2LY6A

Refined solution structure of recombinant brazzein at low temperature
Total Genus 7

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
53
structure length
53
Chain Sequence
DKCKKVYENYPVSKCQLANQCNYDCKLDKHARSGECFYDEKRNLQCICDYCEY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (2-5)S1 (5-7)S3 (45-50)O1 (4-52)TIV1 (9-12)TI5 (40-43)TIV2 (11-14)TI3 (14-17)AH1 (19-30)TIV4 (32-35)S2 (36-39)Updating...
connected with : NaN
molecule tags Plant protein
source organism Pentadiplandra brazzeana
publication title Temperature-dependent conformational change affecting Tyr11 and sweetness loops of brazzein.
pubmed doi rcsb
molecule keywords Defensin-like protein
total genus 7
structure length 53
sequence length 53
ec nomenclature
pdb deposition date 2012-09-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 2ly6A00
1BRZA 2KJAA 1LQQA 1L4VA 2NY8X 1PTXA 2ASCA 1T0ZA 1BCGA 1SNBA 1OZZA 1MYNA 2B68A 4AEIA 1B3CA 1CHZA 3E7RL 2YBRC 1ZUTA 2A7TA 1ZYWA 2E3GA 1NRBA 1TI5A 2LI7A 2SN3A 1P00A 1LQHA 1I6GA 2N2RA 1FH3A 2LY5A 1C55A 1I2UA 1NE5A 4HE7A 1WMTA 2ATBA 1WT7A 1ZU3A 2I61A 1AYJA 2N69A 2KGQA 1P0AA 1MR4A 2GL1A 5CY0A 1JXCA 5KK4A 1T7AA 2E3FA 2KPYA 4V1DC 2LKBA 1NRAA 1DQ7A 2KBHA 2N2QA 1T1TA 2KBKA 4AAZA 2LY6A 1C56A 4UJ0A 1SN4A 1AHOA 1NH5A 1KV0A 1ICAA 1T7BA 1WWNA 1JZAA 1I6FA 1SN1A 4HHFA 1T7EA 1CN2A 1BK8A 1VNBA 2YC1C 3PSMA 2E0HA 2N66A 1BMRA 3E7UX 2KBJA 1JKZA 1PE4A 2LJMA 2NY9X 4CQKA 2LT8A 2B3CA 1SEGA 2LJ7A 1DJTA 1OMYA 2KYQA 2BRZA 1PX9A 2YEOA 1ZVEA 2MZ0A 4AB0A 1JZBA 1NPIA 1ZVGA 1ZYVA 2KSKA 1VNAA 1GPTA 1GPSA 1I2VA 1LQIA 1ZFUA 2M8BB 4KYPA 1B7DA 1N4NA 2LR3A
chains in the Genus database with same CATH superfamily
1BRZA 2QWOA 3C7NA 3D2FB 5AQIA 2KJAA 5AQWA 3L56A 1HPMA 1BUPA 1LQQA 3D2FA 1B7DA 2V7ZA 2KHOA 3CQXA 4H5RA 1L4VA 1K8BA 2NY8X 1PTXA 2ASCA 1T0ZA 1BCGA 3GKUA 3LDQA 1SNBA 1OZZA 1MYNA 2B68A 3QFUA 1NGDA 4AEIA 1B3CA 1QQOA 2K35A 4H5WA 1NGAA 1CHZA 3E7RL 5AQMA 2QWPA 2QWLA 1HJOA 5BPLA 2YBRC 1KAZA 3BK3C 1ZUTA 2A7TA 3FZKA 3D2EB 1ZYWA 1NGJA 2E3GA 1NGCA 1NRBA 1TI5A 3D2EA 3KHWA 2QWQA 2GMOA 2E88A 2LI7A 3KP0A 5BN9A 3FZFA 2SN3A 1P00A 1LQHA 1I6GA 2N2RA 1FH3A 2E8AA 4UAEF 3LDOA 1HX1A 2LY5A 1POIA 1C55A 1I2UA 1UGLA 3M3ZA 2QW9A 1BA0A 3L6QA 4HE7A 3KOXA 1WMTA 3KOWA 2ATBA 1WT7A 1NGGA 1ZU3A 1NGHA 2D56A 2G2KA 2I61A 5F2RA 1XRSB 1AYJA 2N69A 5EVZA 2QXLA 2KGQA 2MN5A 1P0AA 1MR4A 2GL1A 2QWNA 2YILA 3AY9A 1JXCA 3L4IA 3R2VA 4IO8A 5CY0A 4H5TA 5KK4A 1T7AA 2E3FA 3GDQA 3FZLA 3SF4D 4H5NA 2KPYA 4V1DC 3LDNA 1ATSA 2LKBA 2JDQD 5AQLA 1NRAA 1NGBA 1DQ7A 3KP1A 2KBHA 1KAXA 2YIOA 3LDLA 2N2QA 3LDPA 1T1TA 5AQZA 5AR0A 2LR3A 1KAYA 1QQMA 2KBKA 3ATVA 3KOZA 4AAZA 2LY6A 1C56A 4UJ0A 1SN4A 3QI7A 1AHOA 1NH5A 5BPNA 5AQFA 1KV0A 5FPNA 5F0XA 1ICAA 1T7BA 1WWNA 4UADE 1JZAA 1YUWA 3GL1A 1I6FA 2QWMA 4KBOA 1BA1A 5AQSA 1SN1A 5EX5A 4HHFA 1T7EA 1CN2A 3JXUA 1BK8A 5EXWA 2LN8A 2QWRA 5AQNA 1NGIA 5AQJA 5AQHA 1DKGD 1VNBA 2YC1C 4FL9A 4FSVA 3PSMA 5FPDA 4GNIA 2E0HA 2N66A 4H5VA 1BMRA 3E7UX 3IUCA 1NGFA 3QMLA 5AQOA 3FZMA 1S3XA 4HWIA 5FPEA 5AQTA 5AQXA 5AQKA 2YIPA 2E2FA 4UAFE 5AQVA 2KBJA 5AQPA 3A8YA 1JKZA 1PE4A 2LJMA 2NY9X 3QFPA 5AQGA 4CQKA 2B3CA 2LT8A 5AQRA 1SEGA 2LJ7A 3KOYA 1DJTA 1OMYA 2KYQA 2BRZA 1PX9A 2YEOA 1ZVEA 2MZ0A 1ATRA 1QQNA 5BPMA 3I33A 3ATUA 5BN8A 4AB0A 1JZBA 5EY4A 1NPIA 1ZVGA 1ZYVA 2KSKA 3CW4A 5F1XA 5FPMA 2BUPA 3FE1A 1VNAA 1GPTA 3HSCA 1GPSA 1I2VA 3KC6A 3KVGA 1LQIA 3C7NB 2VY6A 1ZFUA 2M8BB 2MBKA 5AQYA 3FZHA 4KYPA 5AQQA 1NGEA 1N4NA 1NE5A 5AQUA
chains in the Genus database with same CATH topology
1BRZA 2KJAA 1LQQA 1L4VA 2NY8X 1PTXA 2ASCA 1T0ZA 1BCGA 1SNBA 1OZZA 1MYNA 2B68A 4AEIA 1B3CA 1CHZA 3E7RL 2YBRC 1ZUTA 2A7TA 1ZYWA 2E3GA 1NRBA 1TI5A 2LI7A 2SN3A 1P00A 1LQHA 1I6GA 2N2RA 1FH3A 2LY5A 1C55A 1I2UA 1NE5A 4HE7A 1WMTA 2ATBA 1WT7A 1ZU3A 2I61A 1AYJA 2N69A 2KGQA 1P0AA 1MR4A 2GL1A 5CY0A 1JXCA 5KK4A 1T7AA 2E3FA 2KPYA 4V1DC 2LKBA 1NRAA 1DQ7A 2KBHA 2N2QA 1T1TA 2KBKA 4AAZA 2LY6A 1C56A 4UJ0A 1SN4A 1AHOA 1NH5A 1KV0A 1ICAA 1T7BA 1WWNA 1JZAA 1I6FA 1SN1A 4HHFA 1T7EA 1CN2A 1BK8A 1VNBA 2YC1C 3PSMA 2E0HA 2N66A 1BMRA 3E7UX 2KBJA 1JKZA 1PE4A 2LJMA 2NY9X 4CQKA 2LT8A 2B3CA 1SEGA 2LJ7A 1DJTA 1OMYA 2KYQA 2BRZA 1PX9A 2YEOA 1ZVEA 2MZ0A 4AB0A 1JZBA 1NPIA 1ZVGA 1ZYVA 2KSKA 1VNAA 1GPTA 1GPSA 1I2VA 1LQIA 1ZFUA 2M8BB 4KYPA 1B7DA 1N4NA 2LR3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BRZ A;  2KJA A;  1LQQ A;  1L4V A;  2NY8 X;  1PTX A;  2ASC A;  1T0Z A;  1BCG A;  1SNB A;  1OZZ A;  1MYN A;  2B68 A;  4AEI A;  1B3C A;  1CHZ A;  3E7R L;  2YBR C;  1ZUT A;  2A7T A;  1ZYW A;  2E3G A;  1NRB A;  1TI5 A;  2LI7 A;  2SN3 A;  1P00 A;  1LQH A;  1I6G A;  2N2R A;  1FH3 A;  2LY5 A;  1C55 A;  1I2U A;  1NE5 A;  4HE7 A;  1WMT A;  2ATB A;  1WT7 A;  1ZU3 A;  2I61 A;  1AYJ A;  2N69 A;  2KGQ A;  1P0A A;  1MR4 A;  2GL1 A;  5CY0 A;  1JXC A;  5KK4 A;  1T7A A;  2E3F A;  2KPY A;  4V1D C;  2LKB A;  1NRA A;  1DQ7 A;  2KBH A;  2N2Q A;  1T1T A;  2KBK A;  4AAZ A;  2LY6 A;  1C56 A;  4UJ0 A;  1SN4 A;  1AHO A;  1NH5 A;  1KV0 A;  1ICA A;  1T7B A;  1WWN A;  1JZA A;  1I6F A;  1SN1 A;  4HHF A;  1T7E A;  1CN2 A;  1BK8 A;  1VNB A;  2YC1 C;  3PSM A;  2E0H A;  2N66 A;  1BMR A;  3E7U X;  2KBJ A;  1JKZ A;  1PE4 A;  2LJM A;  2NY9 X;  4CQK A;  2LT8 A;  2B3C A;  1SEG A;  2LJ7 A;  1DJT A;  1OMY A;  2KYQ A;  2BRZ A;  1PX9 A;  2YEO A;  1ZVE A;  2MZ0 A;  4AB0 A;  1JZB A;  1NPI A;  1ZVG A;  1ZYV A;  2KSK A;  1VNA A;  1GPT A;  1GPS A;  1I2V A;  1LQI A;  1ZFU A;  2M8B B;  4KYP A;  1B7D A;  1N4N A;  2LR3 A; 
#chains in the Genus database with same CATH topology
 1BRZ A;  2QWO A;  3C7N A;  3D2F B;  5AQI A;  2KJA A;  5AQW A;  3L56 A;  1HPM A;  1BUP A;  1LQQ A;  3D2F A;  1B7D A;  2V7Z A;  2KHO A;  3CQX A;  4H5R A;  1L4V A;  1K8B A;  2NY8 X;  1PTX A;  2ASC A;  1T0Z A;  1BCG A;  3GKU A;  3LDQ A;  1SNB A;  1OZZ A;  1MYN A;  2B68 A;  3QFU A;  1NGD A;  4AEI A;  1B3C A;  1QQO A;  2K35 A;  4H5W A;  1NGA A;  1CHZ A;  3E7R L;  5AQM A;  2QWP A;  2QWL A;  1HJO A;  5BPL A;  2YBR C;  1KAZ A;  3BK3 C;  1ZUT A;  2A7T A;  3FZK A;  3D2E B;  1ZYW A;  1NGJ A;  2E3G A;  1NGC A;  1NRB A;  1TI5 A;  3D2E A;  3KHW A;  2QWQ A;  2GMO A;  2E88 A;  2LI7 A;  3KP0 A;  5BN9 A;  3FZF A;  2SN3 A;  1P00 A;  1LQH A;  1I6G A;  2N2R A;  1FH3 A;  2E8A A;  4UAE F;  3LDO A;  1HX1 A;  2LY5 A;  1POI A;  1C55 A;  1I2U A;  1UGL A;  3M3Z A;  2QW9 A;  1BA0 A;  3L6Q A;  4HE7 A;  3KOX A;  1WMT A;  3KOW A;  2ATB A;  1WT7 A;  1NGG A;  1ZU3 A;  1NGH A;  2D56 A;  2G2K A;  2I61 A;  5F2R A;  1XRS B;  1AYJ A;  2N69 A;  5EVZ A;  2QXL A;  2KGQ A;  2MN5 A;  1P0A A;  1MR4 A;  2GL1 A;  2QWN A;  2YIL A;  3AY9 A;  1JXC A;  3L4I A;  3R2V A;  4IO8 A;  5CY0 A;  4H5T A;  5KK4 A;  1T7A A;  2E3F A;  3GDQ A;  3FZL A;  3SF4 D;  4H5N A;  2KPY A;  4V1D C;  3LDN A;  1ATS A;  2LKB A;  2JDQ D;  5AQL A;  1NRA A;  1NGB A;  1DQ7 A;  3KP1 A;  2KBH A;  1KAX A;  2YIO A;  3LDL A;  2N2Q A;  3LDP A;  1T1T A;  5AQZ A;  5AR0 A;  2LR3 A;  1KAY A;  1QQM A;  2KBK A;  3ATV A;  3KOZ A;  4AAZ A;  2LY6 A;  1C56 A;  4UJ0 A;  1SN4 A;  3QI7 A;  1AHO A;  1NH5 A;  5BPN A;  5AQF A;  1KV0 A;  5FPN A;  5F0X A;  1ICA A;  1T7B A;  1WWN A;  4UAD E;  1JZA A;  1YUW A;  3GL1 A;  1I6F A;  2QWM A;  4KBO A;  1BA1 A;  5AQS A;  1SN1 A;  5EX5 A;  4HHF A;  1T7E A;  1CN2 A;  3JXU A;  1BK8 A;  5EXW A;  2LN8 A;  2QWR A;  5AQN A;  1NGI A;  5AQJ A;  5AQH A;  1DKG D;  1VNB A;  2YC1 C;  4FL9 A;  4FSV A;  3PSM A;  5FPD A;  4GNI A;  2E0H A;  2N66 A;  4H5V A;  1BMR A;  3E7U X;  3IUC A;  1NGF A;  3QML A;  5AQO A;  3FZM A;  1S3X A;  4HWI A;  5FPE A;  5AQT A;  5AQX A;  5AQK A;  2YIP A;  2E2F A;  4UAF E;  5AQV A;  2KBJ A;  5AQP A;  3A8Y A;  1JKZ A;  1PE4 A;  2LJM A;  2NY9 X;  3QFP A;  5AQG A;  4CQK A;  2B3C A;  2LT8 A;  5AQR A;  1SEG A;  2LJ7 A;  3KOY A;  1DJT A;  1OMY A;  2KYQ A;  2BRZ A;  1PX9 A;  2YEO A;  1ZVE A;  2MZ0 A;  1ATR A;  1QQN A;  5BPM A;  3I33 A;  3ATU A;  5BN8 A;  4AB0 A;  1JZB A;  5EY4 A;  1NPI A;  1ZVG A;  1ZYV A;  2KSK A;  3CW4 A;  5F1X A;  5FPM A;  2BUP A;  3FE1 A;  1VNA A;  1GPT A;  3HSC A;  1GPS A;  1I2V A;  3KC6 A;  3KVG A;  1LQI A;  3C7N B;  2VY6 A;  1ZFU A;  2M8B B;  2MBK A;  5AQY A;  3FZH A;  4KYP A;  5AQQ A;  1NGE A;  1N4N A;  1NE5 A;  5AQU A; 
#chains in the Genus database with same CATH homology
 1BRZ A;  2KJA A;  1LQQ A;  1L4V A;  2NY8 X;  1PTX A;  2ASC A;  1T0Z A;  1BCG A;  1SNB A;  1OZZ A;  1MYN A;  2B68 A;  4AEI A;  1B3C A;  1CHZ A;  3E7R L;  2YBR C;  1ZUT A;  2A7T A;  1ZYW A;  2E3G A;  1NRB A;  1TI5 A;  2LI7 A;  2SN3 A;  1P00 A;  1LQH A;  1I6G A;  2N2R A;  1FH3 A;  2LY5 A;  1C55 A;  1I2U A;  1NE5 A;  4HE7 A;  1WMT A;  2ATB A;  1WT7 A;  1ZU3 A;  2I61 A;  1AYJ A;  2N69 A;  2KGQ A;  1P0A A;  1MR4 A;  2GL1 A;  5CY0 A;  1JXC A;  5KK4 A;  1T7A A;  2E3F A;  2KPY A;  4V1D C;  2LKB A;  1NRA A;  1DQ7 A;  2KBH A;  2N2Q A;  1T1T A;  2KBK A;  4AAZ A;  2LY6 A;  1C56 A;  4UJ0 A;  1SN4 A;  1AHO A;  1NH5 A;  1KV0 A;  1ICA A;  1T7B A;  1WWN A;  1JZA A;  1I6F A;  1SN1 A;  4HHF A;  1T7E A;  1CN2 A;  1BK8 A;  1VNB A;  2YC1 C;  3PSM A;  2E0H A;  2N66 A;  1BMR A;  3E7U X;  2KBJ A;  1JKZ A;  1PE4 A;  2LJM A;  2NY9 X;  4CQK A;  2LT8 A;  2B3C A;  1SEG A;  2LJ7 A;  1DJT A;  1OMY A;  2KYQ A;  2BRZ A;  1PX9 A;  2YEO A;  1ZVE A;  2MZ0 A;  4AB0 A;  1JZB A;  1NPI A;  1ZVG A;  1ZYV A;  2KSK A;  1VNA A;  1GPT A;  1GPS A;  1I2V A;  1LQI A;  1ZFU A;  2M8B B;  4KYP A;  1B7D A;  1N4N A;  2LR3 A; 
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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