2SN3A

Structure of scorpion toxin variant-3 at 1.2 angstroms resolution
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
65
structure length
65
Chain Sequence
KEGYLVKKSDGCKYGCLKLGENEGCDTECKAKNQGGSYGYCYAFACWCEGLPESTPTYPLPNKSC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
source organism Centruroides exilicauda
publication title Structure of scorpion toxin variant-3 at 1.2 A resolution.
pubmed doi rcsb
molecule keywords SCORPION NEUROTOXIN (VARIANT 3)
total genus 17
structure length 65
sequence length 65
ec nomenclature
pdb deposition date 1992-02-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00537 Toxin_3 Scorpion toxin-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.10 Alpha Beta 2-Layer Sandwich Defensin A-like Knottin, scorpion toxin-like 2sn3A00
1PE4A 2LR3A 1L4VA 1NRAA 4HHFA 1NE5A 2KBKA 1P00A 1WT7A 1I2UA 1LQHA 2KSKA 2ATBA 1N4NA 1SN1A 2E0HA 1MR4A 1ZVEA 1BMRA 1SEGA 5KK4A 5CY0A 1FH3A 2LI7A 2LKBA 2BRZA 2YBRC 1ZU3A 3E7RL 1PX9A 2N66A 3PSMA 1NH5A 1GPTA 2E3FA 2LJMA 2NY9X 1T1TA 1LQQA 1ICAA 1B7DA 1C56A 4KYPA 2KJAA 1I6GA 4AEIA 1WWNA 1DJTA 1OZZA 2LY6A 4AB0A 4AAZA 1BRZA 1ZYVA 1LQIA 2KBHA 2SN3A 1ZVGA 1NPIA 1ZUTA 2ASCA 4HE7A 2A7TA 2KGQA 1MYNA 1I6FA 4V1DC 4UJ0A 2B68A 1NRBA 1P0AA 3E7UX 2NY8X 1DQ7A 1KV0A 1TI5A 2KBJA 2N69A 2LT8A 1T7BA 1CHZA 2N2QA 4CQKA 2YEOA 1SNBA 2KYQA 2M8BB 2I61A 1JKZA 1WMTA 2YC1C 1GPSA 2MZ0A 1ZYWA 2E3GA 1T0ZA 1JZAA 1T7AA 2B3CA 1AHOA 1JXCA 1AYJA 1ZFUA 1BCGA 1PTXA 2N2RA 2LJ7A 1VNBA 1JZBA 1T7EA 2KPYA 2LY5A 1I2VA 1BK8A 1CN2A 1B3CA 1OMYA 1SN4A 1C55A 2GL1A 1VNAA
chains in the Genus database with same CATH superfamily
3D2EB 1PE4A 3KOZA 2YILA 2E2FA 3C7NB 5AQKA 2LR3A 2QWPA 2V7ZA 1L4VA 4H5TA 3IUCA 5AQUA 1NRAA 4HHFA 1NE5A 5EX5A 5EY4A 2KBKA 3L6QA 3GL1A 1KAYA 1P00A 1WT7A 1I2UA 2MBKA 2G2KA 1LQHA 2YIPA 3BK3C 4UAEF 5BPNA 2KSKA 2ATBA 1N4NA 1SN1A 2E0HA 3KP1A 1MR4A 3L56A 3R2VA 2MN5A 5AQPA 3KC6A 3SF4D 1ZVEA 3FZLA 1NGGA 1SEGA 5AQNA 1BMRA 3FZKA 5KK4A 3CW4A 1NGBA 5CY0A 5AQGA 2GMOA 2LI7A 3KP0A 1FH3A 3GDQA 5BN9A 2LKBA 2BRZA 3QMLA 5F2RA 3FZMA 2YBRC 4FSVA 1ZU3A 4H5WA 2KHOA 1NGAA 3E7RL 4H5NA 3LDQA 1PX9A 4HWIA 2N66A 5AQMA 3PSMA 3JXUA 5AQSA 1NH5A 4FL9A 1GPTA 1NGFA 2E3FA 2LJMA 2NY9X 4KBOA 1T1TA 1LQQA 5AQJA 1ICAA 1B7DA 2YIOA 1C56A 4KYPA 2KJAA 3D2EA 5AQVA 3C7NA 1POIA 2QW9A 5AQZA 5FPDA 2LN8A 1I6GA 4AEIA 1WWNA 1DJTA 1OZZA 2LY6A 2QWOA 2QXLA 4AB0A 1ATRA 4AAZA 1BRZA 1HJOA 1YUWA 1ZYVA 3ATUA 1LQIA 3KVGA 3FZFA 3LDOA 3LDLA 3FE1A 2KBHA 2SN3A 1ZVGA 1NPIA 1BUPA 1ZUTA 1NGHA 2ASCA 4HE7A 1KAZA 3KOXA 2A7TA 1MYNA 2KGQA 1I6FA 3KHWA 5BN8A 3AY9A 4H5VA 4UAFE 5FPMA 4UADE 5EXWA 4V1DC 1XRSB 4UJ0A 2B68A 5AQFA 5BPLA 1NRBA 1BA0A 4IO8A 2K35A 1P0AA 3E7UX 1QQMA 5BPMA 1UGLA 2NY8X 3M3ZA 1DQ7A 5FPEA 1K8BA 3D2FB 1ATSA 3I33A 1KV0A 1TI5A 5FPNA 2KBJA 2N69A 2D56A 2JDQD 3HSCA 3KOYA 5AQLA 2VY6A 2LT8A 3QFPA 1T7BA 5AR0A 1CHZA 2N2QA 4CQKA 2QWQA 2QWRA 2YEOA 4GNIA 1SNBA 2KYQA 1NGEA 1BA1A 2M8BB 2I61A 5F1XA 1JKZA 1WMTA 1NGJA 2YC1C 1GPSA 2MZ0A 5AQYA 1ZYWA 1DKGD 1QQNA 2E3GA 3ATVA 1T0ZA 2QWLA 5AQRA 5AQOA 1KAXA 2QWNA 3GKUA 3LDPA 3LDNA 5AQXA 1JZAA 1NGCA 1T7AA 2B3CA 2BUPA 3FZHA 1AHOA 1NGIA 1JXCA 1HPMA 1S3XA 2QWMA 1AYJA 1ZFUA 3QI7A 5AQIA 5AQQA 1BCGA 1PTXA 2N2RA 2LJ7A 1VNBA 5AQHA 1HX1A 5AQWA 3D2FA 3L4IA 1JZBA 1T7EA 2KPYA 2E8AA 3KOWA 5EVZA 1NGDA 3A8YA 5AQTA 2LY5A 2E88A 1BK8A 1I2VA 4H5RA 1CN2A 1QQOA 1B3CA 3QFUA 5F0XA 1OMYA 1SN4A 1C55A 3CQXA 2GL1A 1VNAA
chains in the Genus database with same CATH topology
1PE4A 2LR3A 1L4VA 1NRAA 4HHFA 1NE5A 2KBKA 1P00A 1WT7A 1I2UA 1LQHA 2KSKA 2ATBA 1N4NA 1SN1A 2E0HA 1MR4A 1ZVEA 1BMRA 1SEGA 5KK4A 5CY0A 1FH3A 2LI7A 2LKBA 2BRZA 2YBRC 1ZU3A 3E7RL 1PX9A 2N66A 3PSMA 1NH5A 1GPTA 2E3FA 2LJMA 2NY9X 1T1TA 1LQQA 1ICAA 1B7DA 1C56A 4KYPA 2KJAA 1I6GA 4AEIA 1WWNA 1DJTA 1OZZA 2LY6A 4AB0A 4AAZA 1BRZA 1ZYVA 1LQIA 2KBHA 2SN3A 1ZVGA 1NPIA 1ZUTA 2ASCA 4HE7A 2A7TA 2KGQA 1MYNA 1I6FA 4V1DC 4UJ0A 2B68A 1NRBA 1P0AA 3E7UX 2NY8X 1DQ7A 1KV0A 1TI5A 2KBJA 2N69A 2LT8A 1T7BA 1CHZA 2N2QA 4CQKA 2YEOA 1SNBA 2KYQA 2M8BB 2I61A 1JKZA 1WMTA 2YC1C 1GPSA 2MZ0A 1ZYWA 2E3GA 1T0ZA 1JZAA 1T7AA 2B3CA 1AHOA 1JXCA 1AYJA 1ZFUA 1BCGA 1PTXA 2N2RA 2LJ7A 1VNBA 1JZBA 1T7EA 2KPYA 2LY5A 1I2VA 1BK8A 1CN2A 1B3CA 1OMYA 1SN4A 1C55A 2GL1A 1VNAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PE4 A;  2LR3 A;  1L4V A;  1NRA A;  4HHF A;  1NE5 A;  2KBK A;  1P00 A;  1WT7 A;  1I2U A;  1LQH A;  2KSK A;  2ATB A;  1N4N A;  1SN1 A;  2E0H A;  1MR4 A;  1ZVE A;  1BMR A;  1SEG A;  5KK4 A;  5CY0 A;  1FH3 A;  2LI7 A;  2LKB A;  2BRZ A;  2YBR C;  1ZU3 A;  3E7R L;  1PX9 A;  2N66 A;  3PSM A;  1NH5 A;  1GPT A;  2E3F A;  2LJM A;  2NY9 X;  1T1T A;  1LQQ A;  1ICA A;  1B7D A;  1C56 A;  4KYP A;  2KJA A;  1I6G A;  4AEI A;  1WWN A;  1DJT A;  1OZZ A;  2LY6 A;  4AB0 A;  4AAZ A;  1BRZ A;  1ZYV A;  1LQI A;  2KBH A;  2SN3 A;  1ZVG A;  1NPI A;  1ZUT A;  2ASC A;  4HE7 A;  2A7T A;  2KGQ A;  1MYN A;  1I6F A;  4V1D C;  4UJ0 A;  2B68 A;  1NRB A;  1P0A A;  3E7U X;  2NY8 X;  1DQ7 A;  1KV0 A;  1TI5 A;  2KBJ A;  2N69 A;  2LT8 A;  1T7B A;  1CHZ A;  2N2Q A;  4CQK A;  2YEO A;  1SNB A;  2KYQ A;  2M8B B;  2I61 A;  1JKZ A;  1WMT A;  2YC1 C;  1GPS A;  2MZ0 A;  1ZYW A;  2E3G A;  1T0Z A;  1JZA A;  1T7A A;  2B3C A;  1AHO A;  1JXC A;  1AYJ A;  1ZFU A;  1BCG A;  1PTX A;  2N2R A;  2LJ7 A;  1VNB A;  1JZB A;  1T7E A;  2KPY A;  2LY5 A;  1I2V A;  1BK8 A;  1CN2 A;  1B3C A;  1OMY A;  1SN4 A;  1C55 A;  2GL1 A;  1VNA A; 
#chains in the Genus database with same CATH topology
 3D2E B;  1PE4 A;  3KOZ A;  2YIL A;  2E2F A;  3C7N B;  5AQK A;  2LR3 A;  2QWP A;  2V7Z A;  1L4V A;  4H5T A;  3IUC A;  5AQU A;  1NRA A;  4HHF A;  1NE5 A;  5EX5 A;  5EY4 A;  2KBK A;  3L6Q A;  3GL1 A;  1KAY A;  1P00 A;  1WT7 A;  1I2U A;  2MBK A;  2G2K A;  1LQH A;  2YIP A;  3BK3 C;  4UAE F;  5BPN A;  2KSK A;  2ATB A;  1N4N A;  1SN1 A;  2E0H A;  3KP1 A;  1MR4 A;  3L56 A;  3R2V A;  2MN5 A;  5AQP A;  3KC6 A;  3SF4 D;  1ZVE A;  3FZL A;  1NGG A;  1SEG A;  5AQN A;  1BMR A;  3FZK A;  5KK4 A;  3CW4 A;  1NGB A;  5CY0 A;  5AQG A;  2GMO A;  2LI7 A;  3KP0 A;  1FH3 A;  3GDQ A;  5BN9 A;  2LKB A;  2BRZ A;  3QML A;  5F2R A;  3FZM A;  2YBR C;  4FSV A;  1ZU3 A;  4H5W A;  2KHO A;  1NGA A;  3E7R L;  4H5N A;  3LDQ A;  1PX9 A;  4HWI A;  2N66 A;  5AQM A;  3PSM A;  3JXU A;  5AQS A;  1NH5 A;  4FL9 A;  1GPT A;  1NGF A;  2E3F A;  2LJM A;  2NY9 X;  4KBO A;  1T1T A;  1LQQ A;  5AQJ A;  1ICA A;  1B7D A;  2YIO A;  1C56 A;  4KYP A;  2KJA A;  3D2E A;  5AQV A;  3C7N A;  1POI A;  2QW9 A;  5AQZ A;  5FPD A;  2LN8 A;  1I6G A;  4AEI A;  1WWN A;  1DJT A;  1OZZ A;  2LY6 A;  2QWO A;  2QXL A;  4AB0 A;  1ATR A;  4AAZ A;  1BRZ A;  1HJO A;  1YUW A;  1ZYV A;  3ATU A;  1LQI A;  3KVG A;  3FZF A;  3LDO A;  3LDL A;  3FE1 A;  2KBH A;  2SN3 A;  1ZVG A;  1NPI A;  1BUP A;  1ZUT A;  1NGH A;  2ASC A;  4HE7 A;  1KAZ A;  3KOX A;  2A7T A;  1MYN A;  2KGQ A;  1I6F A;  3KHW A;  5BN8 A;  3AY9 A;  4H5V A;  4UAF E;  5FPM A;  4UAD E;  5EXW A;  4V1D C;  1XRS B;  4UJ0 A;  2B68 A;  5AQF A;  5BPL A;  1NRB A;  1BA0 A;  4IO8 A;  2K35 A;  1P0A A;  3E7U X;  1QQM A;  5BPM A;  1UGL A;  2NY8 X;  3M3Z A;  1DQ7 A;  5FPE A;  1K8B A;  3D2F B;  1ATS A;  3I33 A;  1KV0 A;  1TI5 A;  5FPN A;  2KBJ A;  2N69 A;  2D56 A;  2JDQ D;  3HSC A;  3KOY A;  5AQL A;  2VY6 A;  2LT8 A;  3QFP A;  1T7B A;  5AR0 A;  1CHZ A;  2N2Q A;  4CQK A;  2QWQ A;  2QWR A;  2YEO A;  4GNI A;  1SNB A;  2KYQ A;  1NGE A;  1BA1 A;  2M8B B;  2I61 A;  5F1X A;  1JKZ A;  1WMT A;  1NGJ A;  2YC1 C;  1GPS A;  2MZ0 A;  5AQY A;  1ZYW A;  1DKG D;  1QQN A;  2E3G A;  3ATV A;  1T0Z A;  2QWL A;  5AQR A;  5AQO A;  1KAX A;  2QWN A;  3GKU A;  3LDP A;  3LDN A;  5AQX A;  1JZA A;  1NGC A;  1T7A A;  2B3C A;  2BUP A;  3FZH A;  1AHO A;  1NGI A;  1JXC A;  1HPM A;  1S3X A;  2QWM A;  1AYJ A;  1ZFU A;  3QI7 A;  5AQI A;  5AQQ A;  1BCG A;  1PTX A;  2N2R A;  2LJ7 A;  1VNB A;  5AQH A;  1HX1 A;  5AQW A;  3D2F A;  3L4I A;  1JZB A;  1T7E A;  2KPY A;  2E8A A;  3KOW A;  5EVZ A;  1NGD A;  3A8Y A;  5AQT A;  2LY5 A;  2E88 A;  1BK8 A;  1I2V A;  4H5R A;  1CN2 A;  1QQO A;  1B3C A;  3QFU A;  5F0X A;  1OMY A;  1SN4 A;  1C55 A;  3CQX A;  2GL1 A;  1VNA A; 
#chains in the Genus database with same CATH homology
 1PE4 A;  2LR3 A;  1L4V A;  1NRA A;  4HHF A;  1NE5 A;  2KBK A;  1P00 A;  1WT7 A;  1I2U A;  1LQH A;  2KSK A;  2ATB A;  1N4N A;  1SN1 A;  2E0H A;  1MR4 A;  1ZVE A;  1BMR A;  1SEG A;  5KK4 A;  5CY0 A;  1FH3 A;  2LI7 A;  2LKB A;  2BRZ A;  2YBR C;  1ZU3 A;  3E7R L;  1PX9 A;  2N66 A;  3PSM A;  1NH5 A;  1GPT A;  2E3F A;  2LJM A;  2NY9 X;  1T1T A;  1LQQ A;  1ICA A;  1B7D A;  1C56 A;  4KYP A;  2KJA A;  1I6G A;  4AEI A;  1WWN A;  1DJT A;  1OZZ A;  2LY6 A;  4AB0 A;  4AAZ A;  1BRZ A;  1ZYV A;  1LQI A;  2KBH A;  2SN3 A;  1ZVG A;  1NPI A;  1ZUT A;  2ASC A;  4HE7 A;  2A7T A;  2KGQ A;  1MYN A;  1I6F A;  4V1D C;  4UJ0 A;  2B68 A;  1NRB A;  1P0A A;  3E7U X;  2NY8 X;  1DQ7 A;  1KV0 A;  1TI5 A;  2KBJ A;  2N69 A;  2LT8 A;  1T7B A;  1CHZ A;  2N2Q A;  4CQK A;  2YEO A;  1SNB A;  2KYQ A;  2M8B B;  2I61 A;  1JKZ A;  1WMT A;  2YC1 C;  1GPS A;  2MZ0 A;  1ZYW A;  2E3G A;  1T0Z A;  1JZA A;  1T7A A;  2B3C A;  1AHO A;  1JXC A;  1AYJ A;  1ZFU A;  1BCG A;  1PTX A;  2N2R A;  2LJ7 A;  1VNB A;  1JZB A;  1T7E A;  2KPY A;  2LY5 A;  1I2V A;  1BK8 A;  1CN2 A;  1B3C A;  1OMY A;  1SN4 A;  1C55 A;  2GL1 A;  1VNA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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