2NY8X

Nmr structure of antibacterial defensin def-aaa from the insect anopheles gambiae
Total Genus 5

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
40
structure length
40
Chain Sequence
ATCDLASGFGVGSSLCAAHCIARRYRGGYCNSKAVCVCRN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TII'1 (1-4)O1 (3-30)AH1 (15-21)O2 (16-36)S2 (38-39)EMPTYS1 (27-28)TIV2 (21-24)TIV3 (31-34)Updating...
connected with : NaN
molecule tags Antimicrobial protein
source organism Anopheles gambiae
publication title Rational design of peptides active against the gram positive bacteria Staphylococcus aureus
pubmed doi rcsb
molecule keywords defensin
total genus 5
structure length 40
sequence length 40
ec nomenclature
pdb deposition date 2006-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF01097 Defensin_2 Arthropod defensin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 2ny8X00
4AB0A 1P0AA 2NY8X 2KBJA 1BMRA 2M8BB 1DJTA 3E7RL 1SN4A 2LY6A 1BK8A 1I2UA 1ZYWA 2E3GA 1NPIA 1LQHA 1NRAA 1OZZA 1T7EA 1JXCA 2B3CA 2B68A 2KSKA 2LT8A 1CN2A 1N4NA 3E7UX 1MYNA 1VNAA 1NE5A 2LY5A 1TI5A 4KYPA 4AAZA 1ZYVA 2YC1C 1AYJA 2E3FA 2I61A 1LQIA 2KGQA 1SEGA 1SNBA 2BRZA 1C55A 1ZUTA 1BCGA 1B3CA 1L4VA 1DQ7A 2YBRC 1NRBA 2N2QA 1ZVEA 2SN3A 1LQQA 1T7BA 1JKZA 2A7TA 1KV0A 1PX9A 1SN1A 4AEIA 4UJ0A 2N69A 1C56A 2LR3A 2ATBA 1NH5A 2LKBA 1AHOA 1T0ZA 2GL1A 3PSMA 5CY0A 1PE4A 1GPTA 1CHZA 1T1TA 2KYQA 2N66A 5KK4A 1ZU3A 1T7AA 1I6GA 1WT7A 1BRZA 2LJMA 4HE7A 1ICAA 1JZBA 2MZ0A 2NY9X 2KBKA 1VNBA 4V1DC 4CQKA 1I2VA 2YEOA 1P00A 2ASCA 1PTXA 1WMTA 1MR4A 1GPSA 1I6FA 1OMYA 2KJAA 1ZVGA 2N2RA 2KBHA 4HHFA 1FH3A 2LI7A 1JZAA 2E0HA 2LJ7A 1WWNA 1ZFUA 1B7DA 2KPYA
chains in the Genus database with same CATH superfamily
3AY9A 3KOWA 3LDQA 1HPMA 5AQXA 4AB0A 4H5WA 1QQNA 1P0AA 2K35A 2NY8X 3KOXA 2KBJA 1BMRA 2M8BB 5F1XA 1K8BA 1DJTA 2VY6A 3E7RL 3I33A 1NGFA 3KP1A 1SN4A 2LY6A 1KAXA 3LDPA 5AQPA 1BK8A 5BPNA 1I2UA 1ZYWA 2E3GA 5EY4A 2QWLA 3QI7A 3KOYA 1NPIA 5EVZA 1LQHA 2YIOA 1NRAA 1OZZA 1T7EA 3IUCA 5AQGA 5AQQA 1JXCA 2B3CA 4IO8A 2B68A 2YILA 2KSKA 3CW4A 2LT8A 1CN2A 1N4NA 1S3XA 3M3ZA 3E7UX 1MYNA 1HJOA 5BPMA 2QWQA 1VNAA 1NE5A 2LY5A 2D56A 2QWNA 1NGJA 3QFUA 1TI5A 1BA0A 3A8YA 4KYPA 5AQSA 4AAZA 3FZHA 4H5TA 1ZYVA 2YC1C 1AYJA 2QW9A 3ATVA 2QWOA 2E3FA 2I61A 1NGIA 1LQIA 5AQVA 5EXWA 3KOZA 5AQJA 3FZLA 2KGQA 5AQOA 1SEGA 3QMLA 4UAEF 1SNBA 1NGBA 2BRZA 1C55A 3D2FA 3FZKA 1ZUTA 1BCGA 2QWPA 3LDOA 1B3CA 2QWMA 3D2EA 1DKGD 1L4VA 1DQ7A 2E8AA 1NGEA 1YUWA 3LDNA 5AQLA 2YBRC 5AR0A 3HSCA 3FZMA 1NGAA 2E88A 1NRBA 2N2QA 1I6GA 3KHWA 1ZVEA 2SN3A 4FL9A 3JXUA 1LQQA 4H5VA 1T7BA 3GL1A 1JKZA 3D2EB 3QFPA 2A7TA 5AQYA 3LDLA 3BK3C 3R2VA 1KV0A 1PX9A 1SN1A 3FE1A 4AEIA 4UJ0A 5FPMA 2N69A 1POIA 1C56A 2LR3A 5AQIA 3L56A 5AQUA 5FPNA 2QWRA 1NGCA 2ATBA 1NH5A 2LKBA 2GMOA 1AHOA 1T0ZA 2QXLA 2GL1A 3FZFA 3GKUA 1BA1A 1UGLA 3PSMA 5CY0A 1PE4A 5AQRA 2MBKA 5FPEA 1GPTA 5AQZA 5FPDA 1ATSA 1CHZA 3CQXA 1T1TA 2KYQA 2N66A 4HWIA 1ZU3A 1T7AA 4UAFE 5AQKA 5BPLA 5KK4A 3SF4D 1WT7A 3KP0A 5AQWA 4KBOA 3KVGA 1BRZA 2LJMA 4H5RA 3ATUA 4FSVA 3D2FB 5AQMA 2V7ZA 2E2FA 4HE7A 5AQHA 1ICAA 1JZBA 2MZ0A 2NY9X 2KBKA 1VNBA 1KAYA 4GNIA 4UADE 4V1DC 2YEOA 4CQKA 1P00A 2ASCA 3L6QA 1I2VA 1PTXA 1WMTA 1BUPA 1MR4A 1GPSA 3C7NA 1QQMA 1I6FA 3GDQA 2MN5A 1HX1A 1NGHA 1OMYA 2KJAA 1ZVGA 1XRSB 2YIPA 3KC6A 5AQNA 5BN9A 4H5NA 1ATRA 2N2RA 5F0XA 2KHOA 2BUPA 2KBHA 2G2KA 4HHFA 5AQFA 1QQOA 2LI7A 1FH3A 5EX5A 1JZAA 2E0HA 2LJ7A 3C7NB 5AQTA 3L4IA 1KAZA 1WWNA 1ZFUA 1NGDA 1B7DA 5F2RA 2LN8A 2JDQD 2KPYA 1NGGA 5BN8A
chains in the Genus database with same CATH topology
4AB0A 1P0AA 2NY8X 2KBJA 1BMRA 2M8BB 1DJTA 3E7RL 1SN4A 2LY6A 1BK8A 1I2UA 1ZYWA 2E3GA 1NPIA 1LQHA 1NRAA 1OZZA 1T7EA 1JXCA 2B3CA 2B68A 2KSKA 2LT8A 1CN2A 1N4NA 3E7UX 1MYNA 1VNAA 1NE5A 2LY5A 1TI5A 4KYPA 4AAZA 1ZYVA 2YC1C 1AYJA 2E3FA 2I61A 1LQIA 2KGQA 1SEGA 1SNBA 2BRZA 1C55A 1ZUTA 1BCGA 1B3CA 1L4VA 1DQ7A 2YBRC 1NRBA 2N2QA 1ZVEA 2SN3A 1LQQA 1T7BA 1JKZA 2A7TA 1KV0A 1PX9A 1SN1A 4AEIA 4UJ0A 2N69A 1C56A 2LR3A 2ATBA 1NH5A 2LKBA 1AHOA 1T0ZA 2GL1A 3PSMA 5CY0A 1PE4A 1GPTA 1CHZA 1T1TA 2KYQA 2N66A 5KK4A 1ZU3A 1T7AA 1I6GA 1WT7A 1BRZA 2LJMA 4HE7A 1ICAA 1JZBA 2MZ0A 2NY9X 2KBKA 1VNBA 4V1DC 4CQKA 1I2VA 2YEOA 1P00A 2ASCA 1PTXA 1WMTA 1MR4A 1GPSA 1I6FA 1OMYA 2KJAA 1ZVGA 2N2RA 2KBHA 4HHFA 1FH3A 2LI7A 1JZAA 2E0HA 2LJ7A 1WWNA 1ZFUA 1B7DA 2KPYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AB0 A;  1P0A A;  2NY8 X;  2KBJ A;  1BMR A;  2M8B B;  1DJT A;  3E7R L;  1SN4 A;  2LY6 A;  1BK8 A;  1I2U A;  1ZYW A;  2E3G A;  1NPI A;  1LQH A;  1NRA A;  1OZZ A;  1T7E A;  1JXC A;  2B3C A;  2B68 A;  2KSK A;  2LT8 A;  1CN2 A;  1N4N A;  3E7U X;  1MYN A;  1VNA A;  1NE5 A;  2LY5 A;  1TI5 A;  4KYP A;  4AAZ A;  1ZYV A;  2YC1 C;  1AYJ A;  2E3F A;  2I61 A;  1LQI A;  2KGQ A;  1SEG A;  1SNB A;  2BRZ A;  1C55 A;  1ZUT A;  1BCG A;  1B3C A;  1L4V A;  1DQ7 A;  2YBR C;  1NRB A;  2N2Q A;  1ZVE A;  2SN3 A;  1LQQ A;  1T7B A;  1JKZ A;  2A7T A;  1KV0 A;  1PX9 A;  1SN1 A;  4AEI A;  4UJ0 A;  2N69 A;  1C56 A;  2LR3 A;  2ATB A;  1NH5 A;  2LKB A;  1AHO A;  1T0Z A;  2GL1 A;  3PSM A;  5CY0 A;  1PE4 A;  1GPT A;  1CHZ A;  1T1T A;  2KYQ A;  2N66 A;  5KK4 A;  1ZU3 A;  1T7A A;  1I6G A;  1WT7 A;  1BRZ A;  2LJM A;  4HE7 A;  1ICA A;  1JZB A;  2MZ0 A;  2NY9 X;  2KBK A;  1VNB A;  4V1D C;  4CQK A;  1I2V A;  2YEO A;  1P00 A;  2ASC A;  1PTX A;  1WMT A;  1MR4 A;  1GPS A;  1I6F A;  1OMY A;  2KJA A;  1ZVG A;  2N2R A;  2KBH A;  4HHF A;  1FH3 A;  2LI7 A;  1JZA A;  2E0H A;  2LJ7 A;  1WWN A;  1ZFU A;  1B7D A;  2KPY A; 
#chains in the Genus database with same CATH topology
 3AY9 A;  3KOW A;  3LDQ A;  1HPM A;  5AQX A;  4AB0 A;  4H5W A;  1QQN A;  1P0A A;  2K35 A;  2NY8 X;  3KOX A;  2KBJ A;  1BMR A;  2M8B B;  5F1X A;  1K8B A;  1DJT A;  2VY6 A;  3E7R L;  3I33 A;  1NGF A;  3KP1 A;  1SN4 A;  2LY6 A;  1KAX A;  3LDP A;  5AQP A;  1BK8 A;  5BPN A;  1I2U A;  1ZYW A;  2E3G A;  5EY4 A;  2QWL A;  3QI7 A;  3KOY A;  1NPI A;  5EVZ A;  1LQH A;  2YIO A;  1NRA A;  1OZZ A;  1T7E A;  3IUC A;  5AQG A;  5AQQ A;  1JXC A;  2B3C A;  4IO8 A;  2B68 A;  2YIL A;  2KSK A;  3CW4 A;  2LT8 A;  1CN2 A;  1N4N A;  1S3X A;  3M3Z A;  3E7U X;  1MYN A;  1HJO A;  5BPM A;  2QWQ A;  1VNA A;  1NE5 A;  2LY5 A;  2D56 A;  2QWN A;  1NGJ A;  3QFU A;  1TI5 A;  1BA0 A;  3A8Y A;  4KYP A;  5AQS A;  4AAZ A;  3FZH A;  4H5T A;  1ZYV A;  2YC1 C;  1AYJ A;  2QW9 A;  3ATV A;  2QWO A;  2E3F A;  2I61 A;  1NGI A;  1LQI A;  5AQV A;  5EXW A;  3KOZ A;  5AQJ A;  3FZL A;  2KGQ A;  5AQO A;  1SEG A;  3QML A;  4UAE F;  1SNB A;  1NGB A;  2BRZ A;  1C55 A;  3D2F A;  3FZK A;  1ZUT A;  1BCG A;  2QWP A;  3LDO A;  1B3C A;  2QWM A;  3D2E A;  1DKG D;  1L4V A;  1DQ7 A;  2E8A A;  1NGE A;  1YUW A;  3LDN A;  5AQL A;  2YBR C;  5AR0 A;  3HSC A;  3FZM A;  1NGA A;  2E88 A;  1NRB A;  2N2Q A;  1I6G A;  3KHW A;  1ZVE A;  2SN3 A;  4FL9 A;  3JXU A;  1LQQ A;  4H5V A;  1T7B A;  3GL1 A;  1JKZ A;  3D2E B;  3QFP A;  2A7T A;  5AQY A;  3LDL A;  3BK3 C;  3R2V A;  1KV0 A;  1PX9 A;  1SN1 A;  3FE1 A;  4AEI A;  4UJ0 A;  5FPM A;  2N69 A;  1POI A;  1C56 A;  2LR3 A;  5AQI A;  3L56 A;  5AQU A;  5FPN A;  2QWR A;  1NGC A;  2ATB A;  1NH5 A;  2LKB A;  2GMO A;  1AHO A;  1T0Z A;  2QXL A;  2GL1 A;  3FZF A;  3GKU A;  1BA1 A;  1UGL A;  3PSM A;  5CY0 A;  1PE4 A;  5AQR A;  2MBK A;  5FPE A;  1GPT A;  5AQZ A;  5FPD A;  1ATS A;  1CHZ A;  3CQX A;  1T1T A;  2KYQ A;  2N66 A;  4HWI A;  1ZU3 A;  1T7A A;  4UAF E;  5AQK A;  5BPL A;  5KK4 A;  3SF4 D;  1WT7 A;  3KP0 A;  5AQW A;  4KBO A;  3KVG A;  1BRZ A;  2LJM A;  4H5R A;  3ATU A;  4FSV A;  3D2F B;  5AQM A;  2V7Z A;  2E2F A;  4HE7 A;  5AQH A;  1ICA A;  1JZB A;  2MZ0 A;  2NY9 X;  2KBK A;  1VNB A;  1KAY A;  4GNI A;  4UAD E;  4V1D C;  2YEO A;  4CQK A;  1P00 A;  2ASC A;  3L6Q A;  1I2V A;  1PTX A;  1WMT A;  1BUP A;  1MR4 A;  1GPS A;  3C7N A;  1QQM A;  1I6F A;  3GDQ A;  2MN5 A;  1HX1 A;  1NGH A;  1OMY A;  2KJA A;  1ZVG A;  1XRS B;  2YIP A;  3KC6 A;  5AQN A;  5BN9 A;  4H5N A;  1ATR A;  2N2R A;  5F0X A;  2KHO A;  2BUP A;  2KBH A;  2G2K A;  4HHF A;  5AQF A;  1QQO A;  2LI7 A;  1FH3 A;  5EX5 A;  1JZA A;  2E0H A;  2LJ7 A;  3C7N B;  5AQT A;  3L4I A;  1KAZ A;  1WWN A;  1ZFU A;  1NGD A;  1B7D A;  5F2R A;  2LN8 A;  2JDQ D;  2KPY A;  1NGG A;  5BN8 A; 
#chains in the Genus database with same CATH homology
 4AB0 A;  1P0A A;  2NY8 X;  2KBJ A;  1BMR A;  2M8B B;  1DJT A;  3E7R L;  1SN4 A;  2LY6 A;  1BK8 A;  1I2U A;  1ZYW A;  2E3G A;  1NPI A;  1LQH A;  1NRA A;  1OZZ A;  1T7E A;  1JXC A;  2B3C A;  2B68 A;  2KSK A;  2LT8 A;  1CN2 A;  1N4N A;  3E7U X;  1MYN A;  1VNA A;  1NE5 A;  2LY5 A;  1TI5 A;  4KYP A;  4AAZ A;  1ZYV A;  2YC1 C;  1AYJ A;  2E3F A;  2I61 A;  1LQI A;  2KGQ A;  1SEG A;  1SNB A;  2BRZ A;  1C55 A;  1ZUT A;  1BCG A;  1B3C A;  1L4V A;  1DQ7 A;  2YBR C;  1NRB A;  2N2Q A;  1ZVE A;  2SN3 A;  1LQQ A;  1T7B A;  1JKZ A;  2A7T A;  1KV0 A;  1PX9 A;  1SN1 A;  4AEI A;  4UJ0 A;  2N69 A;  1C56 A;  2LR3 A;  2ATB A;  1NH5 A;  2LKB A;  1AHO A;  1T0Z A;  2GL1 A;  3PSM A;  5CY0 A;  1PE4 A;  1GPT A;  1CHZ A;  1T1T A;  2KYQ A;  2N66 A;  5KK4 A;  1ZU3 A;  1T7A A;  1I6G A;  1WT7 A;  1BRZ A;  2LJM A;  4HE7 A;  1ICA A;  1JZB A;  2MZ0 A;  2NY9 X;  2KBK A;  1VNB A;  4V1D C;  4CQK A;  1I2V A;  2YEO A;  1P00 A;  2ASC A;  1PTX A;  1WMT A;  1MR4 A;  1GPS A;  1I6F A;  1OMY A;  2KJA A;  1ZVG A;  2N2R A;  2KBH A;  4HHF A;  1FH3 A;  2LI7 A;  1JZA A;  2E0H A;  2LJ7 A;  1WWN A;  1ZFU A;  1B7D A;  2KPY A; 
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