2MBKA

The clip-segment of the von willebrand domain 1 of the bmp modulator protein crossveinless 2 is preformed
Total Genus 5

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
67
structure length
67
Chain Sequence
WLITGTEASCENEGEVLHIPNITDNPCISCVCLNQKAECKQEKCAPLAEDCALVVKQTGACCEKCKG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
O3 (9-31)TIV2 (11-14)S3 (35-36)S2 (31-32)O1 (30-32)TIV3 (18-21)TIV5 (20-23)TIV6 (21-24)S1 (27-28)TVIII1 (22-25)O4 (26-60)S4 (39-40)O2 (36-38)TIV7 (31-34)O6 (43-61)O7 (50-64)TVIII2 (52-55)TIV10 (56-59)Updating...
connected with : NaN
molecule tags Signaling protein
source organism Danio rerio
publication title The Clip-Segment of the von Willebrand Domain 1 of the BMP Modulator Protein Crossveinless 2 Is Preformed.
pubmed doi rcsb
molecule keywords Crossveinless 2
total genus 5
structure length 67
sequence length 67
ec nomenclature
pdb deposition date 2013-08-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.190 Alpha Beta 2-Layer Sandwich Defensin A-like Defensin A-like 2mbkA00
3BK3C 2MBKA
chains in the Genus database with same CATH superfamily
1UGLA 4HHFA 3LDNA 2QWLA 5AQMA 1N4NA 2K35A 2LT8A 3C7NA 5BN8A 2KGQA 4HWIA 5EX5A 5KK4A 2E8AA 5AQWA 2YEOA 4V1DC 1XRSB 1C55A 2QW9A 3FZKA 2KHOA 3GL1A 1P0AA 3QI7A 2YIPA 4IO8A 4UJ0A 5FPDA 1WWNA 2QWMA 5AQYA 1NGEA 1T7AA 2KBKA 3D2FB 3JXUA 1ZYVA 2E88A 1NGCA 1OMYA 1BCGA 1LQQA 3R2VA 1P00A 1SN4A 1SN1A 3KP1A 2GMOA 1FH3A 1B7DA 1NH5A 3LDOA 3LDPA 3KOWA 5AQGA 2KPYA 1NGAA 3HSCA 3D2EA 2MN5A 1VNAA 2E0HA 5EY4A 1HJOA 3ATVA 1NGJA 1NRBA 1SNBA 3KHWA 2LJMA 1CHZA 1BA1A 2MBKA 2LJ7A 1QQMA 2LY5A 1T7EA 2E3GA 2D56A 3FE1A 3SF4D 1I2VA 1ATSA 1MR4A 1QQNA 1VNBA 3IUCA 1CN2A 1NGFA 3M3ZA 1NGHA 2KYQA 3L4IA 2I61A 3KVGA 1NGDA 2QWNA 2QWOA 3ATUA 1BK8A 1KV0A 5AQOA 1NPIA 2GL1A 1T0ZA 2JDQD 2QWRA 2YBRC 1SEGA 5BPLA 1ICAA 5AQHA 1DJTA 1S3XA 1JXCA 1ZFUA 3LDLA 4H5WA 1LQIA 4UAFE 1YUWA 2BRZA 3C7NB 2B3CA 4KBOA 1BA0A 1TI5A 5BPNA 1OZZA 3D2FA 3FZHA 1GPSA 3QFPA 3L56A 5AQVA 1ATRA 1LQHA 1MYNA 4GNIA 1HX1A 1PTXA 2QWQA 4UAEF 2YIOA 2A7TA 1QQOA 1T7BA 1NE5A 1KAZA 1I6FA 2LR3A 1DKGD 5AQIA 3GDQA 3PSMA 1KAYA 5FPMA 1JKZA 5EVZA 1I6GA 2MZ0A 4HE7A 1BRZA 2KSKA 2E2FA 1NGBA 4FSVA 1ZVGA 5AQSA 3KOZA 5AQPA 5AQZA 4KYPA 5BPMA 1HPMA 1DQ7A 1ZYWA 3KC6A 3AY9A 5AQLA 3CQXA 3GKUA 5F0XA 1L4VA 1NRAA 1PE4A 1NGIA 3I33A 2G2KA 3KOXA 5AQNA 5F2RA 2ATBA 3FZLA 5BN9A 2V7ZA 3L6QA 5AQKA 2YILA 2NY9X 2N2QA 3LDQA 5AQFA 4AEIA 3KP0A 1PX9A 4H5VA 1I2UA 3QFUA 3KOYA 1POIA 4H5NA 5AQRA 3A8YA 3QMLA 4CQKA 1T1TA 2N69A 2LY6A 3FZFA 5AQXA 1B3CA 1AHOA 5F1XA 2M8BB 1WT7A 2ASCA 4H5RA 2B68A 1KAXA 2N66A 3FZMA 1JZBA 2QWPA 2QXLA 2YC1C 5AQUA 5CY0A 2VY6A 1WMTA 1ZUTA 5AQTA 1C56A 4H5TA 1AYJA 5AR0A 2NY8X 1ZVEA 3D2EB 2BUPA 2E3FA 3BK3C 5AQQA 3E7RL 4AB0A 5EXWA 2LKBA 5AQJA 1ZU3A 4AAZA 1BUPA 1NGGA 3E7UX 4UADE 5FPNA 5FPEA 3CW4A 4FL9A 2LI7A 2KJAA 2KBHA 1BMRA 2SN3A 1K8BA 2N2RA 1JZAA 2KBJA 1GPTA 2LN8A
chains in the Genus database with same CATH topology
3LDNA 2QWLA 5AQMA 2K35A 3C7NA 5BN8A 4HWIA 5EX5A 2E8AA 5AQWA 2QW9A 3FZKA 2KHOA 3GL1A 3QI7A 2YIPA 4IO8A 5FPDA 2QWMA 5AQYA 1NGEA 3D2FB 3JXUA 2E88A 1NGCA 3R2VA 2GMOA 3LDOA 3LDPA 5AQGA 1NGAA 3HSCA 3D2EA 2MN5A 5EY4A 1HJOA 3ATVA 1NGJA 3KHWA 1BA1A 2MBKA 1QQMA 2D56A 3FE1A 3SF4D 1ATSA 1QQNA 3IUCA 1NGFA 3M3ZA 1NGHA 3L4IA 3KVGA 1NGDA 2QWNA 2QWOA 3ATUA 5AQOA 2QWRA 2JDQD 5BPLA 5AQHA 1S3XA 4H5WA 3LDLA 4UAFE 1YUWA 3C7NB 4KBOA 1BA0A 5BPNA 3D2FA 3FZHA 3QFPA 3L56A 5AQVA 1ATRA 4GNIA 1HX1A 2QWQA 4UAEF 2YIOA 1QQOA 1KAZA 1DKGD 5AQIA 3GDQA 1KAYA 5FPMA 5EVZA 2E2FA 1NGBA 4FSVA 5AQSA 5AQPA 5AQZA 5BPMA 1HPMA 3KC6A 3AY9A 5AQLA 3CQXA 5F0XA 5F2RA 1NGIA 3I33A 5AQNA 3FZLA 5BN9A 2V7ZA 3L6QA 5AQKA 2YILA 3LDQA 5AQFA 4H5VA 3QFUA 4H5NA 1POIA 5AQRA 3A8YA 3QMLA 3FZFA 5AQXA 5F1XA 4H5RA 1KAXA 3FZMA 2QWPA 2QXLA 5AQUA 2VY6A 5AQTA 4H5TA 5AR0A 3D2EB 2BUPA 3BK3C 5AQQA 5EXWA 5AQJA 1BUPA 1NGGA 4UADE 5FPNA 5FPEA 3CW4A 4FL9A 2LN8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BK3 C;  2MBK A; 
#chains in the Genus database with same CATH topology
 1UGL A;  4HHF A;  3LDN A;  2QWL A;  5AQM A;  1N4N A;  2K35 A;  2LT8 A;  3C7N A;  5BN8 A;  2KGQ A;  4HWI A;  5EX5 A;  5KK4 A;  2E8A A;  5AQW A;  2YEO A;  4V1D C;  1XRS B;  1C55 A;  2QW9 A;  3FZK A;  2KHO A;  3GL1 A;  1P0A A;  3QI7 A;  2YIP A;  4IO8 A;  4UJ0 A;  5FPD A;  1WWN A;  2QWM A;  5AQY A;  1NGE A;  1T7A A;  2KBK A;  3D2F B;  3JXU A;  1ZYV A;  2E88 A;  1NGC A;  1OMY A;  1BCG A;  1LQQ A;  3R2V A;  1P00 A;  1SN4 A;  1SN1 A;  3KP1 A;  2GMO A;  1FH3 A;  1B7D A;  1NH5 A;  3LDO A;  3LDP A;  3KOW A;  5AQG A;  2KPY A;  1NGA A;  3HSC A;  3D2E A;  2MN5 A;  1VNA A;  2E0H A;  5EY4 A;  1HJO A;  3ATV A;  1NGJ A;  1NRB A;  1SNB A;  3KHW A;  2LJM A;  1CHZ A;  1BA1 A;  2MBK A;  2LJ7 A;  1QQM A;  2LY5 A;  1T7E A;  2E3G A;  2D56 A;  3FE1 A;  3SF4 D;  1I2V A;  1ATS A;  1MR4 A;  1QQN A;  1VNB A;  3IUC A;  1CN2 A;  1NGF A;  3M3Z A;  1NGH A;  2KYQ A;  3L4I A;  2I61 A;  3KVG A;  1NGD A;  2QWN A;  2QWO A;  3ATU A;  1BK8 A;  1KV0 A;  5AQO A;  1NPI A;  2GL1 A;  1T0Z A;  2JDQ D;  2QWR A;  2YBR C;  1SEG A;  5BPL A;  1ICA A;  5AQH A;  1DJT A;  1S3X A;  1JXC A;  1ZFU A;  3LDL A;  4H5W A;  1LQI A;  4UAF E;  1YUW A;  2BRZ A;  3C7N B;  2B3C A;  4KBO A;  1BA0 A;  1TI5 A;  5BPN A;  1OZZ A;  3D2F A;  3FZH A;  1GPS A;  3QFP A;  3L56 A;  5AQV A;  1ATR A;  1LQH A;  1MYN A;  4GNI A;  1HX1 A;  1PTX A;  2QWQ A;  4UAE F;  2YIO A;  2A7T A;  1QQO A;  1T7B A;  1NE5 A;  1KAZ A;  1I6F A;  2LR3 A;  1DKG D;  5AQI A;  3GDQ A;  3PSM A;  1KAY A;  5FPM A;  1JKZ A;  5EVZ A;  1I6G A;  2MZ0 A;  4HE7 A;  1BRZ A;  2KSK A;  2E2F A;  1NGB A;  4FSV A;  1ZVG A;  5AQS A;  3KOZ A;  5AQP A;  5AQZ A;  4KYP A;  5BPM A;  1HPM A;  1DQ7 A;  1ZYW A;  3KC6 A;  3AY9 A;  5AQL A;  3CQX A;  3GKU A;  5F0X A;  1L4V A;  1NRA A;  1PE4 A;  1NGI A;  3I33 A;  2G2K A;  3KOX A;  5AQN A;  5F2R A;  2ATB A;  3FZL A;  5BN9 A;  2V7Z A;  3L6Q A;  5AQK A;  2YIL A;  2NY9 X;  2N2Q A;  3LDQ A;  5AQF A;  4AEI A;  3KP0 A;  1PX9 A;  4H5V A;  1I2U A;  3QFU A;  3KOY A;  1POI A;  4H5N A;  5AQR A;  3A8Y A;  3QML A;  4CQK A;  1T1T A;  2N69 A;  2LY6 A;  3FZF A;  5AQX A;  1B3C A;  1AHO A;  5F1X A;  2M8B B;  1WT7 A;  2ASC A;  4H5R A;  2B68 A;  1KAX A;  2N66 A;  3FZM A;  1JZB A;  2QWP A;  2QXL A;  2YC1 C;  5AQU A;  5CY0 A;  2VY6 A;  1WMT A;  1ZUT A;  5AQT A;  1C56 A;  4H5T A;  1AYJ A;  5AR0 A;  2NY8 X;  1ZVE A;  3D2E B;  2BUP A;  2E3F A;  3BK3 C;  5AQQ A;  3E7R L;  4AB0 A;  5EXW A;  2LKB A;  5AQJ A;  1ZU3 A;  4AAZ A;  1BUP A;  1NGG A;  3E7U X;  4UAD E;  5FPN A;  5FPE A;  3CW4 A;  4FL9 A;  2LI7 A;  2KJA A;  2KBH A;  1BMR A;  2SN3 A;  1K8B A;  2N2R A;  1JZA A;  2KBJ A;  1GPT A;  2LN8 A; 
#chains in the Genus database with same CATH homology
 3LDN A;  2QWL A;  5AQM A;  2K35 A;  3C7N A;  5BN8 A;  4HWI A;  5EX5 A;  2E8A A;  5AQW A;  2QW9 A;  3FZK A;  2KHO A;  3GL1 A;  3QI7 A;  2YIP A;  4IO8 A;  5FPD A;  2QWM A;  5AQY A;  1NGE A;  3D2F B;  3JXU A;  2E88 A;  1NGC A;  3R2V A;  2GMO A;  3LDO A;  3LDP A;  5AQG A;  1NGA A;  3HSC A;  3D2E A;  2MN5 A;  5EY4 A;  1HJO A;  3ATV A;  1NGJ A;  3KHW A;  1BA1 A;  2MBK A;  1QQM A;  2D56 A;  3FE1 A;  3SF4 D;  1ATS A;  1QQN A;  3IUC A;  1NGF A;  3M3Z A;  1NGH A;  3L4I A;  3KVG A;  1NGD A;  2QWN A;  2QWO A;  3ATU A;  5AQO A;  2QWR A;  2JDQ D;  5BPL A;  5AQH A;  1S3X A;  4H5W A;  3LDL A;  4UAF E;  1YUW A;  3C7N B;  4KBO A;  1BA0 A;  5BPN A;  3D2F A;  3FZH A;  3QFP A;  3L56 A;  5AQV A;  1ATR A;  4GNI A;  1HX1 A;  2QWQ A;  4UAE F;  2YIO A;  1QQO A;  1KAZ A;  1DKG D;  5AQI A;  3GDQ A;  1KAY A;  5FPM A;  5EVZ A;  2E2F A;  1NGB A;  4FSV A;  5AQS A;  5AQP A;  5AQZ A;  5BPM A;  1HPM A;  3KC6 A;  3AY9 A;  5AQL A;  3CQX A;  5F0X A;  5F2R A;  1NGI A;  3I33 A;  5AQN A;  3FZL A;  5BN9 A;  2V7Z A;  3L6Q A;  5AQK A;  2YIL A;  3LDQ A;  5AQF A;  4H5V A;  3QFU A;  4H5N A;  1POI A;  5AQR A;  3A8Y A;  3QML A;  3FZF A;  5AQX A;  5F1X A;  4H5R A;  1KAX A;  3FZM A;  2QWP A;  2QXL A;  5AQU A;  2VY6 A;  5AQT A;  4H5T A;  5AR0 A;  3D2E B;  2BUP A;  3BK3 C;  5AQQ A;  5EXW A;  5AQJ A;  1BUP A;  1NGG A;  4UAD E;  5FPN A;  5FPE A;  3CW4 A;  4FL9 A;  2LN8 A; 
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