2VY6A

Two domains from the c-terminal region of influenza a virus polymerase pb2 subunit
Total Genus 58
204060801001201401601800102030405060
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
204
structure length
196
Chain Sequence
EINGPESVLVNTYQWIIRNWETVKIQWSQNPTMLYNKMEFEPFQSLVPKAIRGQYSGFVRTLFQQMRDVLGTFDTTQIIKLLPFAAAPPKQSRMQFSSLTVNVRGSGMRILVRGNSPVFNYNKTTKRLTILGKDAGTLIEVESAVLRGFLILGKEDRRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRDS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transcription
source organism Influenza a virus
publication title Host Determinant Residue Lysine 627 Lies on the Surface of a Discrete, Folded Domain of Influenza Virus Polymerase Pb2 Subunit
pubmed doi rcsb
molecule keywords POLYMERASE BASIC PROTEIN 2
total genus 58
structure length 196
sequence length 204
ec nomenclature
pdb deposition date 2008-07-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.90 Alpha Beta 2-Layer Sandwich Defensin A-like Defensin A-like 2vy6A02
3KC6A 3R2VA 2VY6A 3KHWA 3L56A 2JDQD 2GMOA 4UAEF 3CW4A 4UAFE 4UADE
chains in the Genus database with same CATH superfamily
1NGFA 3R2VA 2LJ7A 4FL9A 5EX5A 2V7ZA 1WWNA 5FPDA 2KGQA 2LT8A 1QQMA 3KP1A 1JXCA 2YC1C 2YIOA 1P00A 1GPSA 2K35A 5AQIA 3ATVA 4H5NA 3C7NB 2NY8X 1I6GA 1PTXA 1NRAA 2LY5A 4KYPA 4UJ0A 3LDOA 1NE5A 4H5WA 3LDQA 4AEIA 2KHOA 5AQKA 1PX9A 2KBHA 3E7RL 3FZMA 1NGBA 3FE1A 1NGGA 3LDPA 2MBKA 5AQOA 2ASCA 2QW9A 1K8BA 2BRZA 3D2EA 3QI7A 1HJOA 1P0AA 2LJMA 2QWMA 3KVGA 2KSKA 4HWIA 5AQVA 2E8AA 3L56A 2YILA 1NGAA 2E2FA 2KYQA 5BPMA 5F1XA 4UAFE 1ATSA 4HE7A 5EY4A 1ZVEA 3FZKA 2I61A 4H5VA 1DQ7A 2VY6A 3AY9A 3HSCA 5AQGA 1DJTA 5BN9A 4AB0A 5F0XA 1BK8A 3L6QA 1NGEA 2BUPA 4FSVA 3GKUA 1BMRA 1LQQA 2KJAA 1C55A 2QWOA 1I2VA 3SF4D 1QQNA 2M8BB 2NY9X 5AQYA 4KBOA 1WT7A 5CY0A 3A8YA 1KAZA 1NGDA 1QQOA 1CN2A 3LDNA 3KC6A 3KP0A 5AQNA 1AHOA 1KAXA 1VNBA 1ZFUA 2D56A 1BUPA 1TI5A 2QWNA 2GMOA 2YIPA 1ZU3A 2QXLA 5AQPA 5AR0A 5AQQA 1UGLA 2N69A 2YBRC 5AQLA 1BCGA 1ZUTA 4HHFA 3ATUA 1S3XA 1T7EA 2QWLA 4UAEF 1KAYA 3IUCA 5AQZA 1POIA 3GL1A 1NH5A 5EVZA 3QFPA 1CHZA 1ZYVA 2B3CA 5AQRA 1HX1A 1JZAA 1LQIA 1I6FA 2KBKA 2SN3A 3FZHA 1AYJA 2JDQD 1NPIA 2QWRA 3JXUA 4H5TA 5AQFA 1JKZA 1L4VA 1HPMA 2LR3A 3FZLA 1FH3A 1OMYA 1C56A 1SN4A 1BA1A 4AAZA 3KOXA 2ATBA 1LQHA 3D2FA 1ATRA 3KOZA 1YUWA 1B3CA 1T1TA 1ZYWA 2N2RA 3KHWA 4H5RA 1WMTA 3E7UX 3KOYA 5EXWA 1NGCA 2KPYA 2QWPA 1ZVGA 1BA0A 3KOWA 1T0ZA 3LDLA 5AQUA 5AQHA 5FPEA 2LKBA 3GDQA 1NGIA 4CQKA 1NGHA 1NRBA 2YEOA 2LN8A 5AQTA 5BN8A 1B7DA 3D2EB 2LY6A 5AQJA 1PE4A 1MR4A 1KV0A 3I33A 3C7NA 1XRSB 3BK3C 5KK4A 2B68A 3CW4A 1DKGD 4GNIA 5AQMA 3QMLA 1GPTA 5BPLA 1MYNA 2E0HA 1JZBA 3QFUA 5AQXA 5FPNA 2QWQA 2E3GA 1N4NA 2E3FA 5AQWA 2MZ0A 5BPNA 2KBJA 2GL1A 1ICAA 1SNBA 1T7AA 2E88A 2LI7A 1BRZA 3PSMA 1T7BA 1NGJA 5FPMA 4IO8A 2MN5A 2N66A 3D2FB 5AQSA 1SN1A 1VNAA 2G2KA 1OZZA 1SEGA 2N2QA 2A7TA 3FZFA 4V1DC 5F2RA 3M3ZA 3CQXA 1I2UA 3L4IA 4UADE
chains in the Genus database with same CATH topology
1NGFA 3R2VA 4FL9A 5EX5A 2V7ZA 5FPDA 1QQMA 2YIOA 2K35A 5AQIA 3ATVA 4H5NA 3C7NB 3LDOA 4H5WA 3LDQA 2KHOA 5AQKA 3FZMA 1NGBA 3FE1A 1NGGA 3LDPA 2MBKA 5AQOA 2QW9A 3D2EA 3QI7A 1HJOA 2QWMA 3KVGA 4HWIA 5AQVA 2E8AA 3L56A 2YILA 1NGAA 2E2FA 5BPMA 5F1XA 4UAFE 1ATSA 5EY4A 3FZKA 4H5VA 5AQGA 5BN9A 2VY6A 3AY9A 3HSCA 5F0XA 3L6QA 1NGEA 2BUPA 4FSVA 2QWOA 3SF4D 1QQNA 5AQYA 4KBOA 3A8YA 1KAZA 1NGDA 1QQOA 3LDNA 3KC6A 5AQNA 1KAXA 2QWNA 2D56A 1BUPA 5AR0A 2GMOA 2YIPA 2QXLA 5AQPA 5AQQA 5AQLA 3ATUA 1S3XA 2QWLA 4UAEF 1KAYA 3IUCA 5AQZA 1POIA 3GL1A 5EVZA 3QFPA 5AQRA 1HX1A 3FZHA 2JDQD 2QWRA 4H5TA 3JXUA 5AQFA 1HPMA 3FZLA 1BA1A 3D2FA 1ATRA 1YUWA 4H5RA 3KHWA 5EXWA 1NGCA 3LDLA 2QWPA 5AQUA 1BA0A 5FPEA 5AQHA 3GDQA 1NGIA 1NGHA 2LN8A 5AQTA 5BN8A 3D2EB 5AQJA 3I33A 3C7NA 3BK3C 3CW4A 1DKGD 4GNIA 5AQMA 3QMLA 5BPLA 3QFUA 5AQXA 5FPNA 2QWQA 5AQWA 5BPNA 2E88A 1NGJA 5FPMA 4IO8A 2MN5A 3D2FB 5AQSA 3FZFA 5F2RA 3M3ZA 3CQXA 3L4IA 4UADE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KC6 A;  3R2V A;  2VY6 A;  3KHW A;  3L56 A;  2JDQ D;  2GMO A;  4UAE F;  3CW4 A;  4UAF E;  4UAD E; 
#chains in the Genus database with same CATH topology
 1NGF A;  3R2V A;  2LJ7 A;  4FL9 A;  5EX5 A;  2V7Z A;  1WWN A;  5FPD A;  2KGQ A;  2LT8 A;  1QQM A;  3KP1 A;  1JXC A;  2YC1 C;  2YIO A;  1P00 A;  1GPS A;  2K35 A;  5AQI A;  3ATV A;  4H5N A;  3C7N B;  2NY8 X;  1I6G A;  1PTX A;  1NRA A;  2LY5 A;  4KYP A;  4UJ0 A;  3LDO A;  1NE5 A;  4H5W A;  3LDQ A;  4AEI A;  2KHO A;  5AQK A;  1PX9 A;  2KBH A;  3E7R L;  3FZM A;  1NGB A;  3FE1 A;  1NGG A;  3LDP A;  2MBK A;  5AQO A;  2ASC A;  2QW9 A;  1K8B A;  2BRZ A;  3D2E A;  3QI7 A;  1HJO A;  1P0A A;  2LJM A;  2QWM A;  3KVG A;  2KSK A;  4HWI A;  5AQV A;  2E8A A;  3L56 A;  2YIL A;  1NGA A;  2E2F A;  2KYQ A;  5BPM A;  5F1X A;  4UAF E;  1ATS A;  4HE7 A;  5EY4 A;  1ZVE A;  3FZK A;  2I61 A;  4H5V A;  1DQ7 A;  2VY6 A;  3AY9 A;  3HSC A;  5AQG A;  1DJT A;  5BN9 A;  4AB0 A;  5F0X A;  1BK8 A;  3L6Q A;  1NGE A;  2BUP A;  4FSV A;  3GKU A;  1BMR A;  1LQQ A;  2KJA A;  1C55 A;  2QWO A;  1I2V A;  3SF4 D;  1QQN A;  2M8B B;  2NY9 X;  5AQY A;  4KBO A;  1WT7 A;  5CY0 A;  3A8Y A;  1KAZ A;  1NGD A;  1QQO A;  1CN2 A;  3LDN A;  3KC6 A;  3KP0 A;  5AQN A;  1AHO A;  1KAX A;  1VNB A;  1ZFU A;  2D56 A;  1BUP A;  1TI5 A;  2QWN A;  2GMO A;  2YIP A;  1ZU3 A;  2QXL A;  5AQP A;  5AR0 A;  5AQQ A;  1UGL A;  2N69 A;  2YBR C;  5AQL A;  1BCG A;  1ZUT A;  4HHF A;  3ATU A;  1S3X A;  1T7E A;  2QWL A;  4UAE F;  1KAY A;  3IUC A;  5AQZ A;  1POI A;  3GL1 A;  1NH5 A;  5EVZ A;  3QFP A;  1CHZ A;  1ZYV A;  2B3C A;  5AQR A;  1HX1 A;  1JZA A;  1LQI A;  1I6F A;  2KBK A;  2SN3 A;  3FZH A;  1AYJ A;  2JDQ D;  1NPI A;  2QWR A;  3JXU A;  4H5T A;  5AQF A;  1JKZ A;  1L4V A;  1HPM A;  2LR3 A;  3FZL A;  1FH3 A;  1OMY A;  1C56 A;  1SN4 A;  1BA1 A;  4AAZ A;  3KOX A;  2ATB A;  1LQH A;  3D2F A;  1ATR A;  3KOZ A;  1YUW A;  1B3C A;  1T1T A;  1ZYW A;  2N2R A;  3KHW A;  4H5R A;  1WMT A;  3E7U X;  3KOY A;  5EXW A;  1NGC A;  2KPY A;  2QWP A;  1ZVG A;  1BA0 A;  3KOW A;  1T0Z A;  3LDL A;  5AQU A;  5AQH A;  5FPE A;  2LKB A;  3GDQ A;  1NGI A;  4CQK A;  1NGH A;  1NRB A;  2YEO A;  2LN8 A;  5AQT A;  5BN8 A;  1B7D A;  3D2E B;  2LY6 A;  5AQJ A;  1PE4 A;  1MR4 A;  1KV0 A;  3I33 A;  3C7N A;  1XRS B;  3BK3 C;  5KK4 A;  2B68 A;  3CW4 A;  1DKG D;  4GNI A;  5AQM A;  3QML A;  1GPT A;  5BPL A;  1MYN A;  2E0H A;  1JZB A;  3QFU A;  5AQX A;  5FPN A;  2QWQ A;  2E3G A;  1N4N A;  2E3F A;  5AQW A;  2MZ0 A;  5BPN A;  2KBJ A;  2GL1 A;  1ICA A;  1SNB A;  1T7A A;  2E88 A;  2LI7 A;  1BRZ A;  3PSM A;  1T7B A;  1NGJ A;  5FPM A;  4IO8 A;  2MN5 A;  2N66 A;  3D2F B;  5AQS A;  1SN1 A;  1VNA A;  2G2K A;  1OZZ A;  1SEG A;  2N2Q A;  2A7T A;  3FZF A;  4V1D C;  5F2R A;  3M3Z A;  3CQX A;  1I2U A;  3L4I A;  4UAD E; 
#chains in the Genus database with same CATH homology
 1NGF A;  3R2V A;  4FL9 A;  5EX5 A;  2V7Z A;  5FPD A;  1QQM A;  2YIO A;  2K35 A;  5AQI A;  3ATV A;  4H5N A;  3C7N B;  3LDO A;  4H5W A;  3LDQ A;  2KHO A;  5AQK A;  3FZM A;  1NGB A;  3FE1 A;  1NGG A;  3LDP A;  2MBK A;  5AQO A;  2QW9 A;  3D2E A;  3QI7 A;  1HJO A;  2QWM A;  3KVG A;  4HWI A;  5AQV A;  2E8A A;  3L56 A;  2YIL A;  1NGA A;  2E2F A;  5BPM A;  5F1X A;  4UAF E;  1ATS A;  5EY4 A;  3FZK A;  4H5V A;  5AQG A;  5BN9 A;  2VY6 A;  3AY9 A;  3HSC A;  5F0X A;  3L6Q A;  1NGE A;  2BUP A;  4FSV A;  2QWO A;  3SF4 D;  1QQN A;  5AQY A;  4KBO A;  3A8Y A;  1KAZ A;  1NGD A;  1QQO A;  3LDN A;  3KC6 A;  5AQN A;  1KAX A;  2QWN A;  2D56 A;  1BUP A;  5AR0 A;  2GMO A;  2YIP A;  2QXL A;  5AQP A;  5AQQ A;  5AQL A;  3ATU A;  1S3X A;  2QWL A;  4UAE F;  1KAY A;  3IUC A;  5AQZ A;  1POI A;  3GL1 A;  5EVZ A;  3QFP A;  5AQR A;  1HX1 A;  3FZH A;  2JDQ D;  2QWR A;  4H5T A;  3JXU A;  5AQF A;  1HPM A;  3FZL A;  1BA1 A;  3D2F A;  1ATR A;  1YUW A;  4H5R A;  3KHW A;  5EXW A;  1NGC A;  3LDL A;  2QWP A;  5AQU A;  1BA0 A;  5FPE A;  5AQH A;  3GDQ A;  1NGI A;  1NGH A;  2LN8 A;  5AQT A;  5BN8 A;  3D2E B;  5AQJ A;  3I33 A;  3C7N A;  3BK3 C;  3CW4 A;  1DKG D;  4GNI A;  5AQM A;  3QML A;  5BPL A;  3QFU A;  5AQX A;  5FPN A;  2QWQ A;  5AQW A;  5BPN A;  2E88 A;  1NGJ A;  5FPM A;  4IO8 A;  2MN5 A;  3D2F B;  5AQS A;  3FZF A;  5F2R A;  3M3Z A;  3CQX A;  3L4I A;  4UAD E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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