3CW4A

Large c-terminal domain of influenza a virus rna-dependent polymerase pb2
Total Genus 55

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
208
structure length
208
Chain Sequence
MMWEINGPESVLVNTYQWIIRNWETVKIQWSQNPTMLYNKMEFEPFQSLVPKAIRGQYSGFVRTLFQQMRDVLGTFDTAQIIKLLPFAAAPPKQSRMQFSSFTVNVRGSGMRILVRGNSPVFNYNKATKRLTVLGKDAGTLTEDPDEGTAGVESAVLRGFLILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRDSS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (3-6)AH1 (8-32)AH5 (78-84)TI2 (144-147)EMPTYAH4 (54-71)AH2 (34-38)3H2 (41-43)AH3 (44-49)TIV2 (105-108)TIV1 (51-54)S1 (101-104)TII1 (72-75)TIV9 (157-160)TIV8 (153-156)S2 (111-114)3H3 (85-88)TVIII1 (114-117)TIV3 (106-109)TI1 (119-122)S3 (123-124)S4 (130-132)TIV5 (125-128)TVIII3 (126-129)S5 (137-140)S6 (160-165)3H4 (168-170)S7 (186-193)TII2 (183-186)S8 (196-202)3H5 (176-181)Updating...
connected with : NaN
molecule tags Transferase
source organism Influenza a virus
publication title Structural basis of the influenza A virus RNA polymerase PB2 RNA-binding domain containing the pathogenicity-determinant lysine 627 residue
pubmed doi rcsb
molecule keywords Polymerase basic protein 2
total genus 55
structure length 208
sequence length 208
ec nomenclature ec 2.7.-.-:
pdb deposition date 2008-04-21
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.30.90 Alpha Beta 2-Layer Sandwich Defensin A-like Defensin A-like 3cw4A02
2GMOA 3L56A 2VY6A 3KC6A 3KHWA 3CW4A 4UAFE 4UAEF 4UADE 3R2VA 2JDQD
chains in the Genus database with same CATH superfamily
4AAZA 5AQMA 2BUPA 1HX1A 2KPYA 1ZVEA 1NGFA 1FH3A 1KAXA 1NGIA 1T1TA 1T7AA 1XRSB 1JZBA 2QWPA 3KOYA 2LN8A 2YC1C 3FZKA 2QWNA 2I61A 2KBHA 1MYNA 2N69A 1PX9A 5AQLA 2LJ7A 2E3GA 1VNBA 5EVZA 3I33A 3QFPA 1I2UA 3D2FB 5AQGA 1GPTA 1BUPA 5KK4A 1BCGA 2E8AA 2QWOA 3LDQA 3L6QA 4V1DC 5AQXA 3GL1A 2YBRC 4UJ0A 4H5VA 1ICAA 1T7BA 1ATSA 4HHFA 2NY8X 3E7RL 1ZU3A 1BA0A 3KOWA 1HPMA 5AR0A 1MR4A 3QI7A 1S3XA 3E7UX 1NGEA 5AQPA 3KOZA 4HWIA 5EX5A 1C56A 1SN4A 4IO8A 5AQIA 3QFUA 1SEGA 3LDPA 3C7NB 5AQOA 5AQFA 5AQRA 2KBJA 2E2FA 1SN1A 1ZYVA 2D56A 2N66A 4AEIA 1BRZA 1P0AA 1N4NA 2KYQA 3KP1A 2LY5A 2QWMA 1KV0A 3FZFA 3KOXA 2G2KA 5BPMA 1I2VA 1CHZA 1ZVGA 3FE1A 2V7ZA 2E88A 3BK3C 3ATUA 2KJAA 2M8BB 2ASCA 2LY6A 5FPNA 1HJOA 1DQ7A 5BN8A 2A7TA 2N2QA 3ATVA 1I6GA 4H5TA 4KBOA 1NRBA 1NGBA 3KP0A 1C55A 2YIPA 4FSVA 2QXLA 1NGHA 1DJTA 1NRAA 1B7DA 2LT8A 5FPEA 1B3CA 1DKGD 2KBKA 2LKBA 2GL1A 1KAZA 1NGJA 1AHOA 4AB0A 3LDNA 1BMRA 1NH5A 5AQYA 1LQHA 1CN2A 4GNIA 5CY0A 3FZMA 1I6FA 3A8YA 1PE4A 1SNBA 2B3CA 2B68A 2YIOA 3KHWA 2QWLA 3CW4A 1BA1A 2K35A 2LR3A 1JXCA 1ZFUA 3KVGA 3JXUA 5AQVA 1QQOA 3HSCA 5AQZA 3SF4D 5BPNA 4H5RA 2N2RA 3LDOA 2LJMA 1L4VA 1JZAA 2KSKA 5AQNA 1VNAA 5F1XA 5AQKA 4UADE 1NGDA 2E3FA 2GMOA 2YILA 4CQKA 1QQMA 3L56A 1NPIA 5AQWA 1P00A 1JKZA 2MN5A 5BPLA 1T0ZA 5F0XA 1UGLA 3D2FA 1T7EA 2SN3A 1BK8A 1GPSA 1OMYA 5AQQA 1PTXA 1OZZA 3GDQA 1TI5A 5AQUA 1WMTA 3PSMA 3FZLA 2ATBA 2QWRA 1NGGA 3QMLA 5EXWA 1KAYA 5F2RA 2QW9A 4H5NA 1YUWA 4FL9A 3D2EA 3M3ZA 2E0HA 2MBKA 2MZ0A 2NY9X 4H5WA 5AQTA 2JDQD 2YEOA 1ZYWA 1QQNA 3AY9A 5AQSA 3IUCA 5FPMA 2VY6A 5AQHA 3LDLA 2BRZA 2KGQA 1ZUTA 3CQXA 3D2EB 3L4IA 1NGCA 4UAFE 5EY4A 1LQIA 1NGAA 1ATRA 3R2VA 3C7NA 1WT7A 4HE7A 1AYJA 4KYPA 3KC6A 1NE5A 1LQQA 2LI7A 2KHOA 2QWQA 1K8BA 1WWNA 5AQJA 5FPDA 4UAEF 3FZHA 1POIA 3GKUA 5BN9A
chains in the Genus database with same CATH topology
5AQMA 2BUPA 1HX1A 1NGFA 1KAXA 1NGIA 2QWPA 2LN8A 3FZKA 2QWNA 5EVZA 5EY4A 5AQLA 3I33A 3QFPA 3D2FB 5AQGA 1BUPA 3LDQA 2E8AA 2QWOA 3L6QA 5AQXA 3GL1A 4H5VA 1ATSA 1BA0A 1HPMA 5AR0A 3QI7A 1S3XA 1NGEA 5AQPA 4HWIA 5EX5A 4IO8A 5AQIA 3QFUA 3LDPA 3C7NB 5AQOA 5AQFA 5AQRA 2E2FA 2D56A 2QWMA 3FZFA 5BPMA 3FE1A 2V7ZA 2E88A 3BK3C 3ATUA 5FPNA 1HJOA 5BN8A 3ATVA 4H5TA 4KBOA 1NGBA 2YIPA 4FSVA 2QXLA 1NGHA 5FPEA 1DKGD 1KAZA 1NGJA 3LDNA 5AQYA 4GNIA 3FZMA 3A8YA 2YIOA 3KHWA 2QWLA 3CW4A 1BA1A 2K35A 3KVGA 3SF4D 3JXUA 5AQVA 1QQOA 3HSCA 5AQZA 5BPNA 4H5RA 3LDOA 5AQNA 5F1XA 5AQKA 4UADE 1NGDA 2GMOA 2YILA 1QQMA 3L56A 5AQWA 2MN5A 5BPLA 5F0XA 3D2FA 5AQQA 3GDQA 5AQUA 3FZLA 2QWRA 1NGGA 3QMLA 5EXWA 1KAYA 5F2RA 2QW9A 4H5NA 1YUWA 4FL9A 3D2EA 3M3ZA 2MBKA 4H5WA 5AQTA 2JDQD 5AQSA 1QQNA 3AY9A 3IUCA 5FPMA 2VY6A 5AQHA 3LDLA 3CQXA 3D2EB 3L4IA 1NGCA 4UAFE 1NGAA 1ATRA 3R2VA 3C7NA 3KC6A 2KHOA 2QWQA 5AQJA 5FPDA 4UAEF 3FZHA 1POIA 5BN9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GMO A;  3L56 A;  2VY6 A;  3KC6 A;  3KHW A;  3CW4 A;  4UAF E;  4UAE F;  4UAD E;  3R2V A;  2JDQ D; 
#chains in the Genus database with same CATH topology
 4AAZ A;  5AQM A;  2BUP A;  1HX1 A;  2KPY A;  1ZVE A;  1NGF A;  1FH3 A;  1KAX A;  1NGI A;  1T1T A;  1T7A A;  1XRS B;  1JZB A;  2QWP A;  3KOY A;  2LN8 A;  2YC1 C;  3FZK A;  2QWN A;  2I61 A;  2KBH A;  1MYN A;  2N69 A;  1PX9 A;  5AQL A;  2LJ7 A;  2E3G A;  1VNB A;  5EVZ A;  3I33 A;  3QFP A;  1I2U A;  3D2F B;  5AQG A;  1GPT A;  1BUP A;  5KK4 A;  1BCG A;  2E8A A;  2QWO A;  3LDQ A;  3L6Q A;  4V1D C;  5AQX A;  3GL1 A;  2YBR C;  4UJ0 A;  4H5V A;  1ICA A;  1T7B A;  1ATS A;  4HHF A;  2NY8 X;  3E7R L;  1ZU3 A;  1BA0 A;  3KOW A;  1HPM A;  5AR0 A;  1MR4 A;  3QI7 A;  1S3X A;  3E7U X;  1NGE A;  5AQP A;  3KOZ A;  4HWI A;  5EX5 A;  1C56 A;  1SN4 A;  4IO8 A;  5AQI A;  3QFU A;  1SEG A;  3LDP A;  3C7N B;  5AQO A;  5AQF A;  5AQR A;  2KBJ A;  2E2F A;  1SN1 A;  1ZYV A;  2D56 A;  2N66 A;  4AEI A;  1BRZ A;  1P0A A;  1N4N A;  2KYQ A;  3KP1 A;  2LY5 A;  2QWM A;  1KV0 A;  3FZF A;  3KOX A;  2G2K A;  5BPM A;  1I2V A;  1CHZ A;  1ZVG A;  3FE1 A;  2V7Z A;  2E88 A;  3BK3 C;  3ATU A;  2KJA A;  2M8B B;  2ASC A;  2LY6 A;  5FPN A;  1HJO A;  1DQ7 A;  5BN8 A;  2A7T A;  2N2Q A;  3ATV A;  1I6G A;  4H5T A;  4KBO A;  1NRB A;  1NGB A;  3KP0 A;  1C55 A;  2YIP A;  4FSV A;  2QXL A;  1NGH A;  1DJT A;  1NRA A;  1B7D A;  2LT8 A;  5FPE A;  1B3C A;  1DKG D;  2KBK A;  2LKB A;  2GL1 A;  1KAZ A;  1NGJ A;  1AHO A;  4AB0 A;  3LDN A;  1BMR A;  1NH5 A;  5AQY A;  1LQH A;  1CN2 A;  4GNI A;  5CY0 A;  3FZM A;  1I6F A;  3A8Y A;  1PE4 A;  1SNB A;  2B3C A;  2B68 A;  2YIO A;  3KHW A;  2QWL A;  3CW4 A;  1BA1 A;  2K35 A;  2LR3 A;  1JXC A;  1ZFU A;  3KVG A;  3JXU A;  5AQV A;  1QQO A;  3HSC A;  5AQZ A;  3SF4 D;  5BPN A;  4H5R A;  2N2R A;  3LDO A;  2LJM A;  1L4V A;  1JZA A;  2KSK A;  5AQN A;  1VNA A;  5F1X A;  5AQK A;  4UAD E;  1NGD A;  2E3F A;  2GMO A;  2YIL A;  4CQK A;  1QQM A;  3L56 A;  1NPI A;  5AQW A;  1P00 A;  1JKZ A;  2MN5 A;  5BPL A;  1T0Z A;  5F0X A;  1UGL A;  3D2F A;  1T7E A;  2SN3 A;  1BK8 A;  1GPS A;  1OMY A;  5AQQ A;  1PTX A;  1OZZ A;  3GDQ A;  1TI5 A;  5AQU A;  1WMT A;  3PSM A;  3FZL A;  2ATB A;  2QWR A;  1NGG A;  3QML A;  5EXW A;  1KAY A;  5F2R A;  2QW9 A;  4H5N A;  1YUW A;  4FL9 A;  3D2E A;  3M3Z A;  2E0H A;  2MBK A;  2MZ0 A;  2NY9 X;  4H5W A;  5AQT A;  2JDQ D;  2YEO A;  1ZYW A;  1QQN A;  3AY9 A;  5AQS A;  3IUC A;  5FPM A;  2VY6 A;  5AQH A;  3LDL A;  2BRZ A;  2KGQ A;  1ZUT A;  3CQX A;  3D2E B;  3L4I A;  1NGC A;  4UAF E;  5EY4 A;  1LQI A;  1NGA A;  1ATR A;  3R2V A;  3C7N A;  1WT7 A;  4HE7 A;  1AYJ A;  4KYP A;  3KC6 A;  1NE5 A;  1LQQ A;  2LI7 A;  2KHO A;  2QWQ A;  1K8B A;  1WWN A;  5AQJ A;  5FPD A;  4UAE F;  3FZH A;  1POI A;  3GKU A;  5BN9 A; 
#chains in the Genus database with same CATH homology
 5AQM A;  2BUP A;  1HX1 A;  1NGF A;  1KAX A;  1NGI A;  2QWP A;  2LN8 A;  3FZK A;  2QWN A;  5EVZ A;  5EY4 A;  5AQL A;  3I33 A;  3QFP A;  3D2F B;  5AQG A;  1BUP A;  3LDQ A;  2E8A A;  2QWO A;  3L6Q A;  5AQX A;  3GL1 A;  4H5V A;  1ATS A;  1BA0 A;  1HPM A;  5AR0 A;  3QI7 A;  1S3X A;  1NGE A;  5AQP A;  4HWI A;  5EX5 A;  4IO8 A;  5AQI A;  3QFU A;  3LDP A;  3C7N B;  5AQO A;  5AQF A;  5AQR A;  2E2F A;  2D56 A;  2QWM A;  3FZF A;  5BPM A;  3FE1 A;  2V7Z A;  2E88 A;  3BK3 C;  3ATU A;  5FPN A;  1HJO A;  5BN8 A;  3ATV A;  4H5T A;  4KBO A;  1NGB A;  2YIP A;  4FSV A;  2QXL A;  1NGH A;  5FPE A;  1DKG D;  1KAZ A;  1NGJ A;  3LDN A;  5AQY A;  4GNI A;  3FZM A;  3A8Y A;  2YIO A;  3KHW A;  2QWL A;  3CW4 A;  1BA1 A;  2K35 A;  3KVG A;  3SF4 D;  3JXU A;  5AQV A;  1QQO A;  3HSC A;  5AQZ A;  5BPN A;  4H5R A;  3LDO A;  5AQN A;  5F1X A;  5AQK A;  4UAD E;  1NGD A;  2GMO A;  2YIL A;  1QQM A;  3L56 A;  5AQW A;  2MN5 A;  5BPL A;  5F0X A;  3D2F A;  5AQQ A;  3GDQ A;  5AQU A;  3FZL A;  2QWR A;  1NGG A;  3QML A;  5EXW A;  1KAY A;  5F2R A;  2QW9 A;  4H5N A;  1YUW A;  4FL9 A;  3D2E A;  3M3Z A;  2MBK A;  4H5W A;  5AQT A;  2JDQ D;  5AQS A;  1QQN A;  3AY9 A;  3IUC A;  5FPM A;  2VY6 A;  5AQH A;  3LDL A;  3CQX A;  3D2E B;  3L4I A;  1NGC A;  4UAF E;  1NGA A;  1ATR A;  3R2V A;  3C7N A;  3KC6 A;  2KHO A;  2QWQ A;  5AQJ A;  5FPD A;  4UAE F;  3FZH A;  1POI A;  5BN9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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