2SN3A

Structure of scorpion toxin variant-3 at 1.2 angstroms resolution
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
65
structure length
65
Chain Sequence
KEGYLVKKSDGCKYGCLKLGENEGCDTECKAKNQGGSYGYCYAFACWCEGLPESTPTYPLPNKSC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of scorpion toxin variant-3 at 1.2 A resolution.
pubmed doi rcsb
molecule keywords SCORPION NEUROTOXIN (VARIANT 3)
molecule tags Toxin
source organism Centruroides exilicauda
total genus 17
structure length 65
sequence length 65
ec nomenclature
pdb deposition date 1992-02-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00537 Toxin_3 Scorpion toxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 2sn3A00
1BK8A 2YEOA 2NY9X 1WMTA 2NY8X 1VNBA 1DQ7A 2KSKA 1ZYWA 1WT7A 1TI5A 2LY5A 1JKZA 2LY6A 2ASCA 1T1TA 1L4VA 2ATBA 2YC1C 1MR4A 1ICAA 1VNAA 1LQQA 1C55A 1I2UA 1ZU3A 1JXCA 1ZUTA 4V1DC 1NRAA 2I61A 4AEIA 1NH5A 1I2VA 2E0HA 1KV0A 3E7UX 1PX9A 2MZ0A 2SN3A 1ZVEA 2KBKA 1ZFUA 1P00A 4KYPA 2LI7A 1ZYVA 4AB0A 1T7AA 1BMRA 1T0ZA 1MYNA 2N66A 2LKBA 4UJ0A 2LR3A 1NPIA 1JZAA 1NE5A 1T7BA 1LQIA 1GPSA 1OZZA 1CHZA 1PTXA 1JZBA 1C56A 2KBJA 1T7EA 1OMYA 1P0AA 1AHOA 4CQKA 1ZVGA 2E3GA 1SNBA 1N4NA 1PE4A 2KYQA 1I6GA 2KJAA 2M8BB 3E7RL 2KPYA 1LQHA 1WWNA 2N2QA 2E3FA 2GL1A 2YBRC 5CY0A 1AYJA 1SEGA 1SN1A 1BCGA 2B3CA 1SN4A 1B3CA 1CN2A 4AAZA 2LJMA 1BRZA 1I6FA 2A7TA 2LJ7A 1GPTA 2KBHA 1DJTA 1FH3A 1NRBA 2LT8A 2N69A 4HE7A 2N2RA 1B7DA 5KK4A 2B68A 2KGQA 2BRZA 3PSMA 4HHFA
chains in the Genus database with same CATH superfamily
1BK8A 3FZHA 2YEOA 2NY9X 1WMTA 2NY8X 1VNBA 1DQ7A 3D2FA 3KOXA 2KSKA 3FZMA 3KOWA 1ZYWA 1WT7A 1TI5A 2LY5A 1JKZA 1ATSA 5AQUA 1S3XA 1KAYA 2LY6A 3ATVA 5F1XA 2ASCA 1T1TA 1NGEA 3D2FB 1L4VA 5EX5A 5FPMA 2ATBA 2QWLA 1MR4A 2YC1C 3QFUA 5AQXA 1ICAA 1VNAA 1LQQA 1C55A 2YIOA 1BUPA 1HJOA 1ZU3A 1QQNA 1JXCA 1ZUTA 3LDQA 4FL9A 1I2UA 4V1DC 1NRAA 2I61A 3KC6A 3L56A 4AEIA 1NH5A 1BA0A 1I2VA 2QXLA 2E0HA 1KV0A 2E8AA 2QWOA 3E7UX 1PX9A 2MZ0A 2D56A 2SN3A 1ZVEA 2KBKA 1ZFUA 3GDQA 5AQIA 1NGDA 3AY9A 1YUWA 5AQHA 1QQOA 1NGAA 2QWMA 1P00A 4KYPA 2LI7A 1ZYVA 3KOZA 4FSVA 4AB0A 5AQZA 1T7AA 1BMRA 5FPDA 1ATRA 3I33A 1T0ZA 2QWQA 2YIPA 4UAEF 2KHOA 1MYNA 2N66A 5AQTA 2LKBA 1K8BA 4UJ0A 2MBKA 3BK3C 5AQYA 2LR3A 1NPIA 1JZAA 1BA1A 5FPEA 1NE5A 3LDLA 5BPLA 3ATUA 1T7BA 1LQIA 2MN5A 2YILA 5AQLA 1NGIA 1GPSA 1UGLA 1OZZA 3SF4D 1CHZA 5AQNA 3KP0A 5AQVA 1NGGA 1PTXA 3QI7A 3GKUA 4IO8A 1HPMA 2G2KA 5EXWA 5AQRA 1JZBA 1C56A 2KBJA 1T7EA 1KAZA 2QW9A 1OMYA 1P0AA 1AHOA 3A8YA 1ZVGA 5EVZA 4CQKA 5AQGA 3D2EA 4UADE 1HX1A 2E3GA 1SNBA 5AQMA 3GL1A 2QWPA 5AQJA 2E2FA 2JDQD 5BN8A 3R2VA 5BPMA 5BPNA 4H5NA 5AR0A 1N4NA 3L6QA 5AQSA 1PE4A 2E88A 3D2EB 2KYQA 4H5RA 1NGFA 5BN9A 3KHWA 3HSCA 1I6GA 2KJAA 4GNIA 5AQOA 2M8BB 3E7RL 2KPYA 1LQHA 5AQWA 1NGHA 1WWNA 2N2QA 1QQMA 2E3FA 2GL1A 2QWRA 2YBRC 1XRSB 1SEGA 3FE1A 3LDOA 2V7ZA 5CY0A 1AYJA 1SN1A 1BCGA 5AQKA 3FZFA 3JXUA 2B3CA 1SN4A 3QMLA 4H5WA 4H5TA 1B3CA 1CN2A 3FZLA 1NGBA 3LDNA 4AAZA 2LN8A 2VY6A 5AQFA 5FPNA 5AQQA 2LJMA 1BRZA 4HWIA 1I6FA 2QWNA 2A7TA 3KVGA 5AQPA 1NGJA 2LJ7A 3QFPA 1GPTA 3C7NA 2KBHA 1DJTA 2BUPA 3FZKA 1NRBA 4UAFE 3M3ZA 5F0XA 1FH3A 3CQXA 2LT8A 4KBOA 2N69A 2K35A 3L4IA 2GMOA 4H5VA 4HE7A 2N2RA 3KOYA 3CW4A 1B7DA 1NGCA 5F2RA 1POIA 3C7NB 5KK4A 1KAXA 1DKGD 2B68A 2KGQA 3KP1A 2BRZA 5EY4A 3LDPA 3IUCA 3PSMA 4HHFA
chains in the Genus database with same CATH topology
1BK8A 2YEOA 2NY9X 1WMTA 2NY8X 1VNBA 1DQ7A 2KSKA 1ZYWA 1WT7A 1TI5A 2LY5A 1JKZA 2LY6A 2ASCA 1T1TA 1L4VA 2ATBA 2YC1C 1MR4A 1ICAA 1VNAA 1LQQA 1C55A 1I2UA 1ZU3A 1JXCA 1ZUTA 4V1DC 1NRAA 2I61A 4AEIA 1NH5A 1I2VA 2E0HA 1KV0A 3E7UX 1PX9A 2MZ0A 2SN3A 1ZVEA 2KBKA 1ZFUA 1P00A 4KYPA 2LI7A 1ZYVA 4AB0A 1T7AA 1BMRA 1T0ZA 1MYNA 2N66A 2LKBA 4UJ0A 2LR3A 1NPIA 1JZAA 1NE5A 1T7BA 1LQIA 1GPSA 1OZZA 1CHZA 1PTXA 1JZBA 1C56A 2KBJA 1T7EA 1OMYA 1P0AA 1AHOA 4CQKA 1ZVGA 2E3GA 1SNBA 1N4NA 1PE4A 2KYQA 1I6GA 2KJAA 2M8BB 3E7RL 2KPYA 1LQHA 1WWNA 2N2QA 2E3FA 2GL1A 2YBRC 5CY0A 1AYJA 1SEGA 1SN1A 1BCGA 2B3CA 1SN4A 1B3CA 1CN2A 4AAZA 2LJMA 1BRZA 1I6FA 2A7TA 2LJ7A 1GPTA 2KBHA 1DJTA 1FH3A 1NRBA 2LT8A 2N69A 4HE7A 2N2RA 1B7DA 5KK4A 2B68A 2KGQA 2BRZA 3PSMA 4HHFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BK8 A;  2YEO A;  2NY9 X;  1WMT A;  2NY8 X;  1VNB A;  1DQ7 A;  2KSK A;  1ZYW A;  1WT7 A;  1TI5 A;  2LY5 A;  1JKZ A;  2LY6 A;  2ASC A;  1T1T A;  1L4V A;  2ATB A;  2YC1 C;  1MR4 A;  1ICA A;  1VNA A;  1LQQ A;  1C55 A;  1I2U A;  1ZU3 A;  1JXC A;  1ZUT A;  4V1D C;  1NRA A;  2I61 A;  4AEI A;  1NH5 A;  1I2V A;  2E0H A;  1KV0 A;  3E7U X;  1PX9 A;  2MZ0 A;  2SN3 A;  1ZVE A;  2KBK A;  1ZFU A;  1P00 A;  4KYP A;  2LI7 A;  1ZYV A;  4AB0 A;  1T7A A;  1BMR A;  1T0Z A;  1MYN A;  2N66 A;  2LKB A;  4UJ0 A;  2LR3 A;  1NPI A;  1JZA A;  1NE5 A;  1T7B A;  1LQI A;  1GPS A;  1OZZ A;  1CHZ A;  1PTX A;  1JZB A;  1C56 A;  2KBJ A;  1T7E A;  1OMY A;  1P0A A;  1AHO A;  4CQK A;  1ZVG A;  2E3G A;  1SNB A;  1N4N A;  1PE4 A;  2KYQ A;  1I6G A;  2KJA A;  2M8B B;  3E7R L;  2KPY A;  1LQH A;  1WWN A;  2N2Q A;  2E3F A;  2GL1 A;  2YBR C;  5CY0 A;  1AYJ A;  1SEG A;  1SN1 A;  1BCG A;  2B3C A;  1SN4 A;  1B3C A;  1CN2 A;  4AAZ A;  2LJM A;  1BRZ A;  1I6F A;  2A7T A;  2LJ7 A;  1GPT A;  2KBH A;  1DJT A;  1FH3 A;  1NRB A;  2LT8 A;  2N69 A;  4HE7 A;  2N2R A;  1B7D A;  5KK4 A;  2B68 A;  2KGQ A;  2BRZ A;  3PSM A;  4HHF A; 
#chains in the Genus database with same CATH topology
 1BK8 A;  3FZH A;  2YEO A;  2NY9 X;  1WMT A;  2NY8 X;  1VNB A;  1DQ7 A;  3D2F A;  3KOX A;  2KSK A;  3FZM A;  3KOW A;  1ZYW A;  1WT7 A;  1TI5 A;  2LY5 A;  1JKZ A;  1ATS A;  5AQU A;  1S3X A;  1KAY A;  2LY6 A;  3ATV A;  5F1X A;  2ASC A;  1T1T A;  1NGE A;  3D2F B;  1L4V A;  5EX5 A;  5FPM A;  2ATB A;  2QWL A;  1MR4 A;  2YC1 C;  3QFU A;  5AQX A;  1ICA A;  1VNA A;  1LQQ A;  1C55 A;  2YIO A;  1BUP A;  1HJO A;  1ZU3 A;  1QQN A;  1JXC A;  1ZUT A;  3LDQ A;  4FL9 A;  1I2U A;  4V1D C;  1NRA A;  2I61 A;  3KC6 A;  3L56 A;  4AEI A;  1NH5 A;  1BA0 A;  1I2V A;  2QXL A;  2E0H A;  1KV0 A;  2E8A A;  2QWO A;  3E7U X;  1PX9 A;  2MZ0 A;  2D56 A;  2SN3 A;  1ZVE A;  2KBK A;  1ZFU A;  3GDQ A;  5AQI A;  1NGD A;  3AY9 A;  1YUW A;  5AQH A;  1QQO A;  1NGA A;  2QWM A;  1P00 A;  4KYP A;  2LI7 A;  1ZYV A;  3KOZ A;  4FSV A;  4AB0 A;  5AQZ A;  1T7A A;  1BMR A;  5FPD A;  1ATR A;  3I33 A;  1T0Z A;  2QWQ A;  2YIP A;  4UAE F;  2KHO A;  1MYN A;  2N66 A;  5AQT A;  2LKB A;  1K8B A;  4UJ0 A;  2MBK A;  3BK3 C;  5AQY A;  2LR3 A;  1NPI A;  1JZA A;  1BA1 A;  5FPE A;  1NE5 A;  3LDL A;  5BPL A;  3ATU A;  1T7B A;  1LQI A;  2MN5 A;  2YIL A;  5AQL A;  1NGI A;  1GPS A;  1UGL A;  1OZZ A;  3SF4 D;  1CHZ A;  5AQN A;  3KP0 A;  5AQV A;  1NGG A;  1PTX A;  3QI7 A;  3GKU A;  4IO8 A;  1HPM A;  2G2K A;  5EXW A;  5AQR A;  1JZB A;  1C56 A;  2KBJ A;  1T7E A;  1KAZ A;  2QW9 A;  1OMY A;  1P0A A;  1AHO A;  3A8Y A;  1ZVG A;  5EVZ A;  4CQK A;  5AQG A;  3D2E A;  4UAD E;  1HX1 A;  2E3G A;  1SNB A;  5AQM A;  3GL1 A;  2QWP A;  5AQJ A;  2E2F A;  2JDQ D;  5BN8 A;  3R2V A;  5BPM A;  5BPN A;  4H5N A;  5AR0 A;  1N4N A;  3L6Q A;  5AQS A;  1PE4 A;  2E88 A;  3D2E B;  2KYQ A;  4H5R A;  1NGF A;  5BN9 A;  3KHW A;  3HSC A;  1I6G A;  2KJA A;  4GNI A;  5AQO A;  2M8B B;  3E7R L;  2KPY A;  1LQH A;  5AQW A;  1NGH A;  1WWN A;  2N2Q A;  1QQM A;  2E3F A;  2GL1 A;  2QWR A;  2YBR C;  1XRS B;  1SEG A;  3FE1 A;  3LDO A;  2V7Z A;  5CY0 A;  1AYJ A;  1SN1 A;  1BCG A;  5AQK A;  3FZF A;  3JXU A;  2B3C A;  1SN4 A;  3QML A;  4H5W A;  4H5T A;  1B3C A;  1CN2 A;  3FZL A;  1NGB A;  3LDN A;  4AAZ A;  2LN8 A;  2VY6 A;  5AQF A;  5FPN A;  5AQQ A;  2LJM A;  1BRZ A;  4HWI A;  1I6F A;  2QWN A;  2A7T A;  3KVG A;  5AQP A;  1NGJ A;  2LJ7 A;  3QFP A;  1GPT A;  3C7N A;  2KBH A;  1DJT A;  2BUP A;  3FZK A;  1NRB A;  4UAF E;  3M3Z A;  5F0X A;  1FH3 A;  3CQX A;  2LT8 A;  4KBO A;  2N69 A;  2K35 A;  3L4I A;  2GMO A;  4H5V A;  4HE7 A;  2N2R A;  3KOY A;  3CW4 A;  1B7D A;  1NGC A;  5F2R A;  1POI A;  3C7N B;  5KK4 A;  1KAX A;  1DKG D;  2B68 A;  2KGQ A;  3KP1 A;  2BRZ A;  5EY4 A;  3LDP A;  3IUC A;  3PSM A;  4HHF A; 
#chains in the Genus database with same CATH homology
 1BK8 A;  2YEO A;  2NY9 X;  1WMT A;  2NY8 X;  1VNB A;  1DQ7 A;  2KSK A;  1ZYW A;  1WT7 A;  1TI5 A;  2LY5 A;  1JKZ A;  2LY6 A;  2ASC A;  1T1T A;  1L4V A;  2ATB A;  2YC1 C;  1MR4 A;  1ICA A;  1VNA A;  1LQQ A;  1C55 A;  1I2U A;  1ZU3 A;  1JXC A;  1ZUT A;  4V1D C;  1NRA A;  2I61 A;  4AEI A;  1NH5 A;  1I2V A;  2E0H A;  1KV0 A;  3E7U X;  1PX9 A;  2MZ0 A;  2SN3 A;  1ZVE A;  2KBK A;  1ZFU A;  1P00 A;  4KYP A;  2LI7 A;  1ZYV A;  4AB0 A;  1T7A A;  1BMR A;  1T0Z A;  1MYN A;  2N66 A;  2LKB A;  4UJ0 A;  2LR3 A;  1NPI A;  1JZA A;  1NE5 A;  1T7B A;  1LQI A;  1GPS A;  1OZZ A;  1CHZ A;  1PTX A;  1JZB A;  1C56 A;  2KBJ A;  1T7E A;  1OMY A;  1P0A A;  1AHO A;  4CQK A;  1ZVG A;  2E3G A;  1SNB A;  1N4N A;  1PE4 A;  2KYQ A;  1I6G A;  2KJA A;  2M8B B;  3E7R L;  2KPY A;  1LQH A;  1WWN A;  2N2Q A;  2E3F A;  2GL1 A;  2YBR C;  5CY0 A;  1AYJ A;  1SEG A;  1SN1 A;  1BCG A;  2B3C A;  1SN4 A;  1B3C A;  1CN2 A;  4AAZ A;  2LJM A;  1BRZ A;  1I6F A;  2A7T A;  2LJ7 A;  1GPT A;  2KBH A;  1DJT A;  1FH3 A;  1NRB A;  2LT8 A;  2N69 A;  4HE7 A;  2N2R A;  1B7D A;  5KK4 A;  2B68 A;  2KGQ A;  2BRZ A;  3PSM A;  4HHF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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