4AEIA 1TI5A 1NE5A 2LY5A 1SEGA 1ZFUA 1T7BA 1SN1A 1FH3A 1BK8A 1KV0A 1GPTA 1CHZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZYV A;  1I2V A;  2SN3 A;  2LY6 A;  1I6F A;  1SNB A;  1NH5 A;  2M8B B;  1PTX A;  1WWN A;  2N66 A;  2N69 A;  1MYN A;  1C56 A;  2MZ0 A;  1NPI A;  1T7E A;  2KBH A;  1BRZ A;  2KSK A;  1ZVG A;  2ASC A;  2LJ7 A;  1JKZ A;  2YC1 C;  2LR3 A;  1C55 A;  2LKB A;  1JZB A;  1DJT A;  1B7D A;  1JZA A;  1NRB A;  2NY9 X;  2E3G A;  2N2Q A;  1MR4 A;  1ZUT A;  2LT8 A;  2YBR C;  4V1D C;  2ATB A;  5CY0 A;  5KK4 A;  1VNB A;  2A7T A;  1JXC A;  4HHF A;  1LQH A;  2KBJ A;  2E0H A;  1LQQ A;  1BCG A;  4CQK A;  1OMY A;  1ICA A;  1OZZ A;  2GL1 A;  1I2U A;  2B3C A;  2N2R A;  4UJ0 A;  1AYJ A;  1DQ7 A;  1BMR A;  1CN2 A;  1VNA A;  3PSM A;  2KYQ A;  2LJM A;  2KBK A;  1NRA A;  1ZU3 A;  3E7U X;  1AHO A;  1WMT A;  1T7A A;  3E7R L;  4HE7 A;  2E3F A;  1B3C A;  2YEO A;  1ZVE A;  2BRZ A;  4KYP A;  1L4V A;  1LQI A;  1T1T A;  1PE4 A;  2B68 A;  2LI7 A;  2I61 A;  1PX9 A;  2KGQ A;  1P00 A;  1I6G A;  1T0Z A;  1SN4 A;  2KJA A;  4AAZ A;  1WT7 A;  2KPY A;  1P0A A;  4AB0 A;  2NY8 X;  1ZYW A;  1N4N A;  1GPS A;  4AEI A;  1TI5 A;  1NE5 A;  2LY5 A;  1SEG A;  1ZFU A;  1T7B A;  1SN1 A;  1FH3 A;  1BK8 A;  1KV0 A;  1GPT A;  1CHZ A; 
#chains in the Genus database with same CATH topology
 1ZYV A;  2YIO A;  2SN3 A;  4H5W A;  5EVZ A;  2LY6 A;  1I6F A;  1SNB A;  1I2V A;  5F2R A;  1NH5 A;  5FPM A;  5AQO A;  3IUC A;  1HPM A;  2M8B B;  3GDQ A;  1PTX A;  1WWN A;  1NGI A;  2N66 A;  2N69 A;  3A8Y A;  1MYN A;  5EX5 A;  5F0X A;  2YIL A;  1C56 A;  2QWO A;  1NGE A;  2MZ0 A;  1NPI A;  3SF4 D;  1T7E A;  3ATU A;  3FZH A;  5AQQ A;  4UAD E;  3D2E A;  5AQG A;  2KBH A;  3CQX A;  3FZK A;  1BRZ A;  2KSK A;  2D56 A;  2V7Z A;  5AQL A;  1ZVG A;  2ASC A;  2LJ7 A;  1QQO A;  2QWR A;  1JKZ A;  2YC1 C;  3L6Q A;  1POI A;  1YUW A;  2LR3 A;  1C55 A;  3D2F A;  1NGA A;  2LKB A;  3M3Z A;  1ATS A;  4GNI A;  1JZB A;  5AQH A;  1DJT A;  3D2E B;  5AQJ A;  2G2K A;  2QXL A;  1B7D A;  1JZA A;  1NRB A;  2NY9 X;  1NGF A;  5AQV A;  2E3G A;  2N2Q A;  1MR4 A;  1ZUT A;  2LT8 A;  5AQY A;  2YBR C;  2QWM A;  4V1D C;  2ATB A;  3FZM A;  4UAF E;  3D2F B;  1QQM A;  3L56 A;  5CY0 A;  1QQN A;  3I33 A;  5BN8 A;  3FE1 A;  5KK4 A;  1VNB A;  2A7T A;  1JXC A;  3C7N A;  4HHF A;  1LQH A;  5AQX A;  2KBJ A;  2E0H A;  1LQQ A;  5AR0 A;  3JXU A;  1BCG A;  4CQK A;  3KOZ A;  3GKU A;  1OMY A;  1ICA A;  1OZZ A;  2GL1 A;  3FZF A;  3QML A;  5AQP A;  2MN5 A;  1I2U A;  5AQN A;  1ATR A;  5FPE A;  3KHW A;  2B3C A;  1DKG D;  2N2R A;  1K8B A;  5AQS A;  3LDQ A;  3C7N B;  4UJ0 A;  3KOW A;  2QWL A;  2GMO A;  2QWP A;  5BPM A;  1HX1 A;  3GL1 A;  3HSC A;  1XRS B;  2LN8 A;  1AYJ A;  1DQ7 A;  5FPN A;  2KHO A;  5BPN A;  1BMR A;  1NGC A;  1CN2 A;  1VNA A;  3CW4 A;  3PSM A;  2KYQ A;  5F1X A;  2LJM A;  2KBK A;  1NRA A;  3R2V A;  1KAX A;  1ZU3 A;  3LDP A;  3E7U X;  5AQI A;  1AHO A;  1WMT A;  3QFP A;  5AQZ A;  1T7A A;  1NGB A;  2YIP A;  2BUP A;  3E7R L;  4HE7 A;  2E3F A;  3KVG A;  5BPL A;  3QI7 A;  1BA0 A;  1KAY A;  1B3C A;  2YEO A;  4FSV A;  2QWQ A;  2MBK A;  3KOY A;  1ZVE A;  1KAZ A;  2BRZ A;  2QWN A;  3QFU A;  4KYP A;  1NGD A;  1LQI A;  1T1T A;  3BK3 C;  1L4V A;  2K35 A;  1PE4 A;  1BUP A;  2QW9 A;  3FZL A;  4FL9 A;  2B68 A;  4HWI A;  2E2F A;  2LI7 A;  3ATV A;  2JDQ D;  2I61 A;  1PX9 A;  2KGQ A;  1P00 A;  3KP1 A;  3LDL A;  4UAE F;  5AQT A;  1I6G A;  1UGL A;  1T0Z A;  3LDN A;  1SN4 A;  2KJA A;  4AAZ A;  5AQK A;  1WT7 A;  5AQF A;  2KPY A;  1NGG A;  3LDO A;  1P0A A;  1NGH A;  4H5R A;  4H5T A;  4AB0 A;  2NY8 X;  1ZYW A;  1N4N A;  2E88 A;  3KC6 A;  5AQR A;  1GPS A;  2E8A A;  5BN9 A;  1BA1 A;  5EXW A;  5AQW A;  4H5V A;  4H5N A;  4AEI A;  3KP0 A;  1TI5 A;  1NE5 A;  2LY5 A;  5AQM A;  1SEG A;  1ZFU A;  3KOX A;  5EY4 A;  5FPD A;  1T7B A;  1S3X A;  1SN1 A;  5AQU A;  1FH3 A;  1BK8 A;  1KV0 A;  1GPT A;  1CHZ A;  1NGJ A;  3AY9 A;  4KBO A;  2VY6 A;  1HJO A;  3L4I A;  4IO8 A; 
#chains in the Genus database with same CATH homology
 1ZYV A;  1I2V A;  2SN3 A;  2LY6 A;  1I6F A;  1SNB A;  1NH5 A;  2M8B B;  1PTX A;  1WWN A;  2N66 A;  2N69 A;  1MYN A;  1C56 A;  2MZ0 A;  1NPI A;  1T7E A;  2KBH A;  1BRZ A;  2KSK A;  1ZVG A;  2ASC A;  2LJ7 A;  1JKZ A;  2YC1 C;  2LR3 A;  1C55 A;  2LKB A;  1JZB A;  1DJT A;  1B7D A;  1JZA A;  1NRB A;  2NY9 X;  2E3G A;  2N2Q A;  1MR4 A;  1ZUT A;  2LT8 A;  2YBR C;  4V1D C;  2ATB A;  5CY0 A;  5KK4 A;  1VNB A;  2A7T A;  1JXC A;  4HHF A;  1LQH A;  2KBJ A;  2E0H A;  1LQQ A;  1BCG A;  4CQK A;  1OMY A;  1ICA A;  1OZZ A;  2GL1 A;  1I2U A;  2B3C A;  2N2R A;  4UJ0 A;  1AYJ A;  1DQ7 A;  1BMR A;  1CN2 A;  1VNA A;  3PSM A;  2KYQ A;  2LJM A;  2KBK A;  1NRA A;  1ZU3 A;  3E7U X;  1AHO A;  1WMT A;  1T7A A;  3E7R L;  4HE7 A;  2E3F A;  1B3C A;  2YEO A;  1ZVE A;  2BRZ A;  4KYP A;  1L4V A;  1LQI A;  1T1T A;  1PE4 A;  2B68 A;  2LI7 A;  2I61 A;  1PX9 A;  2KGQ A;  1P00 A;  1I6G A;  1T0Z A;  1SN4 A;  2KJA A;  4AAZ A;  1WT7 A;  2KPY A;  1P0A A;  4AB0 A;  2NY8 X;  1ZYW A;  1N4N A;  1GPS A;  4AEI A;  1TI5 A;  1NE5 A;  2LY5 A;  1SEG A;  1ZFU A;  1T7B A;  1SN1 A;  1FH3 A;  1BK8 A;  1KV0 A;  1GPT A;  1CHZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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