2MZ0A

Solution nmr structure of pdfl2.1 from arabidopsis thaliana
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
55
structure length
55
Chain Sequence
KDIDGRKPLLIGTCIEFPTEKCNKTCIESNFAGGKCVHIGQSLDFVCVCFPKYYI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution NMR Structure of PDFL2.1 from Arabidopsis thaliana
rcsb
molecule tags Antimicrobial protein
source organism Arabidopsis thaliana
molecule keywords Defensin-like protein 32
total genus 8
structure length 55
sequence length 55
ec nomenclature
pdb deposition date 2015-02-05
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 2mz0A00
1B3CA 1ZVGA 1NRBA 1I2UA 1JKZA 2KGQA 2N69A 1L4VA 1MR4A 2LKBA 1SN1A 4AAZA 1TI5A 2GL1A 1T7EA 3E7UX 2B68A 1BMRA 1I6GA 1P00A 2N2RA 5CY0A 1LQQA 2LR3A 1C55A 1AYJA 1DQ7A 1B7DA 2E3FA 1OMYA 1WMTA 1LQHA 2KYQA 2E0HA 1CN2A 2KSKA 2LT8A 1BCGA 1NRAA 1ZYWA 1AHOA 2KJAA 1NH5A 2BRZA 1GPSA 1WWNA 2NY9X 2I61A 2KBKA 1JZAA 2NY8X 2YC1C 2YBRC 1KV0A 1T7BA 1CHZA 2LY6A 4AB0A 1MYNA 1T1TA 2N2QA 4HE7A 1T7AA 4CQKA 2KBJA 4HHFA 2KBHA 2M8BB 2SN3A 1ZU3A 1GPTA 2LJ7A 2LJMA 2B3CA 1BK8A 1ZUTA 4V1DC 2N66A 2KPYA 2YEOA 1NE5A 1JXCA 3PSMA 1PE4A 1PX9A 1PTXA 1I2VA 1ICAA 2E3GA 1OZZA 2LY5A 4KYPA 1WT7A 1I6FA 2LI7A 2ATBA 1N4NA 1ZFUA 1LQIA 1SN4A 1VNBA 1VNAA 1SEGA 2ASCA 1ZVEA 5KK4A 4AEIA 4UJ0A 1C56A 1ZYVA 1T0ZA 1DJTA 3E7RL 1FH3A 1BRZA 1NPIA 1P0AA 2A7TA 2MZ0A 1SNBA 1JZBA
chains in the Genus database with same CATH superfamily
3QI7A 1B3CA 3CW4A 3KVGA 1QQMA 3KHWA 1ZVGA 3LDQA 1NRBA 5EXWA 1NGAA 2QWRA 3L6QA 3C7NA 3KP1A 1I2UA 1JKZA 2KGQA 2GMOA 2N69A 1L4VA 1MR4A 3QFUA 3SF4D 5AQVA 3I33A 1KAYA 1SN1A 2LKBA 3KOYA 1NGCA 1QQOA 3BK3C 2JDQD 3KP0A 4AAZA 1TI5A 2GL1A 5F2RA 1K8BA 5FPNA 1NGIA 1T7EA 5BN9A 3E7UX 3ATUA 1KAZA 2B68A 2QWPA 3FZKA 3FZLA 3KOWA 5EVZA 1BMRA 1I6GA 3FZMA 1P00A 2KHOA 4UADE 1HX1A 2N2RA 4HWIA 5CY0A 1NGBA 2YILA 3IUCA 1LQQA 2LR3A 5BPMA 1C55A 1AYJA 1DQ7A 5BN8A 3D2EA 1B7DA 1BA0A 5AQHA 5EY4A 5F1XA 5AQGA 2E3FA 1OMYA 3GDQA 5BPLA 2K35A 2QWLA 5AQLA 1WMTA 5AQMA 5AQYA 1LQHA 2KYQA 5F0XA 2E0HA 2QWMA 1CN2A 1NGFA 5AQFA 3GL1A 2KSKA 2LT8A 4H5VA 4H5WA 1BCGA 1NRAA 1KAXA 1ZYWA 2E2FA 3FE1A 1AHOA 3KC6A 4KBOA 1NGDA 2KJAA 2MBKA 4UAEF 3ATVA 2MN5A 1NH5A 1XRSB 2BRZA 1GPSA 1WWNA 2NY9X 4H5NA 2I61A 2KBKA 1JZAA 2NY8X 2YC1C 2YBRC 3JXUA 4GNIA 1KV0A 1T7BA 2QW9A 1CHZA 3D2FA 2LY6A 3C7NB 4AB0A 1MYNA 1T1TA 2N2QA 1YUWA 4HE7A 2G2KA 1T7AA 4CQKA 5FPDA 2KBJA 2QWQA 2V7ZA 4H5TA 4HHFA 2KBHA 2M8BB 2YIPA 4IO8A 2SN3A 2E8AA 1ZU3A 1GPTA 2LJ7A 2LJMA 2B3CA 2QXLA 3LDNA 4FSVA 1BK8A 1S3XA 1ZUTA 2N66A 3CQXA 4V1DC 3L4IA 5AQXA 2KPYA 2LN8A 5FPMA 5AQSA 2YEOA 1NE5A 1JXCA 3PSMA 3KOXA 5AQQA 3M3ZA 1NGHA 5AQZA 1BA1A 3L56A 5AQIA 5AQKA 3D2EB 1PE4A 1NGEA 1PX9A 4H5RA 1HJOA 1PTXA 1I2VA 1ICAA 3LDOA 1ATSA 2E3GA 1OZZA 2LY5A 4KYPA 2YIOA 1WT7A 1I6FA 5AQRA 1BUPA 2E88A 4UAFE 5AQJA 2BUPA 2LI7A 2ATBA 1N4NA 2QWNA 5AQTA 3QFPA 1ZFUA 3LDLA 1NGJA 1LQIA 5AR0A 1SN4A 1VNBA 1VNAA 3KOZA 5AQUA 3HSCA 5AQNA 1SEGA 2ASCA 1HPMA 5AQOA 1UGLA 3QMLA 1ZVEA 5BPNA 5KK4A 2QWOA 4AEIA 4UJ0A 1C56A 1ZYVA 3FZFA 3R2VA 2VY6A 3D2FB 5EX5A 1T0ZA 1DJTA 2D56A 1QQNA 3E7RL 1FH3A 1BRZA 1DKGD 1NPIA 5AQPA 1P0AA 3FZHA 5AQWA 1ATRA 4FL9A 2A7TA 3AY9A 5FPEA 1NGGA 2MZ0A 3A8YA 3LDPA 3GKUA 1SNBA 1POIA 1JZBA
chains in the Genus database with same CATH topology
1B3CA 1ZVGA 1NRBA 1I2UA 1JKZA 2KGQA 2N69A 1L4VA 1MR4A 2LKBA 1SN1A 4AAZA 1TI5A 2GL1A 1T7EA 3E7UX 2B68A 1BMRA 1I6GA 1P00A 2N2RA 5CY0A 1LQQA 2LR3A 1C55A 1AYJA 1DQ7A 1B7DA 2E3FA 1OMYA 1WMTA 1LQHA 2KYQA 2E0HA 1CN2A 2KSKA 2LT8A 1BCGA 1NRAA 1ZYWA 1AHOA 2KJAA 1NH5A 2BRZA 1GPSA 1WWNA 2NY9X 2I61A 2KBKA 1JZAA 2NY8X 2YC1C 2YBRC 1KV0A 1T7BA 1CHZA 2LY6A 4AB0A 1MYNA 1T1TA 2N2QA 4HE7A 1T7AA 4CQKA 2KBJA 4HHFA 2KBHA 2M8BB 2SN3A 1ZU3A 1GPTA 2LJ7A 2LJMA 2B3CA 1BK8A 1ZUTA 4V1DC 2N66A 2KPYA 2YEOA 1NE5A 1JXCA 3PSMA 1PE4A 1PX9A 1PTXA 1I2VA 1ICAA 2E3GA 1OZZA 2LY5A 4KYPA 1WT7A 1I6FA 2LI7A 2ATBA 1N4NA 1ZFUA 1LQIA 1SN4A 1VNBA 1VNAA 1SEGA 2ASCA 1ZVEA 5KK4A 4AEIA 4UJ0A 1C56A 1ZYVA 1T0ZA 1DJTA 3E7RL 1FH3A 1BRZA 1NPIA 1P0AA 2A7TA 2MZ0A 1SNBA 1JZBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1B3C A;  1ZVG A;  1NRB A;  1I2U A;  1JKZ A;  2KGQ A;  2N69 A;  1L4V A;  1MR4 A;  2LKB A;  1SN1 A;  4AAZ A;  1TI5 A;  2GL1 A;  1T7E A;  3E7U X;  2B68 A;  1BMR A;  1I6G A;  1P00 A;  2N2R A;  5CY0 A;  1LQQ A;  2LR3 A;  1C55 A;  1AYJ A;  1DQ7 A;  1B7D A;  2E3F A;  1OMY A;  1WMT A;  1LQH A;  2KYQ A;  2E0H A;  1CN2 A;  2KSK A;  2LT8 A;  1BCG A;  1NRA A;  1ZYW A;  1AHO A;  2KJA A;  1NH5 A;  2BRZ A;  1GPS A;  1WWN A;  2NY9 X;  2I61 A;  2KBK A;  1JZA A;  2NY8 X;  2YC1 C;  2YBR C;  1KV0 A;  1T7B A;  1CHZ A;  2LY6 A;  4AB0 A;  1MYN A;  1T1T A;  2N2Q A;  4HE7 A;  1T7A A;  4CQK A;  2KBJ A;  4HHF A;  2KBH A;  2M8B B;  2SN3 A;  1ZU3 A;  1GPT A;  2LJ7 A;  2LJM A;  2B3C A;  1BK8 A;  1ZUT A;  4V1D C;  2N66 A;  2KPY A;  2YEO A;  1NE5 A;  1JXC A;  3PSM A;  1PE4 A;  1PX9 A;  1PTX A;  1I2V A;  1ICA A;  2E3G A;  1OZZ A;  2LY5 A;  4KYP A;  1WT7 A;  1I6F A;  2LI7 A;  2ATB A;  1N4N A;  1ZFU A;  1LQI A;  1SN4 A;  1VNB A;  1VNA A;  1SEG A;  2ASC A;  1ZVE A;  5KK4 A;  4AEI A;  4UJ0 A;  1C56 A;  1ZYV A;  1T0Z A;  1DJT A;  3E7R L;  1FH3 A;  1BRZ A;  1NPI A;  1P0A A;  2A7T A;  2MZ0 A;  1SNB A;  1JZB A; 
#chains in the Genus database with same CATH topology
 3QI7 A;  1B3C A;  3CW4 A;  3KVG A;  1QQM A;  3KHW A;  1ZVG A;  3LDQ A;  1NRB A;  5EXW A;  1NGA A;  2QWR A;  3L6Q A;  3C7N A;  3KP1 A;  1I2U A;  1JKZ A;  2KGQ A;  2GMO A;  2N69 A;  1L4V A;  1MR4 A;  3QFU A;  3SF4 D;  5AQV A;  3I33 A;  1KAY A;  1SN1 A;  2LKB A;  3KOY A;  1NGC A;  1QQO A;  3BK3 C;  2JDQ D;  3KP0 A;  4AAZ A;  1TI5 A;  2GL1 A;  5F2R A;  1K8B A;  5FPN A;  1NGI A;  1T7E A;  5BN9 A;  3E7U X;  3ATU A;  1KAZ A;  2B68 A;  2QWP A;  3FZK A;  3FZL A;  3KOW A;  5EVZ A;  1BMR A;  1I6G A;  3FZM A;  1P00 A;  2KHO A;  4UAD E;  1HX1 A;  2N2R A;  4HWI A;  5CY0 A;  1NGB A;  2YIL A;  3IUC A;  1LQQ A;  2LR3 A;  5BPM A;  1C55 A;  1AYJ A;  1DQ7 A;  5BN8 A;  3D2E A;  1B7D A;  1BA0 A;  5AQH A;  5EY4 A;  5F1X A;  5AQG A;  2E3F A;  1OMY A;  3GDQ A;  5BPL A;  2K35 A;  2QWL A;  5AQL A;  1WMT A;  5AQM A;  5AQY A;  1LQH A;  2KYQ A;  5F0X A;  2E0H A;  2QWM A;  1CN2 A;  1NGF A;  5AQF A;  3GL1 A;  2KSK A;  2LT8 A;  4H5V A;  4H5W A;  1BCG A;  1NRA A;  1KAX A;  1ZYW A;  2E2F A;  3FE1 A;  1AHO A;  3KC6 A;  4KBO A;  1NGD A;  2KJA A;  2MBK A;  4UAE F;  3ATV A;  2MN5 A;  1NH5 A;  1XRS B;  2BRZ A;  1GPS A;  1WWN A;  2NY9 X;  4H5N A;  2I61 A;  2KBK A;  1JZA A;  2NY8 X;  2YC1 C;  2YBR C;  3JXU A;  4GNI A;  1KV0 A;  1T7B A;  2QW9 A;  1CHZ A;  3D2F A;  2LY6 A;  3C7N B;  4AB0 A;  1MYN A;  1T1T A;  2N2Q A;  1YUW A;  4HE7 A;  2G2K A;  1T7A A;  4CQK A;  5FPD A;  2KBJ A;  2QWQ A;  2V7Z A;  4H5T A;  4HHF A;  2KBH A;  2M8B B;  2YIP A;  4IO8 A;  2SN3 A;  2E8A A;  1ZU3 A;  1GPT A;  2LJ7 A;  2LJM A;  2B3C A;  2QXL A;  3LDN A;  4FSV A;  1BK8 A;  1S3X A;  1ZUT A;  2N66 A;  3CQX A;  4V1D C;  3L4I A;  5AQX A;  2KPY A;  2LN8 A;  5FPM A;  5AQS A;  2YEO A;  1NE5 A;  1JXC A;  3PSM A;  3KOX A;  5AQQ A;  3M3Z A;  1NGH A;  5AQZ A;  1BA1 A;  3L56 A;  5AQI A;  5AQK A;  3D2E B;  1PE4 A;  1NGE A;  1PX9 A;  4H5R A;  1HJO A;  1PTX A;  1I2V A;  1ICA A;  3LDO A;  1ATS A;  2E3G A;  1OZZ A;  2LY5 A;  4KYP A;  2YIO A;  1WT7 A;  1I6F A;  5AQR A;  1BUP A;  2E88 A;  4UAF E;  5AQJ A;  2BUP A;  2LI7 A;  2ATB A;  1N4N A;  2QWN A;  5AQT A;  3QFP A;  1ZFU A;  3LDL A;  1NGJ A;  1LQI A;  5AR0 A;  1SN4 A;  1VNB A;  1VNA A;  3KOZ A;  5AQU A;  3HSC A;  5AQN A;  1SEG A;  2ASC A;  1HPM A;  5AQO A;  1UGL A;  3QML A;  1ZVE A;  5BPN A;  5KK4 A;  2QWO A;  4AEI A;  4UJ0 A;  1C56 A;  1ZYV A;  3FZF A;  3R2V A;  2VY6 A;  3D2F B;  5EX5 A;  1T0Z A;  1DJT A;  2D56 A;  1QQN A;  3E7R L;  1FH3 A;  1BRZ A;  1DKG D;  1NPI A;  5AQP A;  1P0A A;  3FZH A;  5AQW A;  1ATR A;  4FL9 A;  2A7T A;  3AY9 A;  5FPE A;  1NGG A;  2MZ0 A;  3A8Y A;  3LDP A;  3GKU A;  1SNB A;  1POI A;  1JZB A; 
#chains in the Genus database with same CATH homology
 1B3C A;  1ZVG A;  1NRB A;  1I2U A;  1JKZ A;  2KGQ A;  2N69 A;  1L4V A;  1MR4 A;  2LKB A;  1SN1 A;  4AAZ A;  1TI5 A;  2GL1 A;  1T7E A;  3E7U X;  2B68 A;  1BMR A;  1I6G A;  1P00 A;  2N2R A;  5CY0 A;  1LQQ A;  2LR3 A;  1C55 A;  1AYJ A;  1DQ7 A;  1B7D A;  2E3F A;  1OMY A;  1WMT A;  1LQH A;  2KYQ A;  2E0H A;  1CN2 A;  2KSK A;  2LT8 A;  1BCG A;  1NRA A;  1ZYW A;  1AHO A;  2KJA A;  1NH5 A;  2BRZ A;  1GPS A;  1WWN A;  2NY9 X;  2I61 A;  2KBK A;  1JZA A;  2NY8 X;  2YC1 C;  2YBR C;  1KV0 A;  1T7B A;  1CHZ A;  2LY6 A;  4AB0 A;  1MYN A;  1T1T A;  2N2Q A;  4HE7 A;  1T7A A;  4CQK A;  2KBJ A;  4HHF A;  2KBH A;  2M8B B;  2SN3 A;  1ZU3 A;  1GPT A;  2LJ7 A;  2LJM A;  2B3C A;  1BK8 A;  1ZUT A;  4V1D C;  2N66 A;  2KPY A;  2YEO A;  1NE5 A;  1JXC A;  3PSM A;  1PE4 A;  1PX9 A;  1PTX A;  1I2V A;  1ICA A;  2E3G A;  1OZZ A;  2LY5 A;  4KYP A;  1WT7 A;  1I6F A;  2LI7 A;  2ATB A;  1N4N A;  1ZFU A;  1LQI A;  1SN4 A;  1VNB A;  1VNA A;  1SEG A;  2ASC A;  1ZVE A;  5KK4 A;  4AEI A;  4UJ0 A;  1C56 A;  1ZYV A;  1T0Z A;  1DJT A;  3E7R L;  1FH3 A;  1BRZ A;  1NPI A;  1P0A A;  2A7T A;  2MZ0 A;  1SNB A;  1JZB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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