2N2RA

Nmr solution structure of rsafp2
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
51
structure length
51
Chain Sequence
QKLCQRPSGTWSGVCGNNNACKNQCIRLEKARHGSCNYVFPAHKCICYFPC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The radish defensins RsAFP1 and RsAFP2 act synergistically with caspofungin against Candida albicans biofilms.
pubmed doi rcsb
molecule tags Antifungal protein
source organism Raphanus sativus
molecule keywords Defensin-like protein 2
total genus 11
structure length 51
sequence length 51
ec nomenclature
pdb deposition date 2015-05-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00304 Gamma-thionin Gamma-thionin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 2n2rA00
1I6FA 1MYNA 2M8BB 1ZFUA 1ZU3A 1ZVGA 2ATBA 1NPIA 2GL1A 2NY9X 4CQKA 2MZ0A 2LJ7A 1DJTA 2YC1C 2LY5A 2KSKA 1P00A 2ASCA 3PSMA 1T0ZA 1WT7A 1BRZA 1T7AA 1T7EA 2N66A 1SEGA 2NY8X 1PX9A 2KYQA 2KPYA 1NE5A 4V1DC 1JKZA 2LT8A 2N2RA 1OMYA 1PE4A 5CY0A 1JXCA 2LKBA 4KYPA 1MR4A 2B68A 1ZVEA 2I61A 1AHOA 1C55A 1L4VA 1BCGA 3E7UX 2KBJA 2A7TA 2N69A 1ZYVA 1T7BA 1T1TA 4AAZA 1I6GA 1FH3A 1BMRA 4AEIA 1GPTA 1NH5A 1LQIA 1NRAA 1TI5A 1LQHA 1SN4A 1VNBA 1WMTA 2YBRC 2BRZA 1B3CA 2KBKA 2KBHA 1NRBA 1I2VA 1GPSA 1ZYWA 4AB0A 1AYJA 1PTXA 2KJAA 2E0HA 1JZBA 1CHZA 2YEOA 1BK8A 2E3FA 4HE7A 1CN2A 1WWNA 1SNBA 5KK4A 1I2UA 2B3CA 1P0AA 2LJMA 1SN1A 1LQQA 2LR3A 4HHFA 1C56A 3E7RL 2LI7A 2LY6A 1OZZA 1N4NA 1ZUTA 1ICAA 2KGQA 1JZAA 2E3GA 1DQ7A 2SN3A 2N2QA 1KV0A 1VNAA 4UJ0A 1B7DA
chains in the Genus database with same CATH superfamily
1I6FA 1MYNA 2M8BB 3LDPA 1ZFUA 1ZU3A 3CQXA 1ZVGA 2ATBA 1NPIA 2GL1A 2NY9X 3FZFA 4HWIA 5AR0A 3SF4D 4CQKA 2MZ0A 2LJ7A 1DJTA 2YC1C 4KBOA 2QWRA 4GNIA 2LY5A 2KSKA 2E88A 3A8YA 1P00A 2ASCA 2QWQA 3ATVA 2KHOA 3PSMA 1T0ZA 1NGIA 5F0XA 2LN8A 2K35A 5AQLA 5EVZA 1WT7A 2QWPA 1BRZA 1NGFA 3FZHA 1T7AA 1T7EA 2D56A 2N66A 3KOXA 1SEGA 1HX1A 2QWLA 2NY8X 2YIOA 3AY9A 1PX9A 2MBKA 4FL9A 4H5VA 2KYQA 2KPYA 5AQGA 5BPLA 5AQZA 1NE5A 1QQNA 1NGCA 3L4IA 4FSVA 4V1DC 1JKZA 3FZMA 5EY4A 4UADE 3IUCA 5AQQA 2VY6A 1KAZA 1HPMA 2LT8A 2N2RA 5AQKA 4H5NA 3LDQA 3KOWA 2QXLA 5AQXA 1OMYA 1PE4A 5CY0A 1BA0A 1JXCA 2E2FA 2LKBA 2QWMA 3LDOA 4H5WA 4KYPA 5F2RA 5FPEA 3KHWA 3QI7A 1MR4A 5AQIA 1KAYA 5BN9A 1UGLA 5F1XA 2B68A 1K8BA 1ZVEA 5AQMA 2I61A 1AHOA 1C55A 1L4VA 2V7ZA 1NGDA 1BCGA 1ATRA 3E7UX 2KBJA 5AQWA 5AQYA 2A7TA 5AQFA 3QMLA 2N69A 1ZYVA 2YILA 1T7BA 4H5RA 1T1TA 4AAZA 1I6GA 1S3XA 3L6QA 1FH3A 3KOZA 1BMRA 4IO8A 4UAFE 3KVGA 4AEIA 3GDQA 1GPTA 1NH5A 2QWOA 1LQIA 1NRAA 3M3ZA 5AQNA 3D2EA 3LDNA 1TI5A 1LQHA 3D2EB 5FPDA 1SN4A 1VNBA 1WMTA 2YBRC 2YIPA 5BN8A 2BRZA 2E8AA 1B3CA 2KBKA 2KBHA 1NRBA 5BPMA 1I2VA 1GPSA 1DKGD 1ZYWA 1NGEA 3BK3C 4AB0A 1AYJA 1PTXA 5AQVA 2KJAA 2E0HA 1BUPA 4H5TA 3L56A 1BA1A 2JDQD 1JZBA 3FE1A 1CHZA 2YEOA 3KOYA 5EXWA 2E3FA 1BK8A 3FZKA 1QQMA 4HE7A 5AQJA 1NGJA 1CN2A 5AQOA 1WWNA 3C7NA 5AQHA 1HJOA 3C7NB 1SNBA 2GMOA 5BPNA 5KK4A 1I2UA 5FPNA 2B3CA 1P0AA 5AQRA 2LJMA 1SN1A 3KP1A 5AQSA 1LQQA 5AQTA 2LR3A 4HHFA 1NGAA 1C56A 3CW4A 3E7RL 1XRSB 2LI7A 2LY6A 1NGHA 3ATUA 1NGBA 3FZLA 1ATSA 1OZZA 3QFUA 1POIA 5AQUA 2QWNA 2MN5A 1KAXA 2QW9A 5EX5A 1N4NA 3HSCA 1ZUTA 3LDLA 1ICAA 2KGQA 1JZAA 2BUPA 2E3GA 3D2FA 3D2FB 3R2VA 4UAEF 5FPMA 1DQ7A 5AQPA 2SN3A 2N2QA 1KV0A 1YUWA 1VNAA 3GKUA 3I33A 3KP0A 4UJ0A 1NGGA 1B7DA 3JXUA 3QFPA 3KC6A 1QQOA 3GL1A 2G2KA
chains in the Genus database with same CATH topology
1I6FA 1MYNA 2M8BB 1ZFUA 1ZU3A 1ZVGA 2ATBA 1NPIA 2GL1A 2NY9X 4CQKA 2MZ0A 2LJ7A 1DJTA 2YC1C 2LY5A 2KSKA 1P00A 2ASCA 3PSMA 1T0ZA 1WT7A 1BRZA 1T7AA 1T7EA 2N66A 1SEGA 2NY8X 1PX9A 2KYQA 2KPYA 1NE5A 4V1DC 1JKZA 2LT8A 2N2RA 1OMYA 1PE4A 5CY0A 1JXCA 2LKBA 4KYPA 1MR4A 2B68A 1ZVEA 2I61A 1AHOA 1C55A 1L4VA 1BCGA 3E7UX 2KBJA 2A7TA 2N69A 1ZYVA 1T7BA 1T1TA 4AAZA 1I6GA 1FH3A 1BMRA 4AEIA 1GPTA 1NH5A 1LQIA 1NRAA 1TI5A 1LQHA 1SN4A 1VNBA 1WMTA 2YBRC 2BRZA 1B3CA 2KBKA 2KBHA 1NRBA 1I2VA 1GPSA 1ZYWA 4AB0A 1AYJA 1PTXA 2KJAA 2E0HA 1JZBA 1CHZA 2YEOA 1BK8A 2E3FA 4HE7A 1CN2A 1WWNA 1SNBA 5KK4A 1I2UA 2B3CA 1P0AA 2LJMA 1SN1A 1LQQA 2LR3A 4HHFA 1C56A 3E7RL 2LI7A 2LY6A 1OZZA 1N4NA 1ZUTA 1ICAA 2KGQA 1JZAA 2E3GA 1DQ7A 2SN3A 2N2QA 1KV0A 1VNAA 4UJ0A 1B7DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1I6F A;  1MYN A;  2M8B B;  1ZFU A;  1ZU3 A;  1ZVG A;  2ATB A;  1NPI A;  2GL1 A;  2NY9 X;  4CQK A;  2MZ0 A;  2LJ7 A;  1DJT A;  2YC1 C;  2LY5 A;  2KSK A;  1P00 A;  2ASC A;  3PSM A;  1T0Z A;  1WT7 A;  1BRZ A;  1T7A A;  1T7E A;  2N66 A;  1SEG A;  2NY8 X;  1PX9 A;  2KYQ A;  2KPY A;  1NE5 A;  4V1D C;  1JKZ A;  2LT8 A;  2N2R A;  1OMY A;  1PE4 A;  5CY0 A;  1JXC A;  2LKB A;  4KYP A;  1MR4 A;  2B68 A;  1ZVE A;  2I61 A;  1AHO A;  1C55 A;  1L4V A;  1BCG A;  3E7U X;  2KBJ A;  2A7T A;  2N69 A;  1ZYV A;  1T7B A;  1T1T A;  4AAZ A;  1I6G A;  1FH3 A;  1BMR A;  4AEI A;  1GPT A;  1NH5 A;  1LQI A;  1NRA A;  1TI5 A;  1LQH A;  1SN4 A;  1VNB A;  1WMT A;  2YBR C;  2BRZ A;  1B3C A;  2KBK A;  2KBH A;  1NRB A;  1I2V A;  1GPS A;  1ZYW A;  4AB0 A;  1AYJ A;  1PTX A;  2KJA A;  2E0H A;  1JZB A;  1CHZ A;  2YEO A;  1BK8 A;  2E3F A;  4HE7 A;  1CN2 A;  1WWN A;  1SNB A;  5KK4 A;  1I2U A;  2B3C A;  1P0A A;  2LJM A;  1SN1 A;  1LQQ A;  2LR3 A;  4HHF A;  1C56 A;  3E7R L;  2LI7 A;  2LY6 A;  1OZZ A;  1N4N A;  1ZUT A;  1ICA A;  2KGQ A;  1JZA A;  2E3G A;  1DQ7 A;  2SN3 A;  2N2Q A;  1KV0 A;  1VNA A;  4UJ0 A;  1B7D A; 
#chains in the Genus database with same CATH topology
 1I6F A;  1MYN A;  2M8B B;  3LDP A;  1ZFU A;  1ZU3 A;  3CQX A;  1ZVG A;  2ATB A;  1NPI A;  2GL1 A;  2NY9 X;  3FZF A;  4HWI A;  5AR0 A;  3SF4 D;  4CQK A;  2MZ0 A;  2LJ7 A;  1DJT A;  2YC1 C;  4KBO A;  2QWR A;  4GNI A;  2LY5 A;  2KSK A;  2E88 A;  3A8Y A;  1P00 A;  2ASC A;  2QWQ A;  3ATV A;  2KHO A;  3PSM A;  1T0Z A;  1NGI A;  5F0X A;  2LN8 A;  2K35 A;  5AQL A;  5EVZ A;  1WT7 A;  2QWP A;  1BRZ A;  1NGF A;  3FZH A;  1T7A A;  1T7E A;  2D56 A;  2N66 A;  3KOX A;  1SEG A;  1HX1 A;  2QWL A;  2NY8 X;  2YIO A;  3AY9 A;  1PX9 A;  2MBK A;  4FL9 A;  4H5V A;  2KYQ A;  2KPY A;  5AQG A;  5BPL A;  5AQZ A;  1NE5 A;  1QQN A;  1NGC A;  3L4I A;  4FSV A;  4V1D C;  1JKZ A;  3FZM A;  5EY4 A;  4UAD E;  3IUC A;  5AQQ A;  2VY6 A;  1KAZ A;  1HPM A;  2LT8 A;  2N2R A;  5AQK A;  4H5N A;  3LDQ A;  3KOW A;  2QXL A;  5AQX A;  1OMY A;  1PE4 A;  5CY0 A;  1BA0 A;  1JXC A;  2E2F A;  2LKB A;  2QWM A;  3LDO A;  4H5W A;  4KYP A;  5F2R A;  5FPE A;  3KHW A;  3QI7 A;  1MR4 A;  5AQI A;  1KAY A;  5BN9 A;  1UGL A;  5F1X A;  2B68 A;  1K8B A;  1ZVE A;  5AQM A;  2I61 A;  1AHO A;  1C55 A;  1L4V A;  2V7Z A;  1NGD A;  1BCG A;  1ATR A;  3E7U X;  2KBJ A;  5AQW A;  5AQY A;  2A7T A;  5AQF A;  3QML A;  2N69 A;  1ZYV A;  2YIL A;  1T7B A;  4H5R A;  1T1T A;  4AAZ A;  1I6G A;  1S3X A;  3L6Q A;  1FH3 A;  3KOZ A;  1BMR A;  4IO8 A;  4UAF E;  3KVG A;  4AEI A;  3GDQ A;  1GPT A;  1NH5 A;  2QWO A;  1LQI A;  1NRA A;  3M3Z A;  5AQN A;  3D2E A;  3LDN A;  1TI5 A;  1LQH A;  3D2E B;  5FPD A;  1SN4 A;  1VNB A;  1WMT A;  2YBR C;  2YIP A;  5BN8 A;  2BRZ A;  2E8A A;  1B3C A;  2KBK A;  2KBH A;  1NRB A;  5BPM A;  1I2V A;  1GPS A;  1DKG D;  1ZYW A;  1NGE A;  3BK3 C;  4AB0 A;  1AYJ A;  1PTX A;  5AQV A;  2KJA A;  2E0H A;  1BUP A;  4H5T A;  3L56 A;  1BA1 A;  2JDQ D;  1JZB A;  3FE1 A;  1CHZ A;  2YEO A;  3KOY A;  5EXW A;  2E3F A;  1BK8 A;  3FZK A;  1QQM A;  4HE7 A;  5AQJ A;  1NGJ A;  1CN2 A;  5AQO A;  1WWN A;  3C7N A;  5AQH A;  1HJO A;  3C7N B;  1SNB A;  2GMO A;  5BPN A;  5KK4 A;  1I2U A;  5FPN A;  2B3C A;  1P0A A;  5AQR A;  2LJM A;  1SN1 A;  3KP1 A;  5AQS A;  1LQQ A;  5AQT A;  2LR3 A;  4HHF A;  1NGA A;  1C56 A;  3CW4 A;  3E7R L;  1XRS B;  2LI7 A;  2LY6 A;  1NGH A;  3ATU A;  1NGB A;  3FZL A;  1ATS A;  1OZZ A;  3QFU A;  1POI A;  5AQU A;  2QWN A;  2MN5 A;  1KAX A;  2QW9 A;  5EX5 A;  1N4N A;  3HSC A;  1ZUT A;  3LDL A;  1ICA A;  2KGQ A;  1JZA A;  2BUP A;  2E3G A;  3D2F A;  3D2F B;  3R2V A;  4UAE F;  5FPM A;  1DQ7 A;  5AQP A;  2SN3 A;  2N2Q A;  1KV0 A;  1YUW A;  1VNA A;  3GKU A;  3I33 A;  3KP0 A;  4UJ0 A;  1NGG A;  1B7D A;  3JXU A;  3QFP A;  3KC6 A;  1QQO A;  3GL1 A;  2G2K A; 
#chains in the Genus database with same CATH homology
 1I6F A;  1MYN A;  2M8B B;  1ZFU A;  1ZU3 A;  1ZVG A;  2ATB A;  1NPI A;  2GL1 A;  2NY9 X;  4CQK A;  2MZ0 A;  2LJ7 A;  1DJT A;  2YC1 C;  2LY5 A;  2KSK A;  1P00 A;  2ASC A;  3PSM A;  1T0Z A;  1WT7 A;  1BRZ A;  1T7A A;  1T7E A;  2N66 A;  1SEG A;  2NY8 X;  1PX9 A;  2KYQ A;  2KPY A;  1NE5 A;  4V1D C;  1JKZ A;  2LT8 A;  2N2R A;  1OMY A;  1PE4 A;  5CY0 A;  1JXC A;  2LKB A;  4KYP A;  1MR4 A;  2B68 A;  1ZVE A;  2I61 A;  1AHO A;  1C55 A;  1L4V A;  1BCG A;  3E7U X;  2KBJ A;  2A7T A;  2N69 A;  1ZYV A;  1T7B A;  1T1T A;  4AAZ A;  1I6G A;  1FH3 A;  1BMR A;  4AEI A;  1GPT A;  1NH5 A;  1LQI A;  1NRA A;  1TI5 A;  1LQH A;  1SN4 A;  1VNB A;  1WMT A;  2YBR C;  2BRZ A;  1B3C A;  2KBK A;  2KBH A;  1NRB A;  1I2V A;  1GPS A;  1ZYW A;  4AB0 A;  1AYJ A;  1PTX A;  2KJA A;  2E0H A;  1JZB A;  1CHZ A;  2YEO A;  1BK8 A;  2E3F A;  4HE7 A;  1CN2 A;  1WWN A;  1SNB A;  5KK4 A;  1I2U A;  2B3C A;  1P0A A;  2LJM A;  1SN1 A;  1LQQ A;  2LR3 A;  4HHF A;  1C56 A;  3E7R L;  2LI7 A;  2LY6 A;  1OZZ A;  1N4N A;  1ZUT A;  1ICA A;  2KGQ A;  1JZA A;  2E3G A;  1DQ7 A;  2SN3 A;  2N2Q A;  1KV0 A;  1VNA A;  4UJ0 A;  1B7D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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